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Volumn 24, Issue 3, 2016, Pages 375-382

The Role of the Membrane in the Structure and Biophysical Robustness of the Dengue Virion Envelope

Author keywords

dengue virus; diffusion; lipid bilayer; structure and dynamics; viral envelope

Indexed keywords

ARTICLE; BIOPHYSICS; DENGUE VIRUS 2; DIFFUSION COEFFICIENT; LIPID BILAYER; MEMBRANE STRUCTURE; MOLECULAR DYNAMICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN LIPID INTERACTION; STATIC ELECTRICITY; SURFACE AREA; VIRION; VIRUS ENVELOPE; CELL MEMBRANE; CHEMICAL DATABASE; CHEMISTRY; CRYOELECTRON MICROSCOPY; DENGUE VIRUS; METABOLISM; MOLECULAR MODEL; ULTRASTRUCTURE;

EID: 84959337424     PISSN: 09692126     EISSN: 18784186     Source Type: Journal    
DOI: 10.1016/j.str.2015.12.011     Document Type: Article
Times cited : (74)

References (57)
  • 1
    • 78349258978 scopus 로고    scopus 로고
    • Multiscale computer simulation of the immature HIV-1 virion
    • G.S. Ayton, and G.A. Voth Multiscale computer simulation of the immature HIV-1 virion Biophys. J. 99 2010 2757 2765
    • (2010) Biophys. J. , vol.99 , pp. 2757-2765
    • Ayton, G.S.1    Voth, G.A.2
  • 4
    • 84907221090 scopus 로고    scopus 로고
    • Determining structural and mechanical properties from molecular dynamics simulations of lipid vesicles
    • A.R. Braun, and J.N. Sachs Determining structural and mechanical properties from molecular dynamics simulations of lipid vesicles J. Chem. Theory Comput. 10 2014 4160 4168
    • (2014) J. Chem. Theory Comput. , vol.10 , pp. 4160-4168
    • Braun, A.R.1    Sachs, J.N.2
  • 8
    • 77957957039 scopus 로고    scopus 로고
    • Organelle-like membrane compartmentalization of positive-strand RNA virus replication factories
    • J.A. den Boon, and P. Ahlquist Organelle-like membrane compartmentalization of positive-strand RNA virus replication factories Annu. Rev. Microbiol. 64 2010 241 256
    • (2010) Annu. Rev. Microbiol. , vol.64 , pp. 241-256
    • Den Boon, J.A.1    Ahlquist, P.2
  • 9
    • 42949117368 scopus 로고    scopus 로고
    • Protein area occupancy at the center of the red blood cell membrane
    • A.D. Dupuy, and D.M. Engelman Protein area occupancy at the center of the red blood cell membrane Proc. Natl. Acad. Sci. USA 105 2008 2848 2852
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 2848-2852
    • Dupuy, A.D.1    Engelman, D.M.2
  • 10
    • 84905484603 scopus 로고    scopus 로고
    • Lipidwrapper: an algorithm for generating large-scale membrane models of arbitrary geometry
    • J.D. Durrant, and R.E. Amaro Lipidwrapper: an algorithm for generating large-scale membrane models of arbitrary geometry PLoS Comp. Biol. 10 2014 e1003720
    • (2014) PLoS Comp. Biol. , vol.10
    • Durrant, J.D.1    Amaro, R.E.2
  • 12
  • 14
    • 84938740418 scopus 로고    scopus 로고
    • Atomic modeling of an immature retroviral lattice using molecular dynamics and mutagenesis
    • B.C. Goh, J.R. Perilla, M.R. England, K.J. Heyrana, R.C. Craven, and K. Schulten Atomic modeling of an immature retroviral lattice using molecular dynamics and mutagenesis Structure 23 2015 1414 1425
    • (2015) Structure , vol.23 , pp. 1414-1425
    • Goh, B.C.1    Perilla, J.R.2    England, M.R.3    Heyrana, K.J.4    Craven, R.C.5    Schulten, K.6
  • 15
    • 0036468861 scopus 로고    scopus 로고
    • Epidemic dengue/dengue hemorrhagic fever as a public health, social and economic problem in the 21st century
    • D.J. Gubler Epidemic dengue/dengue hemorrhagic fever as a public health, social and economic problem in the 21st century Trends Microbiol. 10 2002 100 103
    • (2002) Trends Microbiol. , vol.10 , pp. 100-103
    • Gubler, D.J.1
  • 16
    • 84937761010 scopus 로고    scopus 로고
    • Viral membrane fusion
    • S.C. Harrison Viral membrane fusion Virology 479 2015 498 507
    • (2015) Virology , vol.479 , pp. 498-507
    • Harrison, S.C.1
  • 17
    • 79959882330 scopus 로고    scopus 로고
    • Multifaceted roles for lipids in viral infection
    • N.S. Heaton, and G. Randall Multifaceted roles for lipids in viral infection Trends Microbiol. 19 2011 368 375
    • (2011) Trends Microbiol. , vol.19 , pp. 368-375
    • Heaton, N.S.1    Randall, G.2
  • 19
    • 46249092554 scopus 로고    scopus 로고
    • GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation
    • B. Hess, C. Kutzner, D. van der Spoel, and E. Lindahl GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation J. Chem. Theory Comput. 4 2008 435 447
    • (2008) J. Chem. Theory Comput. , vol.4 , pp. 435-447
    • Hess, B.1    Kutzner, C.2    Van Der Spoel, D.3    Lindahl, E.4
  • 21
    • 34247493236 scopus 로고    scopus 로고
    • Matplotlib: a 2D graphics environment
    • J.D. Hunter Matplotlib: a 2D graphics environment Comput. Sci. Eng. 9 2007 90 95
    • (2007) Comput. Sci. Eng. , vol.9 , pp. 90-95
    • Hunter, J.D.1
  • 23
    • 84969222282 scopus 로고    scopus 로고
    • Lipid composition of the viral envelope of three strains of influenza virus: not all viruses are created equal
    • P.T. Ivanova, D.S. Myers, S.B. Milne, J.L. McClaren, P.G. Thomas, and H.A. Brown Lipid composition of the viral envelope of three strains of influenza virus: not all viruses are created equal ACS Infect Dis. 1 2015 399 452
    • (2015) ACS Infect Dis. , vol.1 , pp. 399-452
    • Ivanova, P.T.1    Myers, D.S.2    Milne, S.B.3    McClaren, J.L.4    Thomas, P.G.5    Brown, H.A.6
  • 24
    • 84931282078 scopus 로고    scopus 로고
    • Alchembed: a computational method for incorporating multiple proteins into complex lipid geometries
    • E. Jefferys, Z.A. Sands, J. Shi, M.S. Sansom, and P.W. Fowler Alchembed: a computational method for incorporating multiple proteins into complex lipid geometries J. Chem. Theory Comput. 11 2015 2743 2754
    • (2015) J. Chem. Theory Comput. , vol.11 , pp. 2743-2754
    • Jefferys, E.1    Sands, Z.A.2    Shi, J.3    Sansom, M.S.4    Fowler, P.W.5
  • 25
    • 80055020948 scopus 로고    scopus 로고
    • Consistent picture of lateral subdiffusion in lipid bilayers: molecular dynamics simulation and exact results
    • 3651800
    • G.R. Kneller, K. Baczynski, and M. Pasenkiewicz-Gierula Consistent picture of lateral subdiffusion in lipid bilayers: molecular dynamics simulation and exact results J. Chem. Phys. 135 2011 3651800
    • (2011) J. Chem. Phys. , vol.135
    • Kneller, G.R.1    Baczynski, K.2    Pasenkiewicz-Gierula, M.3
  • 27
    • 84908326414 scopus 로고    scopus 로고
    • Lipid clustering correlates with membrane curvature as revealed by molecular simulations of complex lipid bilayers
    • H. Koldsø, D. Shorthouse, J. Hélie, and M.S.P. Sansom Lipid clustering correlates with membrane curvature as revealed by molecular simulations of complex lipid bilayers PLoS Comp. Biol. 10 2014 e1003911
    • (2014) PLoS Comp. Biol. , vol.10
    • Koldsø, H.1    Shorthouse, D.2    Hélie, J.3    Sansom, M.S.P.4
  • 29
    • 27944481316 scopus 로고    scopus 로고
    • Membrane proteins modulate the bilayer curvature in the bacterial virus Bam35
    • P.A. Laurinmaki, J.T. Huiskonen, D.H. Bamford, and S.J. Butcher Membrane proteins modulate the bilayer curvature in the bacterial virus Bam35 Structure 13 2005 1819 1828
    • (2005) Structure , vol.13 , pp. 1819-1828
    • Laurinmaki, P.A.1    Huiskonen, J.T.2    Bamford, D.H.3    Butcher, S.J.4
  • 31
    • 84941662578 scopus 로고    scopus 로고
    • Characterization of N-glycan structures on the surface of mature dengue 2 virus derived from insect cells
    • Y. Lei, H. Yu, Y. Dong, J. Yang, W. Ye, Y. Wang, W. Chen, Z. Jia, Z. Xu, Z. Li, and F. Zhang Characterization of N-glycan structures on the surface of mature dengue 2 virus derived from insect cells PLoS One 10 2015 e0132122
    • (2015) PLoS One , vol.10
    • Lei, Y.1    Yu, H.2    Dong, Y.3    Yang, J.4    Ye, W.5    Wang, Y.6    Chen, W.7    Jia, Z.8    Xu, Z.9    Li, Z.10    Zhang, F.11
  • 33
    • 84882398607 scopus 로고    scopus 로고
    • Perspective on the Martini model
    • S.J. Marrink, and D.P. Tieleman Perspective on the Martini model Chem. Soc. Rev. 42 2013 6801 6822
    • (2013) Chem. Soc. Rev. , vol.42 , pp. 6801-6822
    • Marrink, S.J.1    Tieleman, D.P.2
  • 35
    • 84892833416 scopus 로고    scopus 로고
    • Data structures for statistical computing in python
    • S. van der Walt, J. Millman
    • W. McKinney Data structures for statistical computing in python S. van der Walt, J. Millman, Proceedings of the 9th Python in Science Conference 2010 51 56
    • (2010) Proceedings of the 9th Python in Science Conference , pp. 51-56
    • McKinney, W.1
  • 36
    • 79958185452 scopus 로고    scopus 로고
    • MDAnalysis: a toolkit for the analysis of molecular dynamics simulations
    • N. Michaud-Agrawal, E.J. Denning, T.B. Woolf, and O. Beckstein MDAnalysis: a toolkit for the analysis of molecular dynamics simulations J. Comput. Chem. 32 2011 2319 2327
    • (2011) J. Comput. Chem. , vol.32 , pp. 2319-2327
    • Michaud-Agrawal, N.1    Denning, E.J.2    Woolf, T.B.3    Beckstein, O.4
  • 38
    • 38049156543 scopus 로고    scopus 로고
    • Dengue and hemorrhagic fever - a potential threat to public health in the United States
    • D.M. Morens, and A.S. Fauci Dengue and hemorrhagic fever - a potential threat to public health in the United States JAMA 299 2008 214 216
    • (2008) JAMA , vol.299 , pp. 214-216
    • Morens, D.M.1    Fauci, A.S.2
  • 39
    • 34247500374 scopus 로고    scopus 로고
    • Python for scientific computing
    • T.E. Oliphant Python for scientific computing Comput. Sci. Eng. 9 2007 10 20
    • (2007) Comput. Sci. Eng. , vol.9 , pp. 10-20
    • Oliphant, T.E.1
  • 41
    • 34247481878 scopus 로고    scopus 로고
    • IPython: a system for interactive scientific computing
    • F. Perez, and B.E. Granger IPython: a system for interactive scientific computing Comput. Sci. Eng. 9 2007 21 29
    • (2007) Comput. Sci. Eng. , vol.9 , pp. 21-29
    • Perez, F.1    Granger, B.E.2
  • 42
    • 40949088194 scopus 로고    scopus 로고
    • Progressive ordering with decreasing temperature of the phospholipids of influenza virus
    • I.V. Polozov, L. Bezrukov, K. Gawrisch, and J. Zimmerberg Progressive ordering with decreasing temperature of the phospholipids of influenza virus Nat. Chem. Biol. 4 2008 248 255
    • (2008) Nat. Chem. Biol. , vol.4 , pp. 248-255
    • Polozov, I.V.1    Bezrukov, L.2    Gawrisch, K.3    Zimmerberg, J.4
  • 43
    • 84864751064 scopus 로고    scopus 로고
    • Multifaceted substrate capture scheme of a rhomboid protease
    • T. Reddy, and J.K. Rainey Multifaceted substrate capture scheme of a rhomboid protease J. Phys. Chem. B 116 2012 8942 8954
    • (2012) J. Phys. Chem. B , vol.116 , pp. 8942-8954
    • Reddy, T.1    Rainey, J.K.2
  • 45
    • 84963951660 scopus 로고    scopus 로고
    • Molecular basis of endosomal-membrane association for the dengue virus envelope protein
    • D.M. Rogers, M.S. Kent, and S.B. Rempe Molecular basis of endosomal-membrane association for the dengue virus envelope protein Biochim. Biophys. Acta 1848 2015 1041 1052
    • (2015) Biochim. Biophys. Acta , vol.1848 , pp. 1041-1052
    • Rogers, D.M.1    Kent, M.S.2    Rempe, S.B.3
  • 46
    • 84947201450 scopus 로고    scopus 로고
    • Simulations show that virus assembly and budding are facilitated by membrane microdomains
    • T. Ruiz-Herrero, and M.F. Hagan Simulations show that virus assembly and budding are facilitated by membrane microdomains Biophys. J. 108 2015 585 595
    • (2015) Biophys. J. , vol.108 , pp. 585-595
    • Ruiz-Herrero, T.1    Hagan, M.F.2
  • 48
    • 79952595565 scopus 로고    scopus 로고
    • The NumPy array: a structure for efficient numerical computation
    • S. van der Walt, S.C. Colbert, and G. Varoquaux The NumPy array: a structure for efficient numerical computation Comput. Sci. Eng. 13 2011 22 30
    • (2011) Comput. Sci. Eng. , vol.13 , pp. 22-30
    • Van Der Walt, S.1    Colbert, S.C.2    Varoquaux, G.3
  • 49
    • 84855969095 scopus 로고    scopus 로고
    • Association of influenza virus proteins with membrane rafts
    • M. Veit, and B. Thaa Association of influenza virus proteins with membrane rafts Adv. Virol. 2011 2011 370606
    • (2011) Adv. Virol. , vol.2011 , pp. 370606
    • Veit, M.1    Thaa, B.2
  • 50
    • 0000931789 scopus 로고
    • Volume, shape, and roundness of quartz particles
    • H. Wadell Volume, shape, and roundness of quartz particles J. Geol. 43 1935 250 280
    • (1935) J. Geol. , vol.43 , pp. 250-280
    • Wadell, H.1
  • 52
    • 84870299253 scopus 로고    scopus 로고
    • Distribution of surface glycoproteins on influenza A virus determined by electron cryotomography
    • S. Wasilewski, L.J. Calder, T. Grant, and P.B. Rosenthal Distribution of surface glycoproteins on influenza A virus determined by electron cryotomography Vaccine 30 2012 7368 7373
    • (2012) Vaccine , vol.30 , pp. 7368-7373
    • Wasilewski, S.1    Calder, L.J.2    Grant, T.3    Rosenthal, P.B.4
  • 53
    • 77954256616 scopus 로고    scopus 로고
    • G-membed: efficient insertion of a membrane protein into an equilibrated lipid bilayer with minimal perturbation
    • M.G. Wolf, M. Hoefling, C. Aponte-Santamaría, H. Grubmüller, and G. Groenhof g-membed: efficient insertion of a membrane protein into an equilibrated lipid bilayer with minimal perturbation J. Comput. Chem. 31 2010 2169 2174
    • (2010) J. Comput. Chem. , vol.31 , pp. 2169-2174
    • Wolf, M.G.1    Hoefling, M.2    Aponte-Santamaría, C.3    Grubmüller, H.4    Groenhof, G.5


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