Corrigendum to: g_membed: Efficient insertion of a membrane protein into an equilibrated lipid bilayer with minimal perturbation (Article in J. Comput. Chem., 31, (2010), (2169-2174), 10.1002/jcc.21507);G-membed: Efficient insertion of a membrane protein into an equilibrated lipid bilayer with minimal perturbation

Journal of Computational Chemistry

Volumn 31, Issue 11, 2010, Pages 2169-2174

  Wolf, Maarten G ^a   Hoefling, Martin ^a   Aponte SantamaríA, Camilo ^a   Grubmüller, Helmut ^a   Groenhof, Gerrit ^a  

^a MAX PLANCK INSTITUTE FOR BIOPHYSICAL CHEMISTRY   (Germany)

Author keywords

Computer simulations; Gromacs; Membrane; Molecular dynamics; Protein insertion

Indexed keywords

BIOLOGICAL MEMBRANES; COMPUTER SIMULATION; HYDRATION; LIPID BILAYERS; LIPIDS; MEMBRANES; MOLECULAR DYNAMICS;

COMPUTATIONAL TOOLS; GROMACS; HYDRATED MEMBRANES; HYDRATION LAYERS; LIPID PROPERTIES; MEMBRANE PROTEINS; MOLECULAR DYNAMICS SIMULATIONS; PROTEIN STRUCTURES;

PROTEINS;

EID: 77954256616     PISSN: 01928651     EISSN: 1096987X     Source Type: Journal    
DOI: 10.1002/jcc.24386     Document Type: Erratum

References (29)

1. Biggin, P.; Bond, P. Methods Mol Biol 2008, 443, 147.
2. Wallin, E.; von Heijne, G. Protein Sci 1998, 7, 1029.
3. Overington, J.; Al-Lazikani, B.; Hopkins, A. Nat Rev Drug Discov 2006, 5, 993.
4. Carpenter, E.; Beis, K.; Cameron, A.; Iwata, S. Curr Opin Struct Biol 2008, 18, 581.
5. Woolf, T. B.; Roux, B. Proteins 1996, 24, 92.
6. Faraldo-Gómez, J.; Smith, G.; Sansom, M. Eur Biophys J 2002, 31, 217.
7. Shen, L.; Bassolino D.; Stouch, T. Biophys J 1997, 73, 3.
8. Kandt, C.; Ash, W.; Tieleman, D. Methods 2007, 41, 475.
9. Scott, K.; Bond, P.; Ivetac, A.; Chetwynd, A.; Khalid, S.; Sansom, M. Structure 2008, 16, 621.
10. Hess, B.; Kutzner, C.; van der Spoel, D.; Lindahl, E. J Chem Theor Comp 2008, 4, 435.
11. Lau, T.-L.; Kim, C.; Ginsberg, M.; Ulmer, T. EMBO J 2009, 28, 1351.
12. Johansson, M.; Alioth, S.; Hu, K.; Walser, R.; Koebnik, R.; Pervushin, K. Biochemistry 2007, 46, 1128.
13. Deisenhofer, J.; Epp, O.; Sinning, I.; Michel, H. J Mol Biol 1995, 246, 429.
14. Fischer, G.; Kosinska-Eriksson, U.; Aponte-Santamaría, C.; Palmgren, M.; Geijer, C.; Hedfalk, K.; Hohmann, S.; de Groot, B. L.; Neutze, R.; Lindkvist-Petersson, K. PLoS Biol 2009, 7, e1000130.
15. Berger, O.; Edholm, O.; Jühnig, F. Biophys J 1997, 72, 2002.
16. Tieleman, P.; MacCallum, J.; Ash, W.; Kandt, C.; Xu, Z.; Monticelli, L. J Phys: Condens Matter 2006, 18, S1221.
17. Siu, S. W. I.; Vácha, R.; Jungwirth, P.; Böchmann, R. A. J Chem Phys 2008, 128, 125103.
18. Periole, X.; Huber, T.; Marrink, S.-J.; Sakmar, T. P. J Am. Chem Soc 2007, 129, 10126.
19. Ollila, O. H. S.; Risselada, H. J.; Louhivuori, M.; Lindahl, E.; Vattulainen, I.; Marrink, S. J. Phys Rev Lett 2009, 102, 078101.
20. Kaminski, G.; Friesner, R.; Tirado-Rives, J.; Jorgensen, W. J Phys Chem B 2001, 105, 6474.
21. Berendsen, H. J. C.; Postma, J. P. M.; van Gunsteren, W. F.; Hermans, J. In Intermolecular Forces; Pullman, B., Eds.; D. Reidel Publishing Company: Dordrecht, 1981; pp. 331-342.
22. Sorin, E. J.; Pande, V. S. Biophys J 2005, 88, 2472.
23. Jorgensen, W.; Chandrasekhar, J.; Madura, J.; Impey, R.; Klein, M. J Chem Phys 1983, 79, 926.
24. van Gunsteren, W. F.; Berendsen, H. J. C. Gromos-87 Manual Biomos BV Nijenborgh 4, 1947 AG Groningen, The Netherlands, 1987.
25. Darden, T.; York, D.; Pedersen, L. J Chem. Phys 1993, 98, 10089.
26. Hess, B.; Bekker, H.; Berendsen, H. J. C.; Fraaije, J. G. E. M. J Comput Chem 1997, 18, 1463.
27. Bussi, G.; Donadio, D.; Parrinello, M. J Chem Phys 2007, 126, 014101.
28. Berendsen, H.; Postma, J.; DiNola, A.; Haak, J. J Chem Phys 1984, 81, 3684.
29. DeLano, W. The Pymol Molecular Graphics System; DeLano Scientific LLC: Palo Alto, CA, USA, 2008. Available at: http://www.pymol.org.