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Volumn 84, Issue , 2016, Pages 15-19

CASP11 statistics and the prediction center evaluation system

Author keywords

CASP; Protein structure modelling; Protein structure prediction

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; EVALUATION AND FOLLOW UP; MEASUREMENT ACCURACY; PARAMETERS; PREDICTION; PREDICTION CENTER EVALUATION SYSTEM; PRIORITY JOURNAL; QUALITY CONTROL; RESIDUE RESIDUE CONTACT; SIMULATION; STATISTICS; TERTIARY STRUCTURE; BENCHMARKING; BIOLOGY; CHEMISTRY; COMPUTER GRAPHICS; HUMAN; INTERNATIONAL COOPERATION; INTERNET; MOLECULAR MODEL; PROCEDURES; PROTEIN CONFORMATION; PROTEIN FOLDING; SOFTWARE; STATISTICAL MODEL; STATISTICS AND NUMERICAL DATA;

EID: 84960355584     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.25005     Document Type: Article
Times cited : (42)

References (26)
  • 2
    • 84893010856 scopus 로고    scopus 로고
    • CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLL
    • Kryshtafovych A, Monastyrskyy B, Fidelis K. CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLL. Proteins 2014;82:7-13.
    • (2014) Proteins , vol.82 , pp. 7-13
    • Kryshtafovych, A.1    Monastyrskyy, B.2    Fidelis, K.3
  • 3
    • 0037324306 scopus 로고    scopus 로고
    • Improving the performance of DomainParser for structural domain partition using neural network
    • Guo JT, Xu D, Kim D, Xu Y. Improving the performance of DomainParser for structural domain partition using neural network. Nucleic Acids Res 2003;31:944-952.
    • (2003) Nucleic Acids Res , vol.31 , pp. 944-952
    • Guo, J.T.1    Xu, D.2    Kim, D.3    Xu, Y.4
  • 4
    • 34247619229 scopus 로고    scopus 로고
    • DDOMAIN: Dividing structures into domains using a normalized domain-domain interaction profile
    • Zhou H, Xue B, Zhou Y. DDOMAIN: dividing structures into domains using a normalized domain-domain interaction profile. Protein Sci 2007;16:947-955.
    • (2007) Protein Sci , vol.16 , pp. 947-955
    • Zhou, H.1    Xue, B.2    Zhou, Y.3
  • 6
    • 84856489442 scopus 로고    scopus 로고
    • HHblits: Lightning-fast iterative protein sequence searching by HMM-HMM alignment
    • Remmert M, Biegert A, Hauser A, Soding J. HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nat Methods 2012;9:173-175.
    • (2012) Nat Methods , vol.9 , pp. 173-175
    • Remmert, M.1    Biegert, A.2    Hauser, A.3    Soding, J.4
  • 7
    • 0036839162 scopus 로고    scopus 로고
    • MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison
    • Ortiz AR, Strauss CE, Olmea O. MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. Protein Sci 2002;11:2606-2621.
    • (2002) Protein Sci , vol.11 , pp. 2606-2621
    • Ortiz, A.R.1    Strauss, C.E.2    Olmea, O.3
  • 8
    • 0042622381 scopus 로고    scopus 로고
    • LGA: A method for finding 3D similarities in protein structures
    • Zemla A. LGA: a method for finding 3D similarities in protein structures. Nucleic Acids Res 2003;31:3370-3374.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3370-3374
    • Zemla, A.1
  • 9
    • 0035703310 scopus 로고    scopus 로고
    • Processing and evaluation of predictions in CASP4
    • Zemla A, Venclovas Moult J, Fidelis K. Processing and evaluation of predictions in CASP4. Proteins 2001;(Suppl 5):13-21.
    • (2001) Proteins , pp. 13-21
    • Zemla, A.1    Venclovas Moult, J.2    Fidelis, K.3
  • 13
    • 84871040640 scopus 로고    scopus 로고
    • CAD-score: A new contact area difference-based function for evaluation of protein structural models
    • Olechnovic K, Kulberkyte E, Venclovas C. CAD-score: a new contact area difference-based function for evaluation of protein structural models. Proteins 2013;81:149-162.
    • (2013) Proteins , vol.81 , pp. 149-162
    • Olechnovic, K.1    Kulberkyte, E.2    Venclovas, C.3
  • 14
    • 84885990516 scopus 로고    scopus 로고
    • LDDT: A local superposition-free score for comparing protein structures and models using distance difference tests
    • Mariani V, Biasini M, Barbato A, Schwede T. lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests. Bioinformatics 2013;29:2722-2728.
    • (2013) Bioinformatics , vol.29 , pp. 2722-2728
    • Mariani, V.1    Biasini, M.2    Barbato, A.3    Schwede, T.4
  • 16
    • 84892959896 scopus 로고    scopus 로고
    • Assessment of template-based protein structure predictions in CASP 10
    • Huang YJ, Mao B, Aramini JM, Montelione GT. Assessment of template-based protein structure predictions in CASP 10. Proteins 2014;82:43-56.
    • (2014) Proteins , vol.82 , pp. 43-56
    • Huang, Y.J.1    Mao, B.2    Aramini, J.M.3    Montelione, G.T.4
  • 18
    • 84892959104 scopus 로고    scopus 로고
    • Assessment of template-free modeling in CASP10 and ROLL
    • Tai CH, Bai H, Taylor TJ, Lee B. Assessment of template-free modeling in CASP10 and ROLL. Proteins 2014;82:57-83.
    • (2014) Proteins , vol.82 , pp. 57-83
    • Tai, C.H.1    Bai, H.2    Taylor, T.J.3    Lee, B.4
  • 19
    • 17644392830 scopus 로고    scopus 로고
    • TM-align: A protein structure alignment algorithm based on the TM-score
    • Zhang Y, Skolnick J. TM-align: a protein structure alignment algorithm based on the TM-score. Nucleic Acids Res 2005;33:2302-2309.
    • (2005) Nucleic Acids Res , vol.33 , pp. 2302-2309
    • Zhang, Y.1    Skolnick, J.2
  • 20
    • 84867347204 scopus 로고    scopus 로고
    • FlexE: Using elastic network models to compare models of protein structure
    • Perez A, Yang Z, Bahar I, Dill KA, MacCallum JL. FlexE: using elastic network models to compare models of protein structure. J Chem Theory Comput 2012;8:3985-3991.
    • (2012) J Chem Theory Comput , vol.8 , pp. 3985-3991
    • Perez, A.1    Yang, Z.2    Bahar, I.3    Dill, K.A.4    Maccallum, J.L.5
  • 21
    • 0033081846 scopus 로고    scopus 로고
    • A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment
    • Zemla A, Venclovas C, Fidelis K, Rost B. A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment. Proteins 1999;34:220-223.
    • (1999) Proteins , vol.34 , pp. 220-223
    • Zemla, A.1    Venclovas, C.2    Fidelis, K.3    Rost, B.4
  • 22
    • 84960155202 scopus 로고    scopus 로고
    • Methods of model accuracy estimation can help selecting the best models from decoy sets: Assessment of model accuracy estimations in CASP 11
    • 2015 Sep 7, [Epub ahead of print]
    • Kryshtafovych A, Barbato A, Monastyrskyy B, Fidelis K, Schwede T, Tramontano A. Methods of model accuracy estimation can help selecting the best models from decoy sets: Assessment of model accuracy estimations in CASP 11. Proteins 2015 Sep 7. doi: 10.1002/ prot.24919 [Epub ahead of print].
    • Proteins
    • Kryshtafovych, A.1    Barbato, A.2    Monastyrskyy, B.3    Fidelis, K.4    Schwede, T.5    Tramontano, A.6
  • 23
    • 84947707636 scopus 로고    scopus 로고
    • New encouraging developments in contact prediction: Assessment of the CASP11 results
    • 2015 Oct 16., [Epub ahead of print]
    • Monastyrskyy B, D’Andrea D, Fidelis K, Tramontano A, Kryshtafovych A. New encouraging developments in contact prediction: Assessment of the CASP11 results. Proteins 2015 Oct 16. doi: 10.1002/prot.24943 [Epub ahead of print].
    • Proteins
    • Monastyrskyy, B.1    D’Andrea, D.2    Fidelis, K.3    Tramontano, A.4    Kryshtafovych, A.5
  • 24
    • 30344479439 scopus 로고    scopus 로고
    • CASP6 data processing and automatic evaluation at the protein structure prediction center
    • Kryshtafovych A, Milostan M, Szajkowski L, Daniluk P, Fidelis K. CASP6 data processing and automatic evaluation at the protein structure prediction center. Proteins 2005;61:19-23.
    • (2005) Proteins , vol.61 , pp. 19-23
    • Kryshtafovych, A.1    Milostan, M.2    Szajkowski, L.3    Daniluk, P.4    Fidelis, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.