New tools and expanded data analysis capabilities at the protein structure prediction center

Proteins: Structure, Function and Genetics

Volumn 69, Issue SUPPL. 8, 2007, Pages 19-26

  Kryshtafovych, Andriy ^a   Prlic, Andreas ^b   Dmytriv, Zinoviy ^a   Daniluk, Pawel ^a   Milostan, Maciej ^c   Eyrich, Volker ^d   Hubbard, Tim ^b   Fidelis, Krzysztof ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^c POZNAN UNIVERSITY OF TECHNOLOGY   (Poland)

^d Och Spine at New York Presbyterian Hospitals   (United States)

Author keywords

CASP infrastructure; Evaluation methods; Protein structure prediction; SPICE

Indexed keywords

AMINO ACID SEQUENCE; COMPUTER PROGRAM; CONFERENCE PAPER; DATA ANALYSIS; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN STRUCTURE;

COMPUTATIONAL BIOLOGY; INTERNET; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEINS; SOFTWARE; STRUCTURE-ACTIVITY RELATIONSHIP;

EID: 36749028144     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.21653     Document Type: Conference Paper

References (9)

1. Kryshtafovych A, Milostan M, Szajkowski L, Daniluk P, Fidelis K. CASP6 data processing and automatic evaluation at the protein structure prediction center. Proteins 2005;61 (Suppl 7):19-23.
2. Eyrich VA, Kryshtafovych A, Milostan M, Fidelis K. System for accepting server predictions in CASP6. Proteins 2005;61 (Suppl 7):24-26.
3. Zemla A. LGA: a method for finding 3D similarities in protein structures. Nucleic Acids Res 2003;31:3370-3374.
4. Hvidsten TR, Kryshtafovych A, Komorowski J, Fidelis K. A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins. Bioinformatics 2003;19 (Suppl 2):II81-II91.
5. Ortiz AR, Strauss CE, Olmea O. MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. Protein Sci 2002;11:2606-2621.
6. Zemla A, Venclovas C, Moult J, Fidelis K. Processing and evaluation of predictions in CASP4. Proteins 2001;45 (Suppl 5):13-21.
7. Sayle RA, Milner-White EJ. RASMOL: biomolecular graphics for all. Trends Biochem Sci 1995;20:374.
8. Prlic A, Down TA, Hubbard TJ. Adding some SPICE to DAS. Bioinformatics 2005;21 (Suppl 2):ii40-ii41.
9. Dowell RD, Jokerst RM, Day A, Eddy SR, Stein L. The distributed annotation system. BMC Bioinformatics 2001;2:7.