-
1
-
-
77954499965
-
Chemical genetics screen for enhancers of rapamycin identifies a specific inhibitor of an SCF family E3 ubiquitin ligase
-
M. Aghajan, N. Jonai, K. Flick, F. Fu, M. Luo, X. Cai, I. Ouni, N. Pierce, X. Tang, and B. Lomenick Chemical genetics screen for enhancers of rapamycin identifies a specific inhibitor of an SCF family E3 ubiquitin ligase Nat. Biotechnol. 28 2010 738 742
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 738-742
-
-
Aghajan, M.1
Jonai, N.2
Flick, K.3
Fu, F.4
Luo, M.5
Cai, X.6
Ouni, I.7
Pierce, N.8
Tang, X.9
Lomenick, B.10
-
2
-
-
30344462410
-
Systems analyses reveal two chaperone networks with distinct functions in eukaryotic cells
-
DOI 10.1016/j.cell.2005.11.039, PII S0092867405014091
-
V. Albanèse, A.Y. Yam, J. Baughman, C. Parnot, and J. Frydman Systems analyses reveal two chaperone networks with distinct functions in eukaryotic cells Cell 124 2006 75 88 (Pubitemid 43069311)
-
(2006)
Cell
, vol.124
, Issue.1
, pp. 75-88
-
-
Albanese, V.1
Yam, A.Y.-W.2
Baughman, J.3
Parnot, C.4
Frydman, J.5
-
3
-
-
33646176246
-
Crystal structure of an Hsp90-nucleotide-p23/Sba1 closed chaperone complex
-
M.M. Ali, S.M. Roe, C.K. Vaughan, P. Meyer, B. Panaretou, P.W. Piper, C. Prodromou, and L.H. Pearl Crystal structure of an Hsp90-nucleotide-p23/Sba1 closed chaperone complex Nature 440 2006 1013 1017
-
(2006)
Nature
, vol.440
, pp. 1013-1017
-
-
Ali, M.M.1
Roe, S.M.2
Vaughan, C.K.3
Meyer, P.4
Panaretou, B.5
Piper, P.W.6
Prodromou, C.7
Pearl, L.H.8
-
4
-
-
77955957347
-
Evolution of characterized phosphorylation sites in budding yeast
-
A.N. Ba, and A.M. Moses Evolution of characterized phosphorylation sites in budding yeast Mol. Biol. Evol. 27 2010 2027 2037
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 2027-2037
-
-
Ba, A.N.1
Moses, A.M.2
-
5
-
-
33749853607
-
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
-
DOI 10.1038/nbt1240, PII NBT1240
-
S.A. Beausoleil, J. Villén, S.A. Gerber, J. Rush, and S.P. Gygi A probability-based approach for high-throughput protein phosphorylation analysis and site localization Nat. Biotechnol. 24 2006 1285 1292 (Pubitemid 44564776)
-
(2006)
Nature Biotechnology
, vol.24
, Issue.10
, pp. 1285-1292
-
-
Beausoleil, S.A.1
Villen, J.2
Gerber, S.A.3
Rush, J.4
Gygi, S.P.5
-
6
-
-
33847249901
-
Specificity and evolvability in eukaryotic protein interaction networks
-
P. Beltrao, and L. Serrano Specificity and evolvability in eukaryotic protein interaction networks PLoS Comput. Biol. 3 2007 e25
-
(2007)
PLoS Comput. Biol.
, vol.3
, pp. 25
-
-
Beltrao, P.1
Serrano, L.2
-
7
-
-
67649972198
-
Evolution of phosphoregulation: Comparison of phosphorylation patterns across yeast species
-
P. Beltrao, J.C. Trinidad, D. Fiedler, A. Roguev, W.A. Lim, K.M. Shokat, A.L. Burlingame, and N.J. Krogan Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species PLoS Biol. 7 2009 e1000134
-
(2009)
PLoS Biol.
, vol.7
, pp. 1000134
-
-
Beltrao, P.1
Trinidad, J.C.2
Fiedler, D.3
Roguev, A.4
Lim, W.A.5
Shokat, K.M.6
Burlingame, A.L.7
Krogan, N.J.8
-
8
-
-
22744439568
-
Evolution at two levels: On genes and form
-
S.B. Carroll Evolution at two levels: on genes and form PLoS Biol. 3 2005 e245
-
(2005)
PLoS Biol.
, vol.3
, pp. 245
-
-
Carroll, S.B.1
-
9
-
-
77952956167
-
Decoding signalling networks by mass spectrometry-based proteomics
-
C. Choudhary, and M. Mann Decoding signalling networks by mass spectrometry-based proteomics Nat. Rev. Mol. Cell Biol. 11 2010 427 439
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 427-439
-
-
Choudhary, C.1
Mann, M.2
-
10
-
-
68949212379
-
Lysine acetylation targets protein complexes and co-regulates major cellular functions
-
C. Choudhary, C. Kumar, F. Gnad, M.L. Nielsen, M. Rehman, T.C. Walther, J.V. Olsen, and M. Mann Lysine acetylation targets protein complexes and co-regulates major cellular functions Science 325 2009 834 840
-
(2009)
Science
, vol.325
, pp. 834-840
-
-
Choudhary, C.1
Kumar, C.2
Gnad, F.3
Nielsen, M.L.4
Rehman, M.5
Walther, T.C.6
Olsen, J.V.7
Mann, M.8
-
11
-
-
3042839349
-
Phosphorylation of RhoGDI by Pak1 mediates dissociation of Rac GTPase
-
DOI 10.1016/j.molcel.2004.05.019, PII S1097276504003053
-
C. DerMardirossian, A. Schnelzer, and G.M. Bokoch Phosphorylation of RhoGDI by Pak1 mediates dissociation of Rac GTPase Mol. Cell 15 2004 117 127 (Pubitemid 38850224)
-
(2004)
Molecular Cell
, vol.15
, Issue.1
, pp. 117-127
-
-
Dermardirossian, C.1
Schnelzer, A.2
Bokoch, G.M.3
-
12
-
-
70350704659
-
A general life-death selection strategy for dissecting protein functions
-
P.H. Ear, and S.W. Michnick A general life-death selection strategy for dissecting protein functions Nat. Methods 6 2009 813 816
-
(2009)
Nat. Methods
, vol.6
, pp. 813-816
-
-
Ear, P.H.1
Michnick, S.W.2
-
13
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
DOI 10.1093/nar/gkh340
-
R.C. Edgar MUSCLE: multiple sequence alignment with high accuracy and high throughput Nucleic Acids Res. 32 2004 1792 1797 (Pubitemid 38832724)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
14
-
-
80054694510
-
Global identification of modular cullin-RING ligase substrates
-
M.J. Emanuele, A.E. Elia, Q. Xu, C.R. Thoma, L. Izhar, Y. Leng, A. Guo, Y.N. Chen, J. Rush, and P.W. Hsu Global identification of modular cullin-RING ligase substrates Cell 147 2011 459 474
-
(2011)
Cell
, vol.147
, pp. 459-474
-
-
Emanuele, M.J.1
Elia, A.E.2
Xu, Q.3
Thoma, C.R.4
Izhar, L.5
Leng, Y.6
Guo, A.7
Chen, Y.N.8
Rush, J.9
Hsu, P.W.10
-
15
-
-
78650981194
-
A methylation and phosphorylation switch between an adjacent lysine and serine determines human DNMT1 stability
-
P.O. Estève, Y. Chang, M. Samaranayake, A.K. Upadhyay, J.R. Horton, G.R. Feehery, X. Cheng, and S. Pradhan A methylation and phosphorylation switch between an adjacent lysine and serine determines human DNMT1 stability Nat. Struct. Mol. Biol. 18 2011 42 48
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 42-48
-
-
Estève, P.O.1
Chang, Y.2
Samaranayake, M.3
Upadhyay, A.K.4
Horton, J.R.5
Feehery, G.R.6
Cheng, X.7
Pradhan, S.8
-
16
-
-
0033766480
-
A gated channel into the proteasome core particle
-
M. Groll, M. Bajorek, A. Köhler, L. Moroder, D.M. Rubin, R. Huber, M.H. Glickman, and D. Finley A gated channel into the proteasome core particle Nat. Struct. Biol. 7 2000 1062 1067
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 1062-1067
-
-
Groll, M.1
Bajorek, M.2
Köhler, A.3
Moroder, L.4
Rubin, D.M.5
Huber, R.6
Glickman, M.H.7
Finley, D.8
-
17
-
-
70349546862
-
Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution
-
L.J. Holt, B.B. Tuch, J. Villén, A.D. Johnson, S.P. Gygi, and D.O. Morgan Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution Science 325 2009 1682 1686
-
(2009)
Science
, vol.325
, pp. 1682-1686
-
-
Holt, L.J.1
Tuch, B.B.2
Villén, J.3
Johnson, A.D.4
Gygi, S.P.5
Morgan, D.O.6
-
18
-
-
0035958083
-
The yeast hsp70 homologue Ssa is required for translation and interacts with Sis1 and Pab1 on translating ribosomes
-
L.E. Horton, P. James, E.A. Craig, and J.O. Hensold The yeast hsp70 homologue Ssa is required for translation and interacts with Sis1 and Pab1 on translating ribosomes J. Biol. Chem. 276 2001 14426 14433
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 14426-14433
-
-
Horton, L.E.1
James, P.2
Craig, E.A.3
Hensold, J.O.4
-
19
-
-
69249240179
-
Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis
-
A. Huber, B. Bodenmiller, A. Uotila, M. Stahl, S. Wanka, B. Gerrits, R. Aebersold, and R. Loewith Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis Genes Dev. 23 2009 1929 1943
-
(2009)
Genes Dev.
, vol.23
, pp. 1929-1943
-
-
Huber, A.1
Bodenmiller, B.2
Uotila, A.3
Stahl, M.4
Wanka, S.5
Gerrits, B.6
Aebersold, R.7
Loewith, R.8
-
20
-
-
36749010218
-
The Age of Crosstalk: Phosphorylation, Ubiquitination, and Beyond
-
DOI 10.1016/j.molcel.2007.11.019, PII S1097276507007988
-
T. Hunter The age of crosstalk: phosphorylation, ubiquitination, and beyond Mol. Cell 28 2007 730 738 (Pubitemid 350217067)
-
(2007)
Molecular Cell
, vol.28
, Issue.5
, pp. 730-738
-
-
Hunter, T.1
-
21
-
-
66149087343
-
Lessons from fungal F-box proteins
-
W. Jonkers, and M. Rep Lessons from fungal F-box proteins Eukaryot. Cell 8 2009 677 695
-
(2009)
Eukaryot. Cell
, vol.8
, pp. 677-695
-
-
Jonkers, W.1
Rep, M.2
-
22
-
-
34248354813
-
The yeast ubiquitin ligase SCFMet30: Connecting environmental and intracellular conditions to cell division
-
P. Kaiser, N.Y. Su, J.L. Yen, I. Ouni, and K. Flick The yeast ubiquitin ligase SCFMet30: connecting environmental and intracellular conditions to cell division Cell Div. 1 2006 16
-
(2006)
Cell Div.
, vol.1
, pp. 16
-
-
Kaiser, P.1
Su, N.Y.2
Yen, J.L.3
Ouni, I.4
Flick, K.5
-
23
-
-
77954947810
-
The HSP70 chaperone machinery: J proteins as drivers of functional specificity
-
H.H. Kampinga, and E.A. Craig The HSP70 chaperone machinery: J proteins as drivers of functional specificity Nat. Rev. Mol. Cell Biol. 11 2010 579 592
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 579-592
-
-
Kampinga, H.H.1
Craig, E.A.2
-
24
-
-
82455179484
-
Systematic and quantitative assessment of the ubiquitin-modified proteome
-
W. Kim, E.J. Bennett, E.L. Huttlin, A. Guo, J. Li, A. Possemato, M.E. Sowa, R. Rad, J. Rush, and M.J. Comb Systematic and quantitative assessment of the ubiquitin-modified proteome Mol. Cell 44 2011 325 340
-
(2011)
Mol. Cell
, vol.44
, pp. 325-340
-
-
Kim, W.1
Bennett, E.J.2
Huttlin, E.L.3
Guo, A.4
Li, J.5
Possemato, A.6
Sowa, M.E.7
Rad, R.8
Rush, J.9
Comb, M.J.10
-
25
-
-
65349155149
-
Weak functional constraints on phosphoproteomes
-
C.R. Landry, E.D. Levy, and S.W. Michnick Weak functional constraints on phosphoproteomes Trends Genet. 25 2009 193 197
-
(2009)
Trends Genet.
, vol.25
, pp. 193-197
-
-
Landry, C.R.1
Levy, E.D.2
Michnick, S.W.3
-
26
-
-
77950553742
-
Evolutionary tinkering with conserved components of a transcriptional regulatory network
-
H. Lavoie, H. Hogues, J. Mallick, A. Sellam, A. Nantel, and M. Whiteway Evolutionary tinkering with conserved components of a transcriptional regulatory network PLoS Biol. 8 2010 e1000329
-
(2010)
PLoS Biol.
, vol.8
, pp. 1000329
-
-
Lavoie, H.1
Hogues, H.2
Mallick, J.3
Sellam, A.4
Nantel, A.5
Whiteway, M.6
-
28
-
-
48149087568
-
Non-functional phosphorylations?
-
G.E. Lienhard Non-functional phosphorylations? Trends Biochem. Sci. 33 2008 351 352
-
(2008)
Trends Biochem. Sci.
, vol.33
, pp. 351-352
-
-
Lienhard, G.E.1
-
29
-
-
0034598832
-
Evidence for stabilizing selection in a eukaryotic enhancer element
-
DOI 10.1038/35000615
-
M.Z. Ludwig, C. Bergman, N.H. Patel, and M. Kreitman Evidence for stabilizing selection in a eukaryotic enhancer element Nature 403 2000 564 567 (Pubitemid 30082204)
-
(2000)
Nature
, vol.403
, Issue.6769
, pp. 564-567
-
-
Ludwig, M.Z.1
Bergman, C.2
Patel, N.H.3
KreLtman, M.4
-
30
-
-
77956048943
-
A toolkit of protein-fragment complementation assays for studying and dissecting large-scale and dynamic protein-protein interactions in living cells
-
S.W. Michnick, P.H. Ear, C. Landry, M.K. Malleshaiah, and V. Messier A toolkit of protein-fragment complementation assays for studying and dissecting large-scale and dynamic protein-protein interactions in living cells Methods Enzymol. 470 2010 335 368
-
(2010)
Methods Enzymol.
, vol.470
, pp. 335-368
-
-
Michnick, S.W.1
Ear, P.H.2
Landry, C.3
Malleshaiah, M.K.4
Messier, V.5
-
31
-
-
77957875163
-
Moving from transcriptional to phospho-evolution: Generalizing regulatory evolution?
-
A.M. Moses, and C.R. Landry Moving from transcriptional to phospho-evolution: generalizing regulatory evolution? Trends Genet. 26 2010 462 467
-
(2010)
Trends Genet.
, vol.26
, pp. 462-467
-
-
Moses, A.M.1
Landry, C.R.2
-
32
-
-
36749051222
-
Regulatory evolution in proteins by turnover and lineage-specific changes of cyclin-dependent kinase consensus sites
-
DOI 10.1073/pnas.0700997104
-
A.M. Moses, M.E. Liku, J.J. Li, and R. Durbin Regulatory evolution in proteins by turnover and lineage-specific changes of cyclin-dependent kinase consensus sites Proc. Natl. Acad. Sci. USA 104 2007 17713 17718 (Pubitemid 350210900)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.45
, pp. 17713-17718
-
-
Moses, A.M.1
Liku, M.E.2
Li, J.J.3
Durbin, R.4
-
33
-
-
64549122329
-
Computational studies of protein regulation by post-translational phosphorylation
-
A. Narayanan, and M.P. Jacobson Computational studies of protein regulation by post-translational phosphorylation Curr. Opin. Struct. Biol. 19 2009 156 163
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 156-163
-
-
Narayanan, A.1
Jacobson, M.P.2
-
34
-
-
20444414545
-
Linear motifs: Evolutionary interaction switches
-
DOI 10.1016/j.febslet.2005.04.005, PII S0014579305004618
-
V. Neduva, and R.B. Russell Linear motifs: evolutionary interaction switches FEBS Lett. 579 2005 3342 3345 (Pubitemid 40804684)
-
(2005)
FEBS Letters
, vol.579
, Issue.15
, pp. 3342-3345
-
-
Neduva, V.1
Russell, R.B.2
-
35
-
-
4444353636
-
Regulation of protein kinases: Controlling activity through activation segment conformation
-
DOI 10.1016/j.molcel.2004.08.024, PII S1097276504004800
-
B. Nolen, S. Taylor, and G. Ghosh Regulation of protein kinases; controlling activity through activation segment conformation Mol. Cell 15 2004 661 675 (Pubitemid 39194898)
-
(2004)
Molecular Cell
, vol.15
, Issue.5
, pp. 661-675
-
-
Nolen, B.1
Taylor, S.2
Ghosh, G.3
-
38
-
-
11244351579
-
Function and regulation of cullin-RING ubiquitin ligases
-
DOI 10.1038/nrm1547
-
M.D. Petroski, and R.J. Deshaies Function and regulation of cullin-RING ubiquitin ligases Nat. Rev. Mol. Cell Biol. 6 2005 9 20 (Pubitemid 40064895)
-
(2005)
Nature Reviews Molecular Cell Biology
, vol.6
, Issue.1
, pp. 9-20
-
-
Petroski, M.D.1
Deshaies, R.J.2
-
39
-
-
84857390643
-
Conformational switching of the molecular chaperone Hsp90 via regulated phosphorylation
-
J. Soroka, S.K. Wandinger, N. Mäusbacher, T. Schreiber, K. Richter, H. Daub, and J. Buchner Conformational switching of the molecular chaperone Hsp90 via regulated phosphorylation Mol. Cell 45 2012 517 528
-
(2012)
Mol. Cell
, vol.45
, pp. 517-528
-
-
Soroka, J.1
Wandinger, S.K.2
Mäusbacher, N.3
Schreiber, T.4
Richter, K.5
Daub, H.6
Buchner, J.7
-
40
-
-
70349972517
-
Global analysis of the yeast osmotic stress response by quantitative proteomics
-
B. Soufi, C.D. Kelstrup, G. Stoehr, F. Fröhlich, T.C. Walther, and J.V. Olsen Global analysis of the yeast osmotic stress response by quantitative proteomics Mol. Biosyst. 5 2009 1337 1346
-
(2009)
Mol. Biosyst.
, vol.5
, pp. 1337-1346
-
-
Soufi, B.1
Kelstrup, C.D.2
Stoehr, G.3
Fröhlich, F.4
Walther, T.C.5
Olsen, J.V.6
-
41
-
-
78651296878
-
PhosphoGRID: A database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae
-
C. Stark, T.C. Su, A. Breitkreutz, P. Lourenco, M. Dahabieh, B.J. Breitkreutz, M. Tyers, and I. Sadowski PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae Database (Oxford) 2010 2010 bap026
-
(2010)
Database (Oxford)
, vol.2010
, pp. 026
-
-
Stark, C.1
Su, T.C.2
Breitkreutz, A.3
Lourenco, P.4
Dahabieh, M.5
Breitkreutz, B.J.6
Tyers, M.7
Sadowski, I.8
-
42
-
-
78651344377
-
3did: Identification and classification of domain-based interactions of known three-dimensional structure
-
Database Issue
-
A. Stein, A. Céol, and P. Aloy 3did: identification and classification of domain-based interactions of known three-dimensional structure Nucleic Acids Res. 39 Database issue 2011 D718 D723
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Stein, A.1
Céol, A.2
Aloy, P.3
-
43
-
-
0034610814
-
The language of covalent histone modifications
-
DOI 10.1038/47412
-
B.D. Strahl, and C.D. Allis The language of covalent histone modifications Nature 403 2000 41 45 (Pubitemid 30038513)
-
(2000)
Nature
, vol.403
, Issue.6765
, pp. 41-45
-
-
Strahl, B.D.1
Allis, C.D.2
-
44
-
-
77953916528
-
HSP90 at the hub of protein homeostasis: Emerging mechanistic insights
-
M. Taipale, D.F. Jarosz, and S. Lindquist HSP90 at the hub of protein homeostasis: emerging mechanistic insights Nat. Rev. Mol. Cell Biol. 11 2010 515 528
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 515-528
-
-
Taipale, M.1
Jarosz, D.F.2
Lindquist, S.3
-
45
-
-
70349526350
-
Comparative analysis reveals conserved protein phosphorylation networks implicated in multiple diseases
-
C.S. Tan, B. Bodenmiller, A. Pasculescu, M. Jovanovic, M.O. Hengartner, C. Jorgensen, G.D. Bader, R. Aebersold, T. Pawson, and R. Linding Comparative analysis reveals conserved protein phosphorylation networks implicated in multiple diseases Sci. Signal. 2 2009 ra39
-
(2009)
Sci. Signal.
, vol.2
, pp. 39
-
-
Tan, C.S.1
Bodenmiller, B.2
Pasculescu, A.3
Jovanovic, M.4
Hengartner, M.O.5
Jorgensen, C.6
Bader, G.D.7
Aebersold, R.8
Pawson, T.9
Linding, R.10
-
46
-
-
33749173831
-
Evolution of alternative transcriptional circuits with identical logic
-
DOI 10.1038/nature05099, PII NATURE05099
-
A.E. Tsong, B.B. Tuch, H. Li, and A.D. Johnson Evolution of alternative transcriptional circuits with identical logic Nature 443 2006 415 420 (Pubitemid 44477273)
-
(2006)
Nature
, vol.443
, Issue.7110
, pp. 415-420
-
-
Tsong, A.E.1
Tuch, B.B.2
Li, H.3
Johnson, A.D.4
-
47
-
-
48249124644
-
Protein complex evolution does not involve extensive network rewiring
-
T.J. van Dam, and B. Snel Protein complex evolution does not involve extensive network rewiring PLoS Comput. Biol. 4 2008 e1000132
-
(2008)
PLoS Comput. Biol.
, vol.4
, pp. 1000132
-
-
Van Dam, T.J.1
Snel, B.2
-
48
-
-
56549087988
-
Neutralism and selectionism: A network-based reconciliation
-
DOI 10.1038/nrg2473, PII NRG2473
-
A. Wagner Neutralism and selectionism: a network-based reconciliation Nat. Rev. Genet. 9 2008 965 974 (Pubitemid 50316424)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.12
, pp. 965-974
-
-
Wagner, A.1
-
49
-
-
80054033461
-
A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles
-
M111.013284
-
S.A. Wagner, P. Beli, B.T. Weinert, M.L. Nielsen, J. Cox, M. Mann, and C. Choudhary A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles Mol. Cell. Proteomics 10 2011 M111.013284
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Wagner, S.A.1
Beli, P.2
Weinert, B.T.3
Nielsen, M.L.4
Cox, J.5
Mann, M.6
Choudhary, C.7
-
50
-
-
31444454302
-
The phosphatase Ppt1 is a dedicated regulator of the molecular chaperone Hsp90
-
DOI 10.1038/sj.emboj.7600930, PII 7600930
-
S.K. Wandinger, M.H. Suhre, H. Wegele, and J. Buchner The phosphatase Ppt1 is a dedicated regulator of the molecular chaperone Hsp90 EMBO J. 25 2006 367 376 (Pubitemid 43152857)
-
(2006)
EMBO Journal
, vol.25
, Issue.2
, pp. 367-376
-
-
Wandinger, S.K.1
Suhre, M.H.2
Wegele, H.3
Buchner, J.4
-
51
-
-
79960797509
-
Proteome-wide mapping of the Drosophila acetylome demonstrates a high degree of conservation of lysine acetylation
-
B.T. Weinert, S.A. Wagner, H. Horn, P. Henriksen, W.R. Liu, J.V. Olsen, L.J. Jensen, and C. Choudhary Proteome-wide mapping of the Drosophila acetylome demonstrates a high degree of conservation of lysine acetylation Sci. Signal. 4 2011 ra48
-
(2011)
Sci. Signal.
, vol.4
, pp. 48
-
-
Weinert, B.T.1
Wagner, S.A.2
Horn, H.3
Henriksen, P.4
Liu, W.R.5
Olsen, J.V.6
Jensen, L.J.7
Choudhary, C.8
-
52
-
-
33748416853
-
A Recurrent Phospho-Sumoyl Switch in Transcriptional Repression and Beyond
-
DOI 10.1016/j.molcel.2006.08.009, PII S1097276506005697
-
X.J. Yang, and S. Grégoire A recurrent phospho-sumoyl switch in transcriptional repression and beyond Mol. Cell 23 2006 779 786 (Pubitemid 44344522)
-
(2006)
Molecular Cell
, vol.23
, Issue.6
, pp. 779-786
-
-
Yang, X.-J.1
Gregoire, S.2
-
53
-
-
77954499965
-
Chemical genetics screen for enhancers of rapamycin identifies a specific inhibitor of an SCF family E3 ubiquitin ligase
-
Aghajan, M., Jonai, N., Flick, K., Fu, F., Luo, M., Cai, X., Ouni, I., Pierce, N., Tang, X., Lomenick, B., et al. (2010). Chemical genetics screen for enhancers of rapamycin identifies a specific inhibitor of an SCF family E3 ubiquitin ligase. Nat. Biotechnol. 28, 738-742.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 738-742
-
-
Aghajan, M.1
Jonai, N.2
Flick, K.3
Fu, F.4
Luo, M.5
Cai, X.6
Ouni, I.7
Pierce, N.8
Tang, X.9
Lomenick, B.10
-
54
-
-
77649268965
-
Posttranslational regulation impacts the fate of duplicated genes
-
Amoutzias, G.D., He, Y., Gordon, J., Mossialos, D., Oliver, S.G., and Van de Peer, Y. (2010). Posttranslational regulation impacts the fate of duplicated genes. Proc. Natl. Acad. Sci. USA 107, 2967-2971.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 2967-2971
-
-
Amoutzias, G.D.1
He, Y.2
Gordon, J.3
Mossialos, D.4
Oliver, S.G.5
Van De Peer, Y.6
-
55
-
-
33749853607
-
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
-
DOI 10.1038/nbt1240, PII NBT1240
-
Beausoleil, S.A., Villén, J., Gerber, S.A., Rush, J., and Gygi, S.P. (2006). A probability-based approach for high-throughput protein phosphorylation analysis and site localization. Nat. Biotechnol. 24, 1285-1292. (Pubitemid 44564776)
-
(2006)
Nature Biotechnology
, vol.24
, Issue.10
, pp. 1285-1292
-
-
Beausoleil, S.A.1
Villen, J.2
Gerber, S.A.3
Rush, J.4
Gygi, S.P.5
-
56
-
-
70350704659
-
A general life-death selection strategy for dissecting protein functions
-
Ear, P.H., and Michnick, S.W. (2009). A general life-death selection strategy for dissecting protein functions. Nat. Methods 6, 813-816.
-
(2009)
Nat. Methods
, vol.6
, pp. 813-816
-
-
Ear, P.H.1
Michnick, S.W.2
-
57
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
DOI 10.1093/nar/gkh340
-
Edgar, R.C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797. (Pubitemid 38832724)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
58
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
DOI 10.1038/nmeth1019, PII NMETH1019
-
Elias, J.E., and Gygi, S.P. (2007). Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 4, 207-214. (Pubitemid 46358868)
-
(2007)
Nature Methods
, vol.4
, Issue.3
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
59
-
-
75549089192
-
GWIDD: Genome-wide protein docking database
-
(Database issue)
-
Kundrotas, P.J., Zhu, Z., and Vakser, I.A. (2010). GWIDD: Genome-wide protein docking database. Nucleic Acids Res. 38 (Database issue), D513-D517.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Kundrotas, P.J.1
Zhu, Z.2
Vakser, I.A.3
-
60
-
-
0242458482
-
Protein disorder prediction: Implications for structural proteomics
-
DOI 10.1016/j.str.2003.10.002
-
Linding, R., Jensen, L.J., Diella, F., Bork, P., Gibson, T.J., and Russell, R.B. (2003). Protein disorder prediction: implications for structural proteomics. Structure 11, 1453-1459. (Pubitemid 37412427)
-
(2003)
Structure
, vol.11
, Issue.11
, pp. 1453-1459
-
-
Linding, R.1
Jensen, L.J.2
Diella, F.3
Bork, P.4
Gibson, T.J.5
Russell, R.B.6
-
61
-
-
77956048943
-
A toolkit of protein-fragment complementation assays for studying and dissecting large-scale and dynamic protein-protein interactions in living cells
-
Michnick, S.W., Ear, P.H., Landry, C., Malleshaiah, M.K., and Messier, V. (2010). A toolkit of protein-fragment complementation assays for studying and dissecting large-scale and dynamic protein-protein interactions in living cells. Methods Enzymol. 470, 335-368.
-
(2010)
Methods Enzymol.
, vol.470
, pp. 335-368
-
-
Michnick, S.W.1
Ear, P.H.2
Landry, C.3
Malleshaiah, M.K.4
Messier, V.5
-
62
-
-
43249104982
-
PSAIA - Protein structure and interaction analyzer
-
Mihel, J., Sikić, M., Tomić, S., Jeren, B., and Vlahovicek, K. (2008). PSAIA - protein structure and interaction analyzer. BMC Struct. Biol. 8, 21.
-
(2008)
BMC Struct. Biol.
, vol.8
, pp. 21
-
-
Mihel, J.1
Sikić, M.2
Tomić, S.3
Jeren, B.4
Vlahovicek, K.5
-
63
-
-
77952986553
-
Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs
-
Mok, J., Kim, P.M., Lam, H.Y., Piccirillo, S., Zhou, X., Jeschke, G.R., Sheridan, D.L., Parker, S.A., Desai, V., Jwa, M., et al. (2010). Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs. Sci. Signal. 3, ra12.
-
(2010)
Sci. Signal.
, vol.3
-
-
Mok, J.1
Kim, P.M.2
Lam, H.Y.3
Piccirillo, S.4
Zhou, X.5
Jeschke, G.R.6
Sheridan, D.L.7
Parker, S.A.8
Desai, V.9
Jwa, M.10
-
64
-
-
70049112107
-
Pushing structural information into the yeast interactome by high-throughput protein docking experiments
-
Mosca, R., Pons, C., Fernández-Recio, J., and Aloy, P. (2009). Pushing structural information into the yeast interactome by high-throughput protein docking experiments. PLoS Comput. Biol. 5, e1000490.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Mosca, R.1
Pons, C.2
Fernández-Recio, J.3
Aloy, P.4
-
65
-
-
78651296878
-
PhosphoGRID: A database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae
-
Stark, C., Su, T.C., Breitkreutz, A., Lourenco, P., Dahabieh, M., Breitkreutz, B.J., Tyers, M., and Sadowski, I. (2010). PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae. Database (Oxford) 2010, bap026.
-
(2010)
Database (Oxford)
, vol.2010
-
-
Stark, C.1
Su, T.C.2
Breitkreutz, A.3
Lourenco, P.4
Dahabieh, M.5
Breitkreutz, B.J.6
Tyers, M.7
Sadowski, I.8
-
66
-
-
78651344377
-
3did: Identification and classification of domain-based interactions of known three-dimensional structure
-
(Database issue)
-
Stein, A., Céol, A., and Aloy, P. (2011). 3did: identification and classification of domain-based interactions of known three-dimensional structure. Nucleic Acids Res. 39 (Database issue), D718-D723.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Stein, A.1
Céol, A.2
Aloy, P.3
|