-
1
-
-
84857973852
-
Systematic analysis of protein pools, isoforms, and modifications affecting turnover and subcellular localization
-
Ahmad Y, Boisvert FM, Lundberg E, Uhlen M, Lamond AI, (2012) Systematic analysis of protein pools, isoforms, and modifications affecting turnover and subcellular localization. Mol Cell Proteomics 11: M111.013680
-
(2012)
Mol Cell Proteomics
, vol.11
, pp. M111013680
-
-
Ahmad, Y.1
Boisvert, F.M.2
Lundberg, E.3
Uhlen, M.4
Lamond, A.I.5
-
2
-
-
66249126298
-
Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans
-
Arnesen T, Van Damme P, Polevoda B, Helsens K, Evjenth R, Colaert N, Varhaug JE, Vandekerckhove J, Lillehaug JR, Sherman F, Gevaert K, (2009) Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans. Proc Natl Acad Sci USA 106: 8157-8162
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 8157-8162
-
-
Arnesen, T.1
Van Damme, P.2
Polevoda, B.3
Helsens, K.4
Evjenth, R.5
Colaert, N.6
Varhaug, J.E.7
Vandekerckhove, J.8
Lillehaug, J.R.9
Sherman, F.10
Gevaert, K.11
-
3
-
-
79958072421
-
Intrinsically disordered proteins: Regulation and disease
-
Babu MM, van der Lee R, de Groot NS, Gsponer J, (2011) Intrinsically disordered proteins: Regulation and disease. Curr Opin Struct Biol 21: 432-440
-
(2011)
Curr Opin Struct Biol
, vol.21
, pp. 432-440
-
-
Babu, M.M.1
Van Der Lee, R.2
De Groot, N.S.3
Gsponer, J.4
-
4
-
-
67650484732
-
PRIDE Converter: Making proteomics data-sharing easy
-
Barsnes H, Vizcaino JA, Eidhammer I, Martens L, (2009) PRIDE Converter: Making proteomics data-sharing easy. Nat Biotechnol 27: 598-599
-
(2009)
Nat Biotechnol
, vol.27
, pp. 598-599
-
-
Barsnes, H.1
Vizcaino, J.A.2
Eidhammer, I.3
Martens, L.4
-
5
-
-
84857963102
-
A quantitative spatial proteomics analysis of proteome turnover in human cells
-
Boisvert FM, Ahmad Y, Gierlinski M, Charriere F, Lamont D, Scott M, Barton G, Lamond AI, (2012) A quantitative spatial proteomics analysis of proteome turnover in human cells. Mol Cell Proteomics 11: M111.011429
-
(2012)
Mol Cell Proteomics
, vol.11
, pp. M111011429
-
-
Boisvert, F.M.1
Ahmad, Y.2
Gierlinski, M.3
Charriere, F.4
Lamont, D.5
Scott, M.6
Barton, G.7
Lamond, A.I.8
-
6
-
-
0018786250
-
A comparison of the turnover of alpha-N-acetylated and nonacetylated mouse L-cell proteins
-
Brown JL, (1979) A comparison of the turnover of alpha-N-acetylated and nonacetylated mouse L-cell proteins. J Biol Chem 254: 1447-1449
-
(1979)
J Biol Chem
, vol.254
, pp. 1447-1449
-
-
Brown, J.L.1
-
7
-
-
0029558618
-
Alternative translation initiation site usage results in two functionally distinct forms of the GATA-1 transcription factor
-
Calligaris R, Bottardi S, Cogoi S, Apezteguia I, Santoro C, (1995) Alternative translation initiation site usage results in two functionally distinct forms of the GATA-1 transcription factor. Proc Natl Acad Sci USA 92: 11598-11602
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 11598-11602
-
-
Calligaris, R.1
Bottardi, S.2
Cogoi, S.3
Apezteguia, I.4
Santoro, C.5
-
8
-
-
82755184981
-
Systems-wide proteomic analysis in mammalian cells reveals conserved, functional protein turnover
-
Cambridge SB, Gnad F, Nguyen C, Bermejo JL, Kruger M, Mann M, (2011) Systems-wide proteomic analysis in mammalian cells reveals conserved, functional protein turnover. J Proteome Res 10: 5275-5284
-
(2011)
J Proteome Res
, vol.10
, pp. 5275-5284
-
-
Cambridge, S.B.1
Gnad, F.2
Nguyen, C.3
Bermejo, J.L.4
Kruger, M.5
Mann, M.6
-
9
-
-
84873508256
-
1D and 2D annotation enrichment: A statistical method integrating quantitative proteomics with complementary high-throughput data
-
Cox J, Mann M, (2012) 1D and 2D annotation enrichment: A statistical method integrating quantitative proteomics with complementary high-throughput data. BMC Bioinformatics 13 (Suppl. 16): S12
-
(2012)
BMC Bioinformatics
, vol.13
, Issue.SUPPL. 16
, pp. S12
-
-
Cox, J.1
Mann, M.2
-
10
-
-
84937605956
-
PROTEOFORMER: Deep proteome coverage through ribosome profiling and MS integration
-
Crappe J, Ndah E, Koch A, Steyaert S, Gawron D, De Keulenaer S, De Meester E, De Meyer T, Van Criekinge W, Van Damme P, Menschaert G, (2015) PROTEOFORMER: Deep proteome coverage through ribosome profiling and MS integration. Nucleic Acids Res 43: E29
-
(2015)
Nucleic Acids Res
, vol.43
, pp. e29
-
-
Crappe, J.1
Ndah, E.2
Koch, A.3
Steyaert, S.4
Gawron, D.5
De Keulenaer, S.6
De Meester, E.7
De Meyer, T.8
Van Criekinge, W.9
Van Damme, P.10
Menschaert, G.11
-
11
-
-
84882402269
-
Inhibition of protein synthesis alters protein degradation through activation of protein kinase B (AKT)
-
Dai CL, Shi J, Chen Y, Iqbal K, Liu F, Gong CX, (2013) Inhibition of protein synthesis alters protein degradation through activation of protein kinase B (AKT). J Biol Chem 288: 23875-23883
-
(2013)
J Biol Chem
, vol.288
, pp. 23875-23883
-
-
Dai, C.L.1
Shi, J.2
Chen, Y.3
Iqbal, K.4
Liu, F.5
Gong, C.X.6
-
12
-
-
79959837318
-
An evolutionary trade-off between protein turnover rate and protein aggregation favors a higher aggregation propensity in fast degrading proteins
-
De Baets G, Reumers J, Delgado Blanco J, Dopazo J, Schymkowitz J, Rousseau F, (2011) An evolutionary trade-off between protein turnover rate and protein aggregation favors a higher aggregation propensity in fast degrading proteins. PLoS Comput Biol 7: E1002090
-
(2011)
PLoS Comput Biol
, vol.7
, pp. e1002090
-
-
De Baets, G.1
Reumers, J.2
Delgado Blanco, J.3
Dopazo, J.4
Schymkowitz, J.5
Rousseau, F.6
-
13
-
-
84893667535
-
N-terminal acetylation stabilizes N-terminal helicity in lipid-and micelle-bound alpha-synuclein and increases its affinity for physiological membranes
-
Dikiy I, Eliezer D, (2014) N-terminal acetylation stabilizes N-terminal helicity in lipid-and micelle-bound alpha-synuclein and increases its affinity for physiological membranes. J Biol Chem 289: 3652-3665
-
(2014)
J Biol Chem
, vol.289
, pp. 3652-3665
-
-
Dikiy, I.1
Eliezer, D.2
-
14
-
-
60849097304
-
Turnover of the human proteome: Determination of protein intracellular stability by dynamic SILAC
-
Doherty MK, Hammond DE, Clague MJ, Gaskell SJ, Beynon RJ, (2009) Turnover of the human proteome: Determination of protein intracellular stability by dynamic SILAC. J Proteome Res 8: 104-112
-
(2009)
J Proteome Res
, vol.8
, pp. 104-112
-
-
Doherty, M.K.1
Hammond, D.E.2
Clague, M.J.3
Gaskell, S.J.4
Beynon, R.J.5
-
15
-
-
24044538903
-
IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
Dosztanyi Z, Csizmok V, Tompa P, Simon I, (2005a) IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 21: 3433-3434
-
(2005)
Bioinformatics
, vol.21
, pp. 3433-3434
-
-
Dosztanyi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
16
-
-
14844342815
-
The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins
-
Dosztanyi Z, Csizmok V, Tompa P, Simon I, (2005b) The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins. J Mol Biol 347: 827-839
-
(2005)
J Mol Biol
, vol.347
, pp. 827-839
-
-
Dosztanyi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
17
-
-
60849139395
-
GOrilla: A tool for discovery and visualization of enriched GO terms in ranked gene lists
-
Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z, (2009) GOrilla: A tool for discovery and visualization of enriched GO terms in ranked gene lists. BMC Bioinformatics 10: 48
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 48
-
-
Eden, E.1
Navon, R.2
Steinfeld, I.3
Lipson, D.4
Yakhini, Z.5
-
18
-
-
79951472959
-
Proteome half-life dynamics in living human cells
-
Eden E, Geva-Zatorsky N, Issaeva I, Cohen A, Dekel E, Danon T, Cohen L, Mayo A, Alon U, (2011) Proteome half-life dynamics in living human cells. Science 331: 764-768
-
(2011)
Science
, vol.331
, pp. 764-768
-
-
Eden, E.1
Geva-Zatorsky, N.2
Issaeva, I.3
Cohen, A.4
Dekel, E.5
Danon, T.6
Cohen, L.7
Mayo, A.8
Alon, U.9
-
19
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE, (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
20
-
-
57049182407
-
Degradation of misfolded protein in the cytoplasm is mediated by the ubiquitin ligase Ubr1
-
Eisele F, Wolf DH, (2008) Degradation of misfolded protein in the cytoplasm is mediated by the ubiquitin ligase Ubr1. FEBS Lett 582: 4143-4146
-
(2008)
FEBS Lett
, vol.582
, pp. 4143-4146
-
-
Eisele, F.1
Wolf, D.H.2
-
21
-
-
0034697980
-
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
-
Emanuelsson O, Nielsen H, Brunak S, von Heijne G, (2000) Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol 300: 1005-1016
-
(2000)
J Mol Biol
, vol.300
, pp. 1005-1016
-
-
Emanuelsson, O.1
Nielsen, H.2
Brunak, S.3
Von Heijne, G.4
-
22
-
-
84896723895
-
A novel pulse-chase SILAC strategy measures changes in protein decay and synthesis rates induced by perturbation of proteostasis with an Hsp90 inhibitor
-
Fierro-Monti I, Racle J, Hernandez C, Waridel P, Hatzimanikatis V, Quadroni M, (2013) A novel pulse-chase SILAC strategy measures changes in protein decay and synthesis rates induced by perturbation of proteostasis with an Hsp90 inhibitor. PLoS ONE 8: E80423
-
(2013)
PLoS ONE
, vol.8
, pp. e80423
-
-
Fierro-Monti, I.1
Racle, J.2
Hernandez, C.3
Waridel, P.4
Hatzimanikatis, V.5
Quadroni, M.6
-
23
-
-
84941086837
-
Proteome TopFIND 3.0 with TopFINDer and PathFINDer: Database and analysis tools for the association of protein termini to pre-and post-translational events
-
Fortelny N, Yang S, Pavlidis P, Lange PF, Overall CM, (2015) Proteome TopFIND 3.0 with TopFINDer and PathFINDer: Database and analysis tools for the association of protein termini to pre-and post-translational events. Nucleic Acids Res 43: D290-D297
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D290-D297
-
-
Fortelny, N.1
Yang, S.2
Pavlidis, P.3
Lange, P.F.4
Overall, C.M.5
-
24
-
-
33845993905
-
The proteomics of N-terminal methionine cleavage
-
Frottin F, Martinez A, Peynot P, Mitra S, Holz RC, Giglione C, Meinnel T, (2006) The proteomics of N-terminal methionine cleavage. Mol Cell Proteomics 5: 2336-2349
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 2336-2349
-
-
Frottin, F.1
Martinez, A.2
Peynot, P.3
Mitra, S.4
Holz, R.C.5
Giglione, C.6
Meinnel, T.7
-
25
-
-
84913538405
-
The proteome under translational control
-
Gawron D, Gevaert K, Van Damme P, (2014) The proteome under translational control. Proteomics 14: 2647-2662
-
(2014)
Proteomics
, vol.14
, pp. 2647-2662
-
-
Gawron, D.1
Gevaert, K.2
Van Damme, P.3
-
26
-
-
0038333588
-
Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides
-
Gevaert K, Goethals M, Martens L, Van Damme J, Staes A, Thomas GR, Vandekerckhove J, (2003) Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. Nat Biotechnol 21: 566-569
-
(2003)
Nat Biotechnol
, vol.21
, pp. 566-569
-
-
Gevaert, K.1
Goethals, M.2
Martens, L.3
Van Damme, J.4
Staes, A.5
Thomas, G.R.6
Vandekerckhove, J.7
-
27
-
-
77955644289
-
Mammalian microRNAs predominantly act to decrease target mRNA levels
-
Guo H, Ingolia NT, Weissman JS, Bartel DP, (2010) Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 466: 835-840
-
(2010)
Nature
, vol.466
, pp. 835-840
-
-
Guo, H.1
Ingolia, N.T.2
Weissman, J.S.3
Bartel, D.P.4
-
28
-
-
0344629427
-
Ubiquitin depletion as a key mediator of toxicity by translational inhibitors
-
Hanna J, Leggett DS, Finley D, (2003) Ubiquitin depletion as a key mediator of toxicity by translational inhibitors. Mol Cell Biol 23: 9251-9261
-
(2003)
Mol Cell Biol
, vol.23
, pp. 9251-9261
-
-
Hanna, J.1
Leggett, D.S.2
Finley, D.3
-
29
-
-
75749101057
-
Cytoplasmic protein quality control degradation mediated by parallel actions of the E3 ubiquitin ligases Ubr1 and San1
-
Heck JW, Cheung SK, Hampton RY, (2010) Cytoplasmic protein quality control degradation mediated by parallel actions of the E3 ubiquitin ligases Ubr1 and San1. Proc Natl Acad Sci USA 107: 1106-1111
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 1106-1111
-
-
Heck, J.W.1
Cheung, S.K.2
Hampton, R.Y.3
-
30
-
-
0021690975
-
Role of the alpha-amino group of protein in ubiquitin-mediated protein breakdown
-
Hershko A, Heller H, Eytan E, Kaklij G, Rose IA, (1984) Role of the alpha-amino group of protein in ubiquitin-mediated protein breakdown. Proc Natl Acad Sci USA 81: 7021-7025
-
(1984)
Proc Natl Acad Sci USA
, vol.81
, pp. 7021-7025
-
-
Hershko, A.1
Heller, H.2
Eytan, E.3
Kaklij, G.4
Rose, I.A.5
-
32
-
-
80052742721
-
Molecular mechanism of scanning and start codon selection in eukaryotes
-
first page of table of contents.
-
Hinnebusch AG, (2011) Molecular mechanism of scanning and start codon selection in eukaryotes. Microbiol Mol Biol Rev 75: 434-467 first page of table of contents.
-
(2011)
Microbiol Mol Biol Rev
, vol.75
, pp. 434-467
-
-
Hinnebusch, A.G.1
-
33
-
-
84904458790
-
Loss of amino-terminal acetylation suppresses a prion phenotype by modulating global protein folding
-
Holmes WM, Mannakee BK, Gutenkunst RN, Serio TR, (2014) Loss of amino-terminal acetylation suppresses a prion phenotype by modulating global protein folding. Nat Commun 5: 4383
-
(2014)
Nat Commun
, vol.5
, pp. 4383
-
-
Holmes, W.M.1
Mannakee, B.K.2
Gutenkunst, R.N.3
Serio, T.R.4
-
34
-
-
34547560275
-
WoLF PSORT: Protein localization predictor
-
Horton P, Park KJ, Obayashi T, Fujita N, Harada H, Adams-Collier CJ, Nakai K, (2007) WoLF PSORT: Protein localization predictor. Nucleic Acids Res 35: W585-W587
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W585-W587
-
-
Horton, P.1
Park, K.J.2
Obayashi, T.3
Fujita, N.4
Harada, H.5
Adams-Collier, C.J.6
Nakai, K.7
-
35
-
-
77149120798
-
N-terminal acetylation of cellular proteins creates specific degradation signals
-
Hwang CS, Shemorry A, Varshavsky A, (2010) N-terminal acetylation of cellular proteins creates specific degradation signals. Science 327: 973-977
-
(2010)
Science
, vol.327
, pp. 973-977
-
-
Hwang, C.S.1
Shemorry, A.2
Varshavsky, A.3
-
36
-
-
81055155799
-
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
-
Ingolia NT, Lareau LF, Weissman JS, (2011) Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 147: 789-802
-
(2011)
Cell
, vol.147
, pp. 789-802
-
-
Ingolia, N.T.1
Lareau, L.F.2
Weissman, J.S.3
-
37
-
-
24144485444
-
Iso-migrastatin congeners from Streptomyces platensis and generation of a glutarimide polyketide library featuring the dorrigocin, lactimidomycin, migrastatin, and NK30424 scaffolds
-
Ju J, Lim SK, Jiang H, Seo JW, Shen B, (2005) Iso-migrastatin congeners from Streptomyces platensis and generation of a glutarimide polyketide library featuring the dorrigocin, lactimidomycin, migrastatin, and NK30424 scaffolds. J Am Chem Soc 127: 11930-11931
-
(2005)
J Am Chem Soc
, vol.127
, pp. 11930-11931
-
-
Ju, J.1
Lim, S.K.2
Jiang, H.3
Seo, J.W.4
Shen, B.5
-
38
-
-
84866544803
-
Up-regulation of translation eukaryotic initiation factor 4E in nucleophosmin 1 haploinsufficient cells results in changes in CCAAT enhancer-binding protein alpha activity: Implications in myelodysplastic syndrome and acute myeloid leukemia
-
Khanna-Gupta A, Abayasekara N, Levine M, Sun H, Virgilio M, Nia N, Halene S, Sportoletti P, Jeong JY, Pandolfi PP, Berliner N, (2012) Up-regulation of translation eukaryotic initiation factor 4E in nucleophosmin 1 haploinsufficient cells results in changes in CCAAT enhancer-binding protein alpha activity: Implications in myelodysplastic syndrome and acute myeloid leukemia. J Biol Chem 287: 32728-32737
-
(2012)
J Biol Chem
, vol.287
, pp. 32728-32737
-
-
Khanna-Gupta, A.1
Abayasekara, N.2
Levine, M.3
Sun, H.4
Virgilio, M.5
Nia, N.6
Halene, S.7
Sportoletti, P.8
Jeong, J.Y.9
Pandolfi, P.P.10
Berliner, N.11
-
39
-
-
84892802083
-
The N-terminal methionine of cellular proteins as a degradation signal
-
Kim HK, Kim RR, Oh JH, Cho H, Varshavsky A, Hwang CS, (2014) The N-terminal methionine of cellular proteins as a degradation signal. Cell 156: 158-169
-
(2014)
Cell
, vol.156
, pp. 158-169
-
-
Kim, H.K.1
Kim, R.R.2
Oh, J.H.3
Cho, H.4
Varshavsky, A.5
Hwang, C.S.6
-
40
-
-
67650122080
-
Targeted mass spectrometric analysis of N-terminally truncated isoforms generated via alternative translation initiation
-
Kobayashi R, Patenia R, Ashizawa S, Vykoukal J, (2009) Targeted mass spectrometric analysis of N-terminally truncated isoforms generated via alternative translation initiation. FEBS Lett 583: 2441-2445
-
(2009)
FEBS Lett
, vol.583
, pp. 2441-2445
-
-
Kobayashi, R.1
Patenia, R.2
Ashizawa, S.3
Vykoukal, J.4
-
41
-
-
84914094148
-
A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites
-
Koch A, Gawron D, Steyaert S, Ndah E, Crappe J, De Keulenaer S, De Meester E, Ma M, Shen B, Gevaert K, Van Criekinge W, Van Damme P, Menschaert G, (2014) A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites. Proteomics 14: 2688-2698
-
(2014)
Proteomics
, vol.14
, pp. 2688-2698
-
-
Koch, A.1
Gawron, D.2
Steyaert, S.3
Ndah, E.4
Crappe, J.5
De Keulenaer, S.6
De Meester, E.7
Ma, M.8
Shen, B.9
Gevaert, K.10
Van Criekinge, W.11
Van Damme, P.12
Menschaert, G.13
-
42
-
-
0037121050
-
Pushing the limits of the scanning mechanism for initiation of translation
-
Kozak M, (2002) Pushing the limits of the scanning mechanism for initiation of translation. Gene 299: 1-34
-
(2002)
Gene
, vol.299
, pp. 1-34
-
-
Kozak, M.1
-
43
-
-
84890795845
-
Protein synthesis rate is the predominant regulator of protein expression during differentiation
-
Kristensen AR, Gsponer J, Foster LJ, (2013) Protein synthesis rate is the predominant regulator of protein expression during differentiation. Mol Syst Biol 9: 689
-
(2013)
Mol Syst Biol
, vol.9
, pp. 689
-
-
Kristensen, A.R.1
Gsponer, J.2
Foster, L.J.3
-
44
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte J, Doolittle RF, (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157: 105-132
-
(1982)
J Mol Biol
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
45
-
-
84866267681
-
Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution
-
Lee S, Liu B, Huang SX, Shen B, Qian SB, (2012) Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution. Proc Natl Acad Sci USA 109: E2424-E2432
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. E2424-E2432
-
-
Lee, S.1
Liu, B.2
Huang, S.X.3
Shen, B.4
Qian, S.B.5
-
46
-
-
9144260111
-
Alternative translation initiation generates a novel isoform of insulin-degrading enzyme targeted to mitochondria
-
Leissring MA, Farris W, Wu X, Christodoulou DC, Haigis MC, Guarente L, Selkoe DJ, (2004) Alternative translation initiation generates a novel isoform of insulin-degrading enzyme targeted to mitochondria. Biochem J 383: 439-446
-
(2004)
Biochem J
, vol.383
, pp. 439-446
-
-
Leissring, M.A.1
Farris, W.2
Wu, X.3
Christodoulou, D.C.4
Haigis, M.C.5
Guarente, L.6
Selkoe, D.J.7
-
47
-
-
84930958887
-
Stress-mediated translational control in cancer cells
-
Leprivier G, Rotblat B, Khan D, Jan E, Sorensen PH, (2014) Stress-mediated translational control in cancer cells. Biochim Biophys Acta 1849: 845-860
-
(2014)
Biochim Biophys Acta
, vol.1849
, pp. 845-860
-
-
Leprivier, G.1
Rotblat, B.2
Khan, D.3
Jan, E.4
Sorensen, P.H.5
-
48
-
-
84899550455
-
Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources
-
Li GW, Burkhardt D, Gross C, Weissman JS, (2014) Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources. Cell 157: 624-635
-
(2014)
Cell
, vol.157
, pp. 624-635
-
-
Li, G.W.1
Burkhardt, D.2
Gross, C.3
Weissman, J.S.4
-
49
-
-
23944526367
-
PRIDE: The proteomics identifications database
-
Martens L, Hermjakob H, Jones P, Adamski M, Taylor C, States D, Gevaert K, Vandekerckhove J, Apweiler R, (2005) PRIDE: The proteomics identifications database. Proteomics 5: 3537-3545
-
(2005)
Proteomics
, vol.5
, pp. 3537-3545
-
-
Martens, L.1
Hermjakob, H.2
Jones, P.3
Adamski, M.4
Taylor, C.5
States, D.6
Gevaert, K.7
Vandekerckhove, J.8
Apweiler, R.9
-
50
-
-
23044479363
-
Processed N-termini of mature proteins in higher eukaryotes and their major contribution to dynamic proteomics
-
Meinnel T, Peynot P, Giglione C, (2005) Processed N-termini of mature proteins in higher eukaryotes and their major contribution to dynamic proteomics. Biochimie 87: 701-712
-
(2005)
Biochimie
, vol.87
, pp. 701-712
-
-
Meinnel, T.1
Peynot, P.2
Giglione, C.3
-
51
-
-
84879936964
-
Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events
-
Menschaert G, Van Criekinge W, Notelaers T, Koch A, Crappe J, Gevaert K, Van Damme P, (2013) Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events. Mol Cell Proteomics 12: 1780-1790
-
(2013)
Mol Cell Proteomics
, vol.12
, pp. 1780-1790
-
-
Menschaert, G.1
Van Criekinge, W.2
Notelaers, T.3
Koch, A.4
Crappe, J.5
Gevaert, K.6
Van Damme, P.7
-
52
-
-
84923927316
-
Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning
-
Michel AM, Andreev DE, Baranov PV, (2014) Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning. BMC Bioinformatics 15: 380
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 380
-
-
Michel, A.M.1
Andreev, D.E.2
Baranov, P.V.3
-
53
-
-
84926486495
-
Biochemical and cellular analysis of Ogden syndrome reveals downstream Nt-acetylation defects
-
Myklebust LM, Van Damme P, Stove SI, Dorfel MJ, Abboud A, Kalvik TV, Grauffel C, Jonckheere V, Wu Y, Swensen J, Kaasa H, Liszczak G, Marmorstein R, Reuter N, Lyon GJ, Gevaert K, Arnesen T, (2015) Biochemical and cellular analysis of Ogden syndrome reveals downstream Nt-acetylation defects. Hum Mol Genet 24: 1956-1976
-
(2015)
Hum Mol Genet
, vol.24
, pp. 1956-1976
-
-
Myklebust, L.M.1
Van Damme, P.2
Stove, S.I.3
Dorfel, M.J.4
Abboud, A.5
Kalvik, T.V.6
Grauffel, C.7
Jonckheere, V.8
Wu, Y.9
Swensen, J.10
Kaasa, H.11
Liszczak, G.12
Marmorstein, R.13
Reuter, N.14
Lyon, G.J.15
Gevaert, K.16
Arnesen, T.17
-
54
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, Pandey A, Mann M, (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1: 376-386
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
55
-
-
34247642450
-
Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors
-
Paoletti AC, Parmely TJ, Tomomori-Sato C, Sato S, Zhu D, Conaway RC, Conaway JW, Florens L, Washburn MP, (2006) Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors. Proc Natl Acad Sci USA 103: 18928-18933
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 18928-18933
-
-
Paoletti, A.C.1
Parmely, T.J.2
Tomomori-Sato, C.3
Sato, S.4
Zhu, D.5
Conaway, R.C.6
Conaway, J.W.7
Florens, L.8
Washburn, M.P.9
-
56
-
-
84924769665
-
Control of mammalian G protein signaling by N-terminal acetylation and the N-end rule pathway
-
Park SE, Kim JM, Seok OH, Cho H, Wadas B, Kim SY, Varshavsky A, Hwang CS, (2015) Control of mammalian G protein signaling by N-terminal acetylation and the N-end rule pathway. Science 347: 1249-1252
-
(2015)
Science
, vol.347
, pp. 1249-1252
-
-
Park, S.E.1
Kim, J.M.2
Seok, O.H.3
Cho, H.4
Wadas, B.5
Kim, S.Y.6
Varshavsky, A.7
Hwang, C.S.8
-
57
-
-
84863571174
-
The N-end rule pathway counteracts cell death by destroying proapoptotic protein fragments
-
Piatkov KI, Brower CS, Varshavsky A, (2012) The N-end rule pathway counteracts cell death by destroying proapoptotic protein fragments. Proc Natl Acad Sci USA 109: E1839-E1847
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. E1839-E1847
-
-
Piatkov, K.I.1
Brower, C.S.2
Varshavsky, A.3
-
58
-
-
38549163153
-
CORUM: The comprehensive resource of mammalian protein complexes
-
Ruepp A, Brauner B, Dunger-Kaltenbach I, Frishman G, Montrone C, Stransky M, Waegele B, Schmidt T, Doudieu ON, Stumpflen V, Mewes HW, (2008) CORUM: The comprehensive resource of mammalian protein complexes. Nucleic Acids Res 36: D646-D650
-
(2008)
Nucleic Acids Res
, vol.36
, pp. D646-D650
-
-
Ruepp, A.1
Brauner, B.2
Dunger-Kaltenbach, I.3
Frishman, G.4
Montrone, C.5
Stransky, M.6
Waegele, B.7
Schmidt, T.8
Doudieu, O.N.9
Stumpflen, V.10
Mewes, H.W.11
-
59
-
-
75549091794
-
CORUM: The comprehensive resource of mammalian protein complexes-2009
-
Ruepp A, Waegele B, Lechner M, Brauner B, Dunger-Kaltenbach I, Fobo G, Frishman G, Montrone C, Mewes HW, (2010) CORUM: The comprehensive resource of mammalian protein complexes-2009. Nucleic Acids Res 38: D497-D501
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D497-D501
-
-
Ruepp, A.1
Waegele, B.2
Lechner, M.3
Brauner, B.4
Dunger-Kaltenbach, I.5
Fobo, G.6
Frishman, G.7
Montrone, C.8
Mewes, H.W.9
-
60
-
-
77249087063
-
Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin
-
Schneider-Poetsch T, Ju J, Eyler DE, Dang Y, Bhat S, Merrick WC, Green R, Shen B, Liu JO, (2010) Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin. Nat Chem Biol 6: 209-217
-
(2010)
Nat Chem Biol
, vol.6
, pp. 209-217
-
-
Schneider-Poetsch, T.1
Ju, J.2
Eyler, D.E.3
Dang, Y.4
Bhat, S.5
Merrick, W.C.6
Green, R.7
Shen, B.8
Liu, J.O.9
-
61
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhausser B, Busse D, Li N, Dittmar G, Schuchhardt J, Wolf J, Chen W, Selbach M, (2011) Global quantification of mammalian gene expression control. Nature 473: 337-342
-
(2011)
Nature
, vol.473
, pp. 337-342
-
-
Schwanhausser, B.1
Busse, D.2
Li, N.3
Dittmar, G.4
Schuchhardt, J.5
Wolf, J.6
Chen, W.7
Selbach, M.8
-
62
-
-
80555131132
-
N-terminal acetylation acts as an avidity enhancer within an interconnected multiprotein complex
-
Scott DC, Monda JK, Bennett EJ, Harper JW, Schulman BA, (2011) N-terminal acetylation acts as an avidity enhancer within an interconnected multiprotein complex. Science 334: 674-678
-
(2011)
Science
, vol.334
, pp. 674-678
-
-
Scott, D.C.1
Monda, J.K.2
Bennett, E.J.3
Harper, J.W.4
Schulman, B.A.5
-
63
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
Selbach M, Schwanhausser B, Thierfelder N, Fang Z, Khanin R, Rajewsky N, (2008) Widespread changes in protein synthesis induced by microRNAs. Nature 455: 58-63
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhausser, B.2
Thierfelder, N.3
Fang, Z.4
Khanin, R.5
Rajewsky, N.6
-
64
-
-
84878195272
-
Control of protein quality and stoichiometries by N-terminal acetylation and the N-end rule pathway
-
Shemorry A, Hwang CS, Varshavsky A, (2013) Control of protein quality and stoichiometries by N-terminal acetylation and the N-end rule pathway. Mol Cell 50: 540-551
-
(2013)
Mol Cell
, vol.50
, pp. 540-551
-
-
Shemorry, A.1
Hwang, C.S.2
Varshavsky, A.3
-
65
-
-
34249751177
-
Acetylation regulates tropomyosin function in the fission yeast Schizosaccharomyces pombe
-
Skoumpla K, Coulton AT, Lehman W, Geeves MA, Mulvihill DP, (2007) Acetylation regulates tropomyosin function in the fission yeast Schizosaccharomyces pombe. J Cell Sci 120: 1635-1645
-
(2007)
J Cell Sci
, vol.120
, pp. 1635-1645
-
-
Skoumpla, K.1
Coulton, A.T.2
Lehman, W.3
Geeves, M.A.4
Mulvihill, D.P.5
-
66
-
-
84874625369
-
Proteoform: A single term describing protein complexity
-
Consortium for Top Down P.
-
Smith LM, Kelleher NL, Consortium for Top Down P (2013) Proteoform: A single term describing protein complexity. Nat Methods 10: 186-187.
-
(2013)
Nat Methods
, vol.10
, pp. 186-187
-
-
Smith, L.M.1
Kelleher, N.L.2
-
67
-
-
60149091189
-
Regulation of translation initiation in eukaryotes: Mechanisms and biological targets
-
Sonenberg N, Hinnebusch AG, (2009) Regulation of translation initiation in eukaryotes: Mechanisms and biological targets. Cell 136: 731-745
-
(2009)
Cell
, vol.136
, pp. 731-745
-
-
Sonenberg, N.1
Hinnebusch, A.G.2
-
68
-
-
68949202210
-
Differential use of an in-frame translation initiation codon regulates human mu opioid receptor (OPRM1)
-
Song KY, Choi HS, Hwang CK, Kim CS, Law PY, Wei LN, Loh HH, (2009) Differential use of an in-frame translation initiation codon regulates human mu opioid receptor (OPRM1). Cell Mol Life Sci 66: 2933-2942
-
(2009)
Cell Mol Life Sci
, vol.66
, pp. 2933-2942
-
-
Song, K.Y.1
Choi, H.S.2
Hwang, C.K.3
Kim, C.S.4
Law, P.Y.5
Wei, L.N.6
Loh, H.H.7
-
69
-
-
80053604348
-
Selecting protein N-terminal peptides by combined fractional diagonal chromatography
-
Staes A, Impens F, Van Damme P, Ruttens B, Goethals M, Demol H, Timmerman E, Vandekerckhove J, Gevaert K, (2011) Selecting protein N-terminal peptides by combined fractional diagonal chromatography. Nat Protoc 6: 1130-1141
-
(2011)
Nat Protoc
, vol.6
, pp. 1130-1141
-
-
Staes, A.1
Impens, F.2
Van Damme, P.3
Ruttens, B.4
Goethals, M.5
Demol, H.6
Timmerman, E.7
Vandekerckhove, J.8
Gevaert, K.9
-
70
-
-
84859490749
-
Protein N-terminal acetyltransferases: When the start matters
-
Starheim KK, Gevaert K, Arnesen T, (2012) Protein N-terminal acetyltransferases: When the start matters. Trends Biochem Sci 37: 152-161
-
(2012)
Trends Biochem Sci
, vol.37
, pp. 152-161
-
-
Starheim, K.K.1
Gevaert, K.2
Arnesen, T.3
-
71
-
-
84902097200
-
A COFRADIC protocol to study protein ubiquitination
-
Stes E, Laga M, Walton A, Samyn N, Timmerman E, De Smet I, Goormachtig S, Gevaert K, (2014) A COFRADIC protocol to study protein ubiquitination. J Proteome Res 13: 3107-3113
-
(2014)
J Proteome Res
, vol.13
, pp. 3107-3113
-
-
Stes, E.1
Laga, M.2
Walton, A.3
Samyn, N.4
Timmerman, E.5
De Smet, I.6
Goormachtig, S.7
Gevaert, K.8
-
72
-
-
79960610118
-
REVIGO summarizes and visualizes long lists of gene ontology terms
-
Supek F, Bosnjak M, Skunca N, Smuc T, (2011) REVIGO summarizes and visualizes long lists of gene ontology terms. PLoS ONE 6: E21800
-
(2011)
PLoS ONE
, vol.6
, pp. e21800
-
-
Supek, F.1
Bosnjak, M.2
Skunca, N.3
Smuc, T.4
-
73
-
-
45249096678
-
Alternative translation initiation in rat brain yields K2P2.1 potassium channels permeable to sodium
-
Thomas D, Plant LD, Wilkens CM, McCrossan ZA, Goldstein SA, (2008) Alternative translation initiation in rat brain yields K2P2.1 potassium channels permeable to sodium. Neuron 58: 859-870
-
(2008)
Neuron
, vol.58
, pp. 859-870
-
-
Thomas, D.1
Plant, L.D.2
Wilkens, C.M.3
McCrossan, Z.A.4
Goldstein, S.A.5
-
74
-
-
0037781523
-
Generation of protein isoform diversity by alternative initiation of translation at non-AUG codons
-
Touriol C, Bornes S, Bonnal S, Audigier S, Prats H, Prats AC, Vagner S, (2003) Generation of protein isoform diversity by alternative initiation of translation at non-AUG codons. Biol Cell 95: 169-178
-
(2003)
Biol Cell
, vol.95
, pp. 169-178
-
-
Touriol, C.1
Bornes, S.2
Bonnal, S.3
Audigier, S.4
Prats, H.5
Prats, A.C.6
Vagner, S.7
-
75
-
-
84899753187
-
N-terminal proteomics and ribosome profiling provide a comprehensive view of the alternative translation initiation landscape in mice and men
-
Van Damme P, Gawron D, Van Criekinge W, Menschaert G, (2014) N-terminal proteomics and ribosome profiling provide a comprehensive view of the alternative translation initiation landscape in mice and men. Mol Cell Proteomics 13: 1245-1261
-
(2014)
Mol Cell Proteomics
, vol.13
, pp. 1245-1261
-
-
Van Damme, P.1
Gawron, D.2
Van Criekinge, W.3
Menschaert, G.4
-
76
-
-
79960946480
-
NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation
-
Van Damme P, Hole K, Pimenta-Marques A, Helsens K, Vandekerckhove J, Martinho RG, Gevaert K, Arnesen T, (2011) NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation. PLoS Genet 7: E1002169
-
(2011)
PLoS Genet
, vol.7
, pp. e1002169
-
-
Van Damme, P.1
Hole, K.2
Pimenta-Marques, A.3
Helsens, K.4
Vandekerckhove, J.5
Martinho, R.G.6
Gevaert, K.7
Arnesen, T.8
-
77
-
-
84864512849
-
N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB
-
Van Damme P, Lasa M, Polevoda B, Gazquez C, Elosegui-Artola A, Kim DS, De Juan-Pardo E, Demeyer K, Hole K, Larrea E, Timmerman E, Prieto J, Arnesen T, Sherman F, Gevaert K, Aldabe R, (2012) N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB. Proc Natl Acad Sci USA 109: 12449-12454
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 12449-12454
-
-
Van Damme, P.1
Lasa, M.2
Polevoda, B.3
Gazquez, C.4
Elosegui-Artola, A.5
Kim, D.S.6
De Juan-Pardo, E.7
Demeyer, K.8
Hole, K.9
Larrea, E.10
Timmerman, E.11
Prieto, J.12
Arnesen, T.13
Sherman, F.14
Gevaert, K.15
Aldabe, R.16
-
78
-
-
77957849836
-
A review of COFRADIC techniques targeting protein N-terminal acetylation
-
Van Damme P, Van Damme J, Demol H, Staes A, Vandekerckhove J, Gevaert K, (2009) A review of COFRADIC techniques targeting protein N-terminal acetylation. BMC Proc 3 (Suppl. 6): S6
-
(2009)
BMC Proc
, vol.3
, Issue.SUPPL. 6
, pp. S6
-
-
Van Damme, P.1
Van Damme, J.2
Demol, H.3
Staes, A.4
Vandekerckhove, J.5
Gevaert, K.6
-
79
-
-
84930693371
-
Two N-terminal acetyltransferases antagonistically regulate the stability of a nod-like receptor in Arabidopsis
-
Xu F, Huang Y, Li L, Gannon P, Linster E, Huber M, Kapos P, Bienvenut W, Polevoda B, Meinnel T, Hell R, Giglione C, Zhang Y, Wirtz M, Chen S, Li X, (2015) Two N-terminal acetyltransferases antagonistically regulate the stability of a nod-like receptor in Arabidopsis. Plant Cell 27: 1547-1562
-
(2015)
Plant Cell
, vol.27
, pp. 1547-1562
-
-
Xu, F.1
Huang, Y.2
Li, L.3
Gannon, P.4
Linster, E.5
Huber, M.6
Kapos, P.7
Bienvenut, W.8
Polevoda, B.9
Meinnel, T.10
Hell, R.11
Giglione, C.12
Zhang, Y.13
Wirtz, M.14
Chen, S.15
Li, X.16
-
80
-
-
84879490227
-
RAPID: Fast and accurate sequence-based prediction of intrinsic disorder content on proteomic scale
-
Yan J, Mizianty MJ, Filipow PL, Uversky VN, Kurgan L, (2013) RAPID: Fast and accurate sequence-based prediction of intrinsic disorder content on proteomic scale. Biochim Biophys Acta 1834: 1671-1680
-
(2013)
Biochim Biophys Acta
, vol.1834
, pp. 1671-1680
-
-
Yan, J.1
Mizianty, M.J.2
Filipow, P.L.3
Uversky, V.N.4
Kurgan, L.5
-
81
-
-
55849136903
-
Global protein stability profiling in mammalian cells
-
Yen HC, Xu Q, Chou DM, Zhao Z, Elledge SJ, (2008) Global protein stability profiling in mammalian cells. Science 322: 918-923
-
(2008)
Science
, vol.322
, pp. 918-923
-
-
Yen, H.C.1
Xu, Q.2
Chou, D.M.3
Zhao, Z.4
Elledge, S.J.5
|