Mining Large Scale Tandem Mass Spectrometry Data for Protein Modifications Using Spectral Libraries

Journal of Proteome Research

Volumn 15, Issue 3, 2016, Pages 721-731

  Horlacher, Oliver ^a,b   Lisacek, Frederique ^a,b   Müller, Markus ^a,b  

^a SWISS INSTITUTE OF BIOINFORMATICS   (Switzerland)

^b UNIVERSITY OF GENEVA   (Switzerland)

Author keywords

Apache Spark; big data; Hadoop; human tissues; MS MS; open modification search; parallel computing; proteomics; PTM

Indexed keywords

ALGORITHM; AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; COMPARATIVE STUDY; COMPUTER PROGRAM; DATA MINING; LYSINE SUCCINYLATION; OXIDATION; PEPTIDE LIBRARY; PRIORITY JOURNAL; PROTEIN ACETYLATION; PROTEIN METHYLATION; PROTEIN MODIFICATION; PROTEIN PHOSPHORYLATION; PROTEIN PROCESSING; QUANTITATIVE ANALYSIS; STOICHIOMETRY; TANDEM MASS SPECTROMETRY; HUMAN; PROCEDURES; PROTEIN DATABASE; PROTEOMICS; SEARCH ENGINE; SOFTWARE;

DATA MINING; DATABASES, PROTEIN; HUMANS; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEOMICS; SEARCH ENGINE; SOFTWARE; TANDEM MASS SPECTROMETRY;

EID: 84960390028     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/acs.jproteome.5b00877     Document Type: Article

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