GMAP and GSNAP for genomic sequence alignment: Enhancements to speed, accuracy, and functionality

Methods in Molecular Biology

Volumn 1418, Issue , 2016, Pages 283-334

  Wu, Thomas D ^a   Reeder, Jens ^a   Lawrence, Michael ^a   Becker, Gabe ^a   Brauer, Matthew J ^a  

^a NONE

Author keywords

Bioinformatics algorithms; DNA seq; Genomic alignment; Genomic mapping; Next generation sequencing; RNA seq; Sequence analysis; Transcriptome analysis

Indexed keywords

BISULFITE; NUCLEOTIDE; OLIGOMER;

ACCURACY; ALTERNATIVE RNA SPLICING; BIOINFORMATICS; CHROMOSOME; CODON USAGE; COMPRESSION; COMPUTATIONAL FLUID DYNAMICS; COMPUTER PROGRAM; DATA ANALYSIS; DNA SEQUENCE; EXON; GENE MAPPING; GENE STRUCTURE; GENETIC ALGORITHM; GENETIC DATABASE; GENOME; GENOMICS; GMAP PROGRAM; GSNAP PROGRAM; HUMAN; INDEL MUTATION; INFORMATION PROCESSING; MITOCHONDRIAL GENOME; MOLECULAR DYNAMICS; NEXT GENERATION SEQUENCING; RNA EDITING; RNA SEQUENCE; SEQUENCE ALIGNMENT; SINGLE INSTRUCTION MULTIPLE DATA; SINGLE NUCLEOTIDE POLYMORPHISM; STANDARDIZATION; ALGORITHM; BIOLOGY; GENE EXPRESSION PROFILING; HIGH THROUGHPUT SEQUENCING; PROCEDURES; REPRODUCIBILITY; RNA SPLICING; SOFTWARE; STANDARDS; TIME FACTOR;

ALGORITHMS; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; GENE EXPRESSION PROFILING; GENOME; GENOMICS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; POLYMORPHISM, SINGLE NUCLEOTIDE; REPRODUCIBILITY OF RESULTS; RNA EDITING; RNA SPLICING; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SOFTWARE; TIME FACTORS;

EID: 84961618446     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-3578-9_15     Document Type: Chapter

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