Using video-oriented instructions to speed up sequence comparison

Bioinformatics

Volumn 13, Issue 2, 1997, Pages 145-150

  Wozniak, A ^a  

^a INRIA   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; COMPARATIVE STUDY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

EID: 0030935244     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/13.2.145     Document Type: Article

References (11)

1. Alpern, B., Carter.L. and Gatlin.K. (1995) Microparallelism and high-performance protein matching. In: Proc. Supercomputing.
2. Altschul.S., Gish, W., Miller.W., Myers, E. and Lipman, D. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
3. Glemet.E. and Codani.J. (1996) Lassap: a large scale sequence comparisons package. Comput. Appl. BioSci., 13, 137-144.
4. Gwennap.L. (1996) Intel's mmx speeds multimedia Microprocessor Rep., 10, 6-10.
5. Lavenier, D. (1996) Samba: Systolic accelerators for molecular biological applications. Technical Report TR 988, IRISA, France.
6. Lipman, D., Wilbur.W., Smith, T. and Waterman, M. (1984) On the statistical significance of nucleic acid similarities. Nucleic Acids Res., 12, 215-226.
7. Ltd., C. (1996) BIOCCELERATOR Manual. Petah-Tikva. Israel.
8. Sun Microelectronics. (1996a) VltraSPARC-1 User's Manual, Rev 1.4.
9. Sun Microelectronics. (1996b) Visual Instruction Set User's Guide.
10. Pearson.W. and Lipman.D. (1988) Improve tools for biological sequence comparison. Proc Nail Acad. Sci. USA, 85, 2444-2448.
11. Smith, T. and Waterman, M. (1981) Identification of common molecular subsequences./ Mol Biol., 147, 195-197.