-
1
-
-
35148838537
-
-
Yildirim, M. A.; Goh, K.-I.; Cusick, M. E.; Barabási, A.-L.; Vidal, M. Nat. Biotechnol. 2007, 25, 1119-26
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 1119-26
-
-
Yildirim, M.A.1
Goh, K.-I.2
Cusick, M.E.3
Barabási, A.-L.4
Vidal, M.5
-
4
-
-
23044476985
-
-
Gumbart, J.; Wang, Y.; Aksimentiev, A.; Tajkhorshid, E.; Schulten, K. Curr. Opin. Struct. Biol. 2005, 15, 423-31
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 423-31
-
-
Gumbart, J.1
Wang, Y.2
Aksimentiev, A.3
Tajkhorshid, E.4
Schulten, K.5
-
8
-
-
80052494607
-
-
Parton, D. L.; Klingelhoefer, J. W.; Sansom, M. S. P. Biophys. J. 2011, 101, 691-9
-
(2011)
Biophys. J.
, vol.101
, pp. 691-9
-
-
Parton, D.L.1
Klingelhoefer, J.W.2
Sansom, M.S.P.3
-
9
-
-
84857648415
-
-
Domanski, J.; Marrink, S. J.; Schåfer, L. V. Biochem Biophys Acta 2012, 1818, 984-94
-
(2012)
Biochem Biophys Acta
, vol.1818
, pp. 984-94
-
-
Domanski, J.1
Marrink, S.J.2
Schåfer, L.V.3
-
10
-
-
84859911637
-
-
Baoukina, S.; Marrink, S.; Tieleman, D. P. Biophys. J. 2012, 102, 1866-71
-
(2012)
Biophys. J.
, vol.102
, pp. 1866-71
-
-
Baoukina, S.1
Marrink, S.2
Tieleman, D.P.3
-
12
-
-
84908093537
-
-
Chavent, M.; Reddy, T.; Goose, J.; Dahl, A. C. E.; Stone, J. E.; Jobard, B.; Sansom, M. S. P. Faraday Discuss 2014, 169, 455-75
-
(2014)
Faraday Discuss
, vol.169
, pp. 455-75
-
-
Chavent, M.1
Reddy, T.2
Goose, J.3
Dahl, A.C.E.4
Stone, J.E.5
Jobard, B.6
Sansom, M.S.P.7
-
13
-
-
84908374604
-
-
Ingólfsson, H. I.; Melo, M. N.; van Eerden, F. J.; Arnarez, C.; López, C. A.; Wassenaar, T. A.; Periole, X.; De Vries, A. H.; Tieleman, D. P.; Marrink, S. J. J. Am. Chem. Soc. 2014, 136, 14554-9
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 14554-9
-
-
Ingólfsson, H.I.1
Melo, M.N.2
Van Eerden, F.J.3
Arnarez, C.4
López, C.A.5
Wassenaar, T.A.6
Periole, X.7
De Vries, A.H.8
Tieleman, D.P.9
Marrink, S.J.10
-
14
-
-
84923884183
-
-
Reddy, T.; Shorthouse, D.; Parton, D. L.; Jefferys, E.; Fowler, P. W.; Chavent, M.; Baaden, M.; Sansom, M. S. Structure 2015, 23, 584-97
-
(2015)
Structure
, vol.23
, pp. 584-97
-
-
Reddy, T.1
Shorthouse, D.2
Parton, D.L.3
Jefferys, E.4
Fowler, P.W.5
Chavent, M.6
Baaden, M.7
Sansom, M.S.8
-
15
-
-
16344390562
-
-
Ulmschneider, M. B.; Sansom, M. S. P.; Di Nola, A. Proteins 2005, 59, 252-65
-
(2005)
Proteins
, vol.59
, pp. 252-65
-
-
Ulmschneider, M.B.1
Sansom, M.S.P.2
Di Nola, A.3
-
16
-
-
41449119304
-
-
Scott, K. A.; Bond, P. J.; Ivetac, A.; Chetwynd, A. P.; Khalid, S.; Sansom, M. S. P. Structure 2008, 16, 621-30
-
(2008)
Structure
, vol.16
, pp. 621-30
-
-
Scott, K.A.1
Bond, P.J.2
Ivetac, A.3
Chetwynd, A.P.4
Khalid, S.5
Sansom, M.S.P.6
-
17
-
-
84897057745
-
-
Kalli, A. C.; Devaney, I.; Sansom, M. S. P. Biochemistry 2014, 53, 1724-32
-
(2014)
Biochemistry
, vol.53
, pp. 1724-32
-
-
Kalli, A.C.1
Devaney, I.2
Sansom, M.S.P.3
-
18
-
-
33947139278
-
-
Kandt, C.; Ash, W. L.; Tieleman, D. P. Methods 2007, 41, 475-88
-
(2007)
Methods
, vol.41
, pp. 475-88
-
-
Kandt, C.1
Ash, W.L.2
Tieleman, D.P.3
-
20
-
-
84931274288
-
-
1st ed. Sansom, M. S. P. Biggin, P. C. Royal Society of Chemistry: Cambridge
-
Tieleman, D. P. In Molecular Simulations and Biomembranes: From Biophysics to Function, 1 st ed.; Sansom, M. S. P.; Biggin, P. C., Eds.; Royal Society of Chemistry: Cambridge, 2010; pp 1-25.
-
(2010)
Molecular Simulations and Biomembranes: From Biophysics to Function
, pp. 1-25
-
-
Tieleman, D.P.1
-
22
-
-
59049094817
-
-
1st ed. Jena, B. P. Elsevier: Amsterdam, Chapter 12
-
Tai, K.; Fowler, P. W.; Mokrab, Y.; Stansfeld, P.; Sansom, M. S. P. In Methods in Nano Cell Biology, 1 st ed.; Jena, B. P., Ed.; Elsevier: Amsterdam, 2008; Vol. 90, Chapter 12, pp 233-265.
-
(2008)
Methods in Nano Cell Biology
, vol.90
, pp. 233-265
-
-
Tai, K.1
Fowler, P.W.2
Mokrab, Y.3
Stansfeld, P.4
Sansom, M.S.P.5
-
24
-
-
41149134824
-
-
Jo, S.; Kim, T.; Im, W. PLoS one 2007, 2, e880
-
(2007)
PLoS one
, vol.2
, pp. e880
-
-
Jo, S.1
Kim, T.2
Im, W.3
-
26
-
-
84894191338
-
-
Wassenaar, T. A.; Pluhackova, K.; Böckmann, R. A.; Marrink, S. J.; Tieleman, D. P. J. Chem. Theory Comput. 2014, 10, 676-90
-
(2014)
J. Chem. Theory Comput.
, vol.10
, pp. 676-90
-
-
Wassenaar, T.A.1
Pluhackova, K.2
Böckmann, R.A.3
Marrink, S.J.4
Tieleman, D.P.5
-
29
-
-
0030966534
-
-
Shen, L.; Bassolino, D.; Stouch, T. Biophys. J. 1997, 73, 3-20
-
(1997)
Biophys. J.
, vol.73
, pp. 3-20
-
-
Shen, L.1
Bassolino, D.2
Stouch, T.3
-
30
-
-
0036618993
-
-
Faraldo-Gómez, J. D.; Smith, G. R.; Sansom, M. S. P. Eur. Biophys J. 2002, 31, 217-27
-
(2002)
Eur. Biophys J.
, vol.31
, pp. 217-27
-
-
Faraldo-Gómez, J.D.1
Smith, G.R.2
Sansom, M.S.P.3
-
31
-
-
79954466952
-
-
Staritzbichler, R.; Anselmi, C.; Forrest, L. R.; Faraldo-Gómez, J. D. J. Chem. Theory Comput. 2011, 7, 1167-76
-
(2011)
J. Chem. Theory Comput.
, vol.7
, pp. 1167-76
-
-
Staritzbichler, R.1
Anselmi, C.2
Forrest, L.R.3
Faraldo-Gómez, J.D.4
-
34
-
-
77954256616
-
-
Wolf, M. G.; Hoefling, M.; Aponte-Santamaría, C.; Grubmüller, H.; Groenhof, G. J. Comput. Chem. 2010, 31, 2169-74
-
(2010)
J. Comput. Chem.
, vol.31
, pp. 2169-74
-
-
Wolf, M.G.1
Hoefling, M.2
Aponte-Santamaría, C.3
Grubmüller, H.4
Groenhof, G.5
-
35
-
-
84875592758
-
-
Pronk, S.; Páll, S.; Schulz, R.; Larsson, P.; Bjelkmar, P.; Apostolov, R.; Shirts, M. R.; Smith, J. C.; Kasson, P. M.; van der Spoel, D.; Hess, B.; Lindahl, E. Bioinformatics 2013, 29, 845-54
-
(2013)
Bioinformatics
, vol.29
, pp. 845-54
-
-
Pronk, S.1
Páll, S.2
Schulz, R.3
Larsson, P.4
Bjelkmar, P.5
Apostolov, R.6
Shirts, M.R.7
Smith, J.C.8
Kasson, P.M.9
Van Der Spoel, D.10
Hess, B.11
Lindahl, E.12
-
37
-
-
36449002336
-
-
Zacharias, M.; Straatsma, T. P.; McCammon, J. A. J. Chem. Phys. 1994, 100, 9025
-
(1994)
J. Chem. Phys.
, vol.100
, pp. 9025
-
-
Zacharias, M.1
Straatsma, T.P.2
McCammon, J.A.3
-
38
-
-
0000249851
-
-
Beutler, T. C.; Mark, A. E.; van Schaik, R. C.; Gerber, P. R.; van Gunsteren, W. F. Chem. Phys. Lett. 1994, 222, 529-39
-
(1994)
Chem. Phys. Lett.
, vol.222
, pp. 529-39
-
-
Beutler, T.C.1
Mark, A.E.2
Van Schaik, R.C.3
Gerber, P.R.4
Van Gunsteren, W.F.5
-
40
-
-
36849077550
-
-
Steinbrecher, T.; Mobley, D. L.; Case, D. A. J. Chem. Phys. 2007, 127, 214108
-
(2007)
J. Chem. Phys.
, vol.127
, pp. 214108
-
-
Steinbrecher, T.1
Mobley, D.L.2
Case, D.A.3
-
41
-
-
27344436659
-
-
Phillips, J. C.; Braun, R.; Wang, W.; Gumbart, J.; Tajkhorshid, E.; Villa, E.; Chipot, C.; Skeel, R. D.; Kalé, L.; Schulten, K. J. Comput. Chem. 2005, 26, 1781-802
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1781-802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kalé, L.9
Schulten, K.10
-
43
-
-
84863693840
-
-
Gapsys, V.; Seeliger, D.; de Groot, B. L. J. Chem. Theory Comput. 2012, 8, 2373-82
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 2373-82
-
-
Gapsys, V.1
Seeliger, D.2
De Groot, B.L.3
-
44
-
-
0037207142
-
-
Edwards, S. H.; Thompson, D.; Baker, S. F.; Wood, S. P.; Wilton, D. C. Biochemistry 2002, 41, 15468-76
-
(2002)
Biochemistry
, vol.41
, pp. 15468-76
-
-
Edwards, S.H.1
Thompson, D.2
Baker, S.F.3
Wood, S.P.4
Wilton, D.C.5
-
45
-
-
58149164579
-
-
Löw, C.; Weininger, U.; Lee, H.; Schweimer, K.; Neundorf, I.; Beck-Sickinger, A. G.; Pastor, R. W.; Balbach, J. Biophys. J. 2008, 95, 4315-23
-
(2008)
Biophys. J.
, vol.95
, pp. 4315-23
-
-
Löw, C.1
Weininger, U.2
Lee, H.3
Schweimer, K.4
Neundorf, I.5
Beck-Sickinger, A.G.6
Pastor, R.W.7
Balbach, J.8
-
46
-
-
0028009093
-
-
Picot, D.; Loll, P. J.; Garavito, R. M. Nature 1994, 367, 243-9
-
(1994)
Nature
, vol.367
, pp. 243-9
-
-
Picot, D.1
Loll, P.J.2
Garavito, R.M.3
-
47
-
-
0035499892
-
-
Zhou, Y.; Morais-Cabral, J. H.; Kaufman, A.; MacKinnon, R. Nature 2001, 414, 43-8
-
(2001)
Nature
, vol.414
, pp. 43-8
-
-
Zhou, Y.1
Morais-Cabral, J.H.2
Kaufman, A.3
Mackinnon, R.4
-
49
-
-
33646446451
-
-
Kucerka, N.; Tristram-Nagle, S.; Nagle, J. F. J. Membr. Biol. 2005, 208, 193-202
-
(2005)
J. Membr. Biol.
, vol.208
, pp. 193-202
-
-
Kucerka, N.1
Tristram-Nagle, S.2
Nagle, J.F.3
-
50
-
-
77953377650
-
-
Klauda, J. B.; Venable, R. M.; Freites, J. A.; O'Connor, J. W.; Tobias, D. J.; Mondragon-Ramirez, C.; Vorobyov, I.; MacKerell, A. D.; Pastor, R. W. J. Phys. Chem. B 2010, 114, 7830-43
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 7830-43
-
-
Klauda, J.B.1
Venable, R.M.2
Freites, J.A.3
O'Connor, J.W.4
Tobias, D.J.5
Mondragon-Ramirez, C.6
Vorobyov, I.7
Mackerell, A.D.8
Pastor, R.W.9
-
52
-
-
84873719639
-
-
Salomon-Ferrer, R.; Case, D. A.; Walker, R. C. Wiley Interdiscip. Rev.: Comput. Mol. Sci. 2013, 3, 198-210
-
(2013)
Wiley Interdiscip. Rev.: Comput. Mol. Sci.
, vol.3
, pp. 198-210
-
-
Salomon-Ferrer, R.1
Case, D.A.2
Walker, R.C.3
-
53
-
-
4744365803
-
-
Ferrari, A. M.; Wei, B. Q.; Costantino, L.; Shoichet, B. K. J. Med. Chem. 2004, 47, 5076-84
-
(2004)
J. Med. Chem.
, vol.47
, pp. 5076-84
-
-
Ferrari, A.M.1
Wei, B.Q.2
Costantino, L.3
Shoichet, B.K.4
-
54
-
-
0000388705
-
-
Hess, B.; Bekker, H.; Berendsen, H. J. C.; Fraaije, J. G. E. M. J. Comput. Chem. 1997, 18, 1463-72
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 1463-72
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
55
-
-
3142714765
-
-
Mackerell, A. D.; Feig, M.; Brooks, C. L. J. Comput. Chem. 2004, 25, 1400-15
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1400-15
-
-
Mackerell, A.D.1
Feig, M.2
Brooks, C.L.3
-
56
-
-
77950106854
-
-
Bjelkmar, P.; Larsson, P.; Cuendet, M. A.; Hess, B.; Lindahl, E. J. Chem. Theory Comput 2010, 6, 459-66
-
(2010)
J. Chem. Theory Comput
, vol.6
, pp. 459-66
-
-
Bjelkmar, P.1
Larsson, P.2
Cuendet, M.A.3
Hess, B.4
Lindahl, E.5
-
57
-
-
50349095199
-
-
Wee, C. L.; Balali-Mood, K.; Gavaghan, D.; Sansom, M. S. P. Biophys. J. 2008, 95, 1649-57
-
(2008)
Biophys. J.
, vol.95
, pp. 1649-57
-
-
Wee, C.L.1
Balali-Mood, K.2
Gavaghan, D.3
Sansom, M.S.P.4
-
59
-
-
33947384532
-
-
Fowler, P. W.; Balali-Mood, K.; Deol, S.; Coveney, P. V.; Sansom, M. S. P. Biochemistry 2007, 46, 3108-15
-
(2007)
Biochemistry
, vol.46
, pp. 3108-15
-
-
Fowler, P.W.1
Balali-Mood, K.2
Deol, S.3
Coveney, P.V.4
Sansom, M.S.P.5
-
60
-
-
58149331214
-
-
Fowler, P. W.; Tai, K.; Sansom, M. S. P. Biophys. J. 2008, 95, 5062-72
-
(2008)
Biophys. J.
, vol.95
, pp. 5062-72
-
-
Fowler, P.W.1
Tai, K.2
Sansom, M.S.P.3
-
61
-
-
84908105583
-
-
Jefferys, E.; Sansom, M. S. P.; Fowler, P. W. Faraday Discuss. 2014, 169, 209-23
-
(2014)
Faraday Discuss.
, vol.169
, pp. 209-23
-
-
Jefferys, E.1
Sansom, M.S.P.2
Fowler, P.W.3
-
62
-
-
79958185452
-
-
Michaud-Agrawal, N.; Denning, E. J.; Woolf, T. B.; Beckstein, O. J. Comput. Chem. 2011, 32, 2319-27
-
(2011)
J. Comput. Chem.
, vol.32
, pp. 2319-27
-
-
Michaud-Agrawal, N.1
Denning, E.J.2
Woolf, T.B.3
Beckstein, O.4
-
63
-
-
84890565104
-
-
Gapsys, V.; de Groot, B. L.; Briones, R. J. Comput.-Aided Mol. Des. 2013, 27, 845-58
-
(2013)
J. Comput.-Aided Mol. Des.
, vol.27
, pp. 845-58
-
-
Gapsys, V.1
De Groot, B.L.2
Briones, R.3
-
64
-
-
0029878720
-
-
Humphrey, W.; Dalke, A.; Schulten, K. J. Mol. Graphics 1996, 14, 33-8
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 33-8
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
|