메뉴 건너뛰기




Volumn 84, Issue S1, 2016, Pages 349-369

Methods of model accuracy estimation can help selecting the best models from decoy sets: Assessment of model accuracy estimations in CASP11

Author keywords

CASP; EMA; estimation of model accuracy; model quality assessment; protein structure modeling; protein structure prediction; QA

Indexed keywords

PROTEIN;

EID: 84960155202     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.24919     Document Type: Article
Times cited : (63)

References (17)
  • 2
    • 62849107262 scopus 로고    scopus 로고
    • Protein structure prediction and model quality assessment
    • Kryshtafovych A, Fidelis K. Protein structure prediction and model quality assessment. Drug Discov Today 2009;14:386–393.
    • (2009) Drug Discov Today , vol.14 , pp. 386-393
    • Kryshtafovych, A.1    Fidelis, K.2
  • 3
    • 80855131663 scopus 로고    scopus 로고
    • Evaluation of model quality predictions in CASP9
    • Kryshtafovych A, Fidelis K, Tramontano A. Evaluation of model quality predictions in CASP9. Proteins 2011;79 (Suppl 10):91–106.
    • (2011) Proteins , vol.79 , pp. 91-106
    • Kryshtafovych, A.1    Fidelis, K.2    Tramontano, A.3
  • 4
    • 36749043625 scopus 로고    scopus 로고
    • Assessment of predictions in the model quality assessment category
    • Cozzetto D, Kryshtafovych A, Ceriani M, Tramontano A. Assessment of predictions in the model quality assessment category. Proteins 2007; 69 (Suppl 8):175–183.
    • (2007) Proteins , vol.69 , pp. 175-183
    • Cozzetto, D.1    Kryshtafovych, A.2    Ceriani, M.3    Tramontano, A.4
  • 5
    • 74249102516 scopus 로고    scopus 로고
    • Evaluation of CASP8 model quality predictions
    • Cozzetto D, Kryshtafovych A, Tramontano A. Evaluation of CASP8 model quality predictions. Proteins 2009;77 (Suppl 9):157–166.
    • (2009) Proteins , vol.77 , pp. 157-166
    • Cozzetto, D.1    Kryshtafovych, A.2    Tramontano, A.3
  • 7
    • 0042622381 scopus 로고    scopus 로고
    • LGA: a method for finding 3D similarities in protein structures
    • Zemla A. LGA: a method for finding 3D similarities in protein structures. Nucleic Acids Res 2003;31:3370–3374.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3370-3374
    • Zemla, A.1
  • 8
    • 84885990516 scopus 로고    scopus 로고
    • lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests
    • Mariani V, Biasini M, Barbato A, Schwede T. lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests. Bioinformatics 2013;29:2722–2728.
    • (2013) Bioinformatics , vol.29 , pp. 2722-2728
    • Mariani, V.1    Biasini, M.2    Barbato, A.3    Schwede, T.4
  • 9
    • 84871040640 scopus 로고    scopus 로고
    • CAD-score: a new contact area difference-based function for evaluation of protein structural models
    • Olechnovic K, Kulberkyte E, Venclovas C. CAD-score: a new contact area difference-based function for evaluation of protein structural models. Proteins 2013;81:149–162.
    • (2013) Proteins , vol.81 , pp. 149-162
    • Olechnovic, K.1    Kulberkyte, E.2    Venclovas, C.3
  • 10
    • 84893010856 scopus 로고    scopus 로고
    • CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLL
    • Kryshtafovych A, Monastyrskyy B, Fidelis K. CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLL. Proteins 2014;82(Suppl 2):7–13.
    • (2014) Proteins , vol.82 , pp. 7-13
    • Kryshtafovych, A.1    Monastyrskyy, B.2    Fidelis, K.3
  • 11
    • 84883470542 scopus 로고    scopus 로고
    • The ModFOLD4 server for the quality assessment of 3D protein models
    • McGuffin LJ, Buenavista MT, Roche DB. The ModFOLD4 server for the quality assessment of 3D protein models. Nucleic Acids Res 2013;41(Web Server issue):W368–W372.
    • (2013) Nucleic Acids Res , vol.41 , Issue.Web Server issue , pp. W368-W372
    • McGuffin, L.J.1    Buenavista, M.T.2    Roche, D.B.3
  • 12
    • 84880222478 scopus 로고    scopus 로고
    • PconsD: ultra rapid, accurate model quality assessment for protein structure prediction
    • Skwark MJ, Elofsson A. PconsD: ultra rapid, accurate model quality assessment for protein structure prediction. Bioinformatics 2013;29:1817–1818.
    • (2013) Bioinformatics , vol.29 , pp. 1817-1818
    • Skwark, M.J.1    Elofsson, A.2
  • 13
    • 84865844930 scopus 로고    scopus 로고
    • Improved model quality assessment using ProQ2
    • Ray A, Lindahl E, Wallner B. Improved model quality assessment using ProQ2. BMC Bioinform 2012;13:224.
    • (2012) BMC Bioinform , vol.13 , pp. 224.
    • Ray, A.1    Lindahl, E.2    Wallner, B.3
  • 15
    • 67650358909 scopus 로고    scopus 로고
    • QMEAN server for protein model quality estimation
    • Benkert P, Kunzli M, Schwede T. QMEAN server for protein model quality estimation. Nucleic Acids Res 2009;37(Web Server issue):W510–W514.
    • (2009) Nucleic Acids Res , vol.37 , Issue.Web Server issue , pp. W510-W514
    • Benkert, P.1    Kunzli, M.2    Schwede, T.3
  • 16
    • 0030767485 scopus 로고    scopus 로고
    • VERIFY3D: assessment of protein models with three-dimensional profiles
    • Eisenberg D, Luthy R, Bowie JU. VERIFY3D: assessment of protein models with three-dimensional profiles. Methods Enzymol 1997;277:396–404.
    • (1997) Methods Enzymol , vol.277 , pp. 396-404
    • Eisenberg, D.1    Luthy, R.2    Bowie, J.U.3
  • 17
    • 0030512440 scopus 로고    scopus 로고
    • Molecular replacement with NMR models using distance-derived pseudo B factors
    • Wilmanns M, Nilges M. Molecular replacement with NMR models using distance-derived pseudo B factors. Acta Crystallogr D Biol Crystallogr 1996;52(Part 5):973–982.
    • (1996) Acta Crystallogr D Biol Crystallogr , vol.52 , pp. 973-982
    • Wilmanns, M.1    Nilges, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.