-
6
-
-
13444279981
-
-
Kolodny, R.; Koehl, P.; Levitt, M. J. Mol. Biol. 2005, 346, 1173-1188
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 1173-1188
-
-
Kolodny, R.1
Koehl, P.2
Levitt, M.3
-
8
-
-
84995046262
-
-
Moult, J.; Pedersen, J. T.; Judson, R.; Fidelis, K. Proteins: Struct., Funct., Bioinf. 1995, 23, ii-iv
-
(1995)
Proteins: Struct., Funct., Bioinf.
, vol.23
-
-
Moult, J.1
Pedersen, J.T.2
Judson, R.3
Fidelis, K.4
-
10
-
-
1842471241
-
-
Wei, B. Q.; Weaver, L. H.; Ferrari, A. M.; Matthews, B. W.; Shoichet, B. K. J. Mol. Biol. 2004, 337, 1161-1182
-
(2004)
J. Mol. Biol.
, vol.337
, pp. 1161-1182
-
-
Wei, B.Q.1
Weaver, L.H.2
Ferrari, A.M.3
Matthews, B.W.4
Shoichet, B.K.5
-
12
-
-
36849048228
-
-
Henzler-Wildman, K. A.; Thai, V.; Lei, M.; Ott, M.; Wolf-Watz, M.; Fenn, T.; Pozharski, E.; Wilson, M. A.; Petsko, G. A.; Karplus, M.; Hubner, C. G.; Kern, D. Nature 2007, 450, 838-844
-
(2007)
Nature
, vol.450
, pp. 838-844
-
-
Henzler-Wildman, K.A.1
Thai, V.2
Lei, M.3
Ott, M.4
Wolf-Watz, M.5
Fenn, T.6
Pozharski, E.7
Wilson, M.A.8
Petsko, G.A.9
Karplus, M.10
Hubner, C.G.11
Kern, D.12
-
13
-
-
70350340728
-
-
Boehr, D. D.; Nussinov, R.; Wright, P. E. Nat. Chem. Biol. 2009, 5, 789-796
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 789-796
-
-
Boehr, D.D.1
Nussinov, R.2
Wright, P.E.3
-
14
-
-
0017776823
-
-
McCammon, J. A.; Gelin, B. R.; Karplus, M. Nature 1977, 267, 585-590
-
(1977)
Nature
, vol.267
, pp. 585-590
-
-
McCammon, J.A.1
Gelin, B.R.2
Karplus, M.3
-
16
-
-
0035132230
-
-
Atilgan, A. R.; Durell, S. R.; Jernigan, R. L.; Demirel, M. C.; Keskin, O.; Bahar, I. Biophys. J. 2001, 80, 505-15
-
(2001)
Biophys. J.
, vol.80
, pp. 505-515
-
-
Atilgan, A.R.1
Durell, S.R.2
Jernigan, R.L.3
Demirel, M.C.4
Keskin, O.5
Bahar, I.6
-
18
-
-
4043116913
-
-
Kovacs, J. A.; Chacon, P.; Abagyan, R. Proteins: Struct., Funct., Bioinf. 2004, 56, 661-668
-
(2004)
Proteins: Struct., Funct., Bioinf.
, vol.56
, pp. 661-668
-
-
Kovacs, J.A.1
Chacon, P.2
Abagyan, R.3
-
19
-
-
77956593836
-
-
Orellana, L.; Rueda, M.; Ferrer-Costa, C.; Lopez-Blanco, J. R.; Chacon, P.; Orozco, M. J. Chem. Theory Comput. 2010, 6, 2910-2923
-
(2010)
J. Chem. Theory Comput.
, vol.6
, pp. 2910-2923
-
-
Orellana, L.1
Rueda, M.2
Ferrer-Costa, C.3
Lopez-Blanco, J.R.4
Chacon, P.5
Orozco, M.6
-
20
-
-
66149167201
-
-
Kurkcuoglu, O.; Kurkcuoglu, Z.; Doruker, P.; Jernigan, R. L. Proteins: Struct., Funct., Bioinf. 2009, 75, 837-845
-
(2009)
Proteins: Struct., Funct., Bioinf.
, vol.75
, pp. 837-845
-
-
Kurkcuoglu, O.1
Kurkcuoglu, Z.2
Doruker, P.3
Jernigan, R.L.4
-
21
-
-
34248159870
-
-
Rueda, M.; Chacon, P.; Orozco, M. Structure 2007, 15, 565-575
-
(2007)
Structure
, vol.15
, pp. 565-575
-
-
Rueda, M.1
Chacon, P.2
Orozco, M.3
-
22
-
-
78649794361
-
-
Romo, T. D.; Grossfield, A. Proteins: Struct., Funct., Bioinf. 2011, 79, 23-34
-
(2011)
Proteins: Struct., Funct., Bioinf.
, vol.79
, pp. 23-34
-
-
Romo, T.D.1
Grossfield, A.2
-
24
-
-
80855147416
-
-
MacCallum, J. L.; Perez, A.; Schnieders, M. J.; Hua, L.; Jacobson, M. P.; Dill, K. A. Proteins: Struct., Funct., Bioinf. 2011, 79, 74-90
-
(2011)
Proteins: Struct., Funct., Bioinf.
, vol.79
, pp. 74-90
-
-
MacCallum, J.L.1
Perez, A.2
Schnieders, M.J.3
Hua, L.4
Jacobson, M.P.5
Dill, K.A.6
-
26
-
-
0034333103
-
-
Hinsen, K.; Petrescu, A.-J.; Dellerue, S.; Bellissent-Funel, M.-C.; Kneller, G. R. Chem. Phys. 2000, 261, 25-37
-
(2000)
Chem. Phys.
, vol.261
, pp. 25-37
-
-
Hinsen, K.1
Petrescu, A.-J.2
Dellerue, S.3
Bellissent-Funel, M.-C.4
Kneller, G.R.5
-
27
-
-
58849116413
-
-
Riccardi, D.; Cui, Q.; Phillips, G. N. Biophys. J. 2009, 96, 464-475
-
(2009)
Biophys. J.
, vol.96
, pp. 464-475
-
-
Riccardi, D.1
Cui, Q.2
Phillips, G.N.3
-
29
-
-
68149141470
-
-
Yang, L.; Song, G.; Jernigan, R. L. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 12347-12352
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 12347-12352
-
-
Yang, L.1
Song, G.2
Jernigan, R.L.3
-
30
-
-
0033557178
-
-
Hinsen, K.; Thomas, A.; Field, M. J. Proteins: Struct., Funct., Bioinf. 1999, 34, 369-382
-
(1999)
Proteins: Struct., Funct., Bioinf.
, vol.34
, pp. 369-382
-
-
Hinsen, K.1
Thomas, A.2
Field, M.J.3
-
31
-
-
33748469301
-
-
Lu, M.; Poon, B.; Ma, J. J. Chem. Theory Comput. 2006, 2, 464-471
-
(2006)
J. Chem. Theory Comput.
, vol.2
, pp. 464-471
-
-
Lu, M.1
Poon, B.2
Ma, J.3
-
32
-
-
79957788878
-
-
Bakan, A.; Meireles, L. M.; Bahar, I. Bioinformatics 2011, 27, 1575-1577
-
(2011)
Bioinformatics
, vol.27
, pp. 1575-1577
-
-
Bakan, A.1
Meireles, L.M.2
Bahar, I.3
-
33
-
-
84867350802
-
-
version 10; University of California: San Francisco, CA
-
AMBER; version 10; University of California: San Francisco, CA, 2008.
-
(2008)
AMBER
-
-
-
34
-
-
0004016501
-
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. J. Chem. Phys. 1983, 79, 926-935
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
37
-
-
33846823909
-
-
Darden, T.; York, D.; Pedersen, L. J. Chem. Phys. 1993, 98, 10089-10092
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
38
-
-
0029170114
-
-
Cheatham, T. E. I.; Miller, J. L.; Fox, T.; Darden, T. A.; Kollman, P. A. J. Am. Chem. Soc. 1995, 117, 4193-4194
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 4193-4194
-
-
Cheatham, T.E.I.1
Miller, J.L.2
Fox, T.3
Darden, T.A.4
Kollman, P.A.5
-
39
-
-
33646940952
-
-
Ryckaert, J.; Ciccotti, G.; Berendsen, H. J. Comput. Phys. 1977, 23, 327-341
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.1
Ciccotti, G.2
Berendsen, H.3
-
41
-
-
0026320866
-
-
Frauenfelder, H.; Sligar, S.; Wolynes, P. Science 1991, 254, 1598-603
-
(1991)
Science
, vol.254
, pp. 1598-1603
-
-
Frauenfelder, H.1
Sligar, S.2
Wolynes, P.3
-
42
-
-
0028335096
-
-
Gerstein, M.; Lesk, A. M.; Chothia, C. Biochemistry 1994, 33, 6739-6749
-
(1994)
Biochemistry
, vol.33
, pp. 6739-6749
-
-
Gerstein, M.1
Lesk, A.M.2
Chothia, C.3
-
43
-
-
0041852853
-
-
Daniel, R.; Dunn, R.; Finney, J.; Smith, J. Annu. Rev. Biophys. Biomol. Struct. 2003, 32, 69-92
-
(2003)
Annu. Rev. Biophys. Biomol. Struct.
, vol.32
, pp. 69-92
-
-
Daniel, R.1
Dunn, R.2
Finney, J.3
Smith, J.4
-
44
-
-
0035996975
-
-
Keskin, O.; Durell, S. R.; Bahar, I.; Jernigan, R. L.; Covell, D. G. Biophys. J. 2002, 83, 663-680
-
(2002)
Biophys. J.
, vol.83
, pp. 663-680
-
-
Keskin, O.1
Durell, S.R.2
Bahar, I.3
Jernigan, R.L.4
Covell, D.G.5
-
45
-
-
80053142382
-
-
Meireles, L.; Gur, M.; Bakan, A.; Bahar, I. Protein Sci. 2011, 20, 1645-1658
-
(2011)
Protein Sci.
, vol.20
, pp. 1645-1658
-
-
Meireles, L.1
Gur, M.2
Bakan, A.3
Bahar, I.4
-
46
-
-
77952938726
-
-
Bahar, I.; Lezon, T. R.; Yang, L.-W.; Eyal, E. Annu. Rev. Biophys. 2010, 39, 23-42
-
(2010)
Annu. Rev. Biophys.
, vol.39
, pp. 23-42
-
-
Bahar, I.1
Lezon, T.R.2
Yang, L.-W.3
Eyal, E.4
-
47
-
-
74249121740
-
-
MacCallum, J. L.; Hua, L.; Schnieders, M. J.; Pande, V. S.; Jacobson, M. P.; Dill, K. A. Proteins: Struct., Funct., Bioinf. 2009, 77, 66-80
-
(2009)
Proteins: Struct., Funct., Bioinf.
, vol.77
, pp. 66-80
-
-
MacCallum, J.L.1
Hua, L.2
Schnieders, M.J.3
Pande, V.S.4
Jacobson, M.P.5
Dill, K.A.6
|