Mapreduce implementation of a hybrid spectral library-database search method for large-scale peptide identification

Bioinformatics

Volumn 27, Issue 21, 2011, Pages 3072-3073

  Kalyanaraman, Ananth ^a   Cannon, William R ^b   Latt, Benjamin ^a   Baxter, Douglas J ^c  

^a Washington State University   (United States)

^b PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

^c PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDE;

ARTICLE; CHEMISTRY; COMPUTER PROGRAM; MASS SPECTROMETRY; METHODOLOGY; PROTEIN DATABASE; SEQUENCE ANALYSIS;

DATABASES, PROTEIN; MASS SPECTROMETRY; PEPTIDES; SEQUENCE ANALYSIS, PROTEIN; SOFTWARE;

EID: 80054897572     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr523     Document Type: Article

References (3)

1. Cannon,W.R. et al. (2011) Large improvements in MS/MS based peptide identification rates using a hybrid analysis. J Proteome Res., 10, 2306-2317.
2. Dean,J. and Ghemawat,S. (2008) MapReduce: simplified data processing on large clusters. Commun. ACM, 51, 107-113.
3. Halligan,B.D. et al. (2009) Low-cost, scalable proteomics data analysis using Amazon's cloud computing services and open source search algorithms. J. Proteome Res., 8, 3148-3153.