-
3
-
-
77953229115
-
The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway
-
Lieber MR. 2010. The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu Rev Biochem 79:181-211.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 181-211
-
-
Lieber, M.R.1
-
4
-
-
35348890199
-
Bacterial DNA repair by nonhomologous end joining
-
Shuman S, Glickman MS. 2007. Bacterial DNA repair by nonhomologous end joining. Nat Rev Microbiol 5:852-861.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 852-861
-
-
Shuman, S.1
Glickman, M.S.2
-
5
-
-
80755187806
-
Double-strand break end resection and repair pathway choice
-
Symington LS, Gautier J. 2011. Double-strand break end resection and repair pathway choice. Annu Rev Genet 45:247-271.
-
(2011)
Annu Rev Genet
, vol.45
, pp. 247-271
-
-
Symington, L.S.1
Gautier, J.2
-
6
-
-
76749090482
-
The processing of double-stranded DNA breaks for recombinational repair by helicase-nuclease complexes
-
Yeeles JT, Dillingham MS. 2010. The processing of double-stranded DNA breaks for recombinational repair by helicase-nuclease complexes. DNA Repair 9:276-285.
-
(2010)
DNA Repair
, vol.9
, pp. 276-285
-
-
Yeeles, J.T.1
Dillingham, M.S.2
-
7
-
-
84879682699
-
Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis
-
Ford CB, Shah RR, Maeda MK, Gagneux S, Murray MB, Cohen T, Johnston JC, Gardy J, Lipsitch M, Fortune SM. 2013. Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis. Nat Genet 45:784-790.
-
(2013)
Nat Genet
, vol.45
, pp. 784-790
-
-
Ford, C.B.1
Shah, R.R.2
Maeda, M.K.3
Gagneux, S.4
Murray, M.B.5
Cohen, T.6
Johnston, J.C.7
Gardy, J.8
Lipsitch, M.9
Fortune, S.M.10
-
9
-
-
84860734902
-
Distinct mechanisms of DNA repair in mycobacteria and their implications in attenuation of the pathogen growth
-
Kurthkoti K, Varshney U. 2012. Distinct mechanisms of DNA repair in mycobacteria and their implications in attenuation of the pathogen growth. Mech Ageing Dev 133:138-146.
-
(2012)
Mech Ageing Dev
, vol.133
, pp. 138-146
-
-
Kurthkoti, K.1
Varshney, U.2
-
10
-
-
77956223304
-
DNA repair systems and the pathogenesis of Mycobacterium tuberculosis: varying activities at different stages of infection
-
Gorna AE, Bowater RP, Dziadek J. 2010. DNA repair systems and the pathogenesis of Mycobacterium tuberculosis: varying activities at different stages of infection. Clin Sci 119:187-202.
-
(2010)
Clin Sci
, vol.119
, pp. 187-202
-
-
Gorna, A.E.1
Bowater, R.P.2
Dziadek, J.3
-
11
-
-
84861578543
-
Enzymatic removal of ribonucleotides from DNA is essential for mammalian genome integrity and development
-
Reijns MA, Rabe B, Rigby RE, Mill P, Astell KR, Lettice LA, Boyle S, Leitch A, Keighren M, Kilanowski F, Devenney PS, Sexton D, Grimes G, Holt IJ, Hill RE, Taylor MS, Lawson KA, Dorin JR, Jackson AP. 2012. Enzymatic removal of ribonucleotides from DNA is essential for mammalian genome integrity and development. Cell 149:1008-1022.
-
(2012)
Cell
, vol.149
, pp. 1008-1022
-
-
Reijns, M.A.1
Rabe, B.2
Rigby, R.E.3
Mill, P.4
Astell, K.R.5
Lettice, L.A.6
Boyle, S.7
Leitch, A.8
Keighren, M.9
Kilanowski, F.10
Devenney, P.S.11
Sexton, D.12
Grimes, G.13
Holt, I.J.14
Hill, R.E.15
Taylor, M.S.16
Lawson, K.A.17
Dorin, J.R.18
Jackson, A.P.19
-
12
-
-
84866462296
-
Mammalian RNase H2 removes ribonucleotides from DNA to maintain genome integrity
-
Hiller B, Achleitner M, Glage S, Naumann R, Behrendt R, Roers A. 2012. Mammalian RNase H2 removes ribonucleotides from DNA to maintain genome integrity. J Exp Med 209:1419-1426.
-
(2012)
J Exp Med
, vol.209
, pp. 1419-1426
-
-
Hiller, B.1
Achleitner, M.2
Glage, S.3
Naumann, R.4
Behrendt, R.5
Roers, A.6
-
13
-
-
84871340015
-
Bacterial DNA repair: recent insights into the mechanism of RecBCD, AddAB and AdnAB
-
Wigley DB. 2013. Bacterial DNA repair: recent insights into the mechanism of RecBCD, AddAB and AdnAB. Nat Rev Microbiol 11:9-13.
-
(2013)
Nat Rev Microbiol
, vol.11
, pp. 9-13
-
-
Wigley, D.B.1
-
14
-
-
78651083451
-
Mycobacteria exploit three genetically distinct DNA double-strand break repair pathways
-
Gupta R, Barkan D, Redelman-Sidi G, Shuman S, Glickman MS. 2011. Mycobacteria exploit three genetically distinct DNA double-strand break repair pathways. Mol Microbiol 79:316-330.
-
(2011)
Mol Microbiol
, vol.79
, pp. 316-330
-
-
Gupta, R.1
Barkan, D.2
Redelman-Sidi, G.3
Shuman, S.4
Glickman, M.S.5
-
15
-
-
34447508310
-
Mycobacterial nonhomologous end joining mediates mutagenic repair of chromosomal double-strand DNA breaks
-
Stephanou NC, Gao F, Bongiorno P, Ehrt S, Schnappinger D, Shuman S, Glickman MS. 2007. Mycobacterial nonhomologous end joining mediates mutagenic repair of chromosomal double-strand DNA breaks. J Bacteriol 189:5237-5246.
-
(2007)
J Bacteriol
, vol.189
, pp. 5237-5246
-
-
Stephanou, N.C.1
Gao, F.2
Bongiorno, P.3
Ehrt, S.4
Schnappinger, D.5
Shuman, S.6
Glickman, M.S.7
-
17
-
-
0347725697
-
Analysis of the Bacillus subtilis recO gene: RecO forms part of the RecFLOR function
-
Fernandez S, Kobayashi Y, Ogasawara N, Alonso JC. 1999. Analysis of the Bacillus subtilis recO gene: RecO forms part of the RecFLOR function. Mol Gen Genet 261:567-573.
-
(1999)
Mol Gen Genet
, vol.261
, pp. 567-573
-
-
Fernandez, S.1
Kobayashi, Y.2
Ogasawara, N.3
Alonso, J.C.4
-
18
-
-
84876347637
-
A dual role for mycobacterial RecO in RecAdependent homologous recombination and RecA-independent singlestrand annealing
-
Gupta R, Ryzhikov M, Koroleva O, Unciuleac M, Shuman S, Korolev S, Glickman MS. 2013. A dual role for mycobacterial RecO in RecAdependent homologous recombination and RecA-independent singlestrand annealing. Nucleic Acids Res 41:2284-2295.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 2284-2295
-
-
Gupta, R.1
Ryzhikov, M.2
Koroleva, O.3
Unciuleac, M.4
Shuman, S.5
Korolev, S.6
Glickman, M.S.7
-
19
-
-
78651379486
-
DNA binding, coprotease, and strand exchange activities of mycobacterial RecA proteins: implications for functional diversity among RecA nucleoprotein filaments
-
Patil KN, Singh P, Muniyappa K. 2011. DNA binding, coprotease, and strand exchange activities of mycobacterial RecA proteins: implications for functional diversity among RecA nucleoprotein filaments. Biochemistry 50:300-311.
-
(2011)
Biochemistry
, vol.50
, pp. 300-311
-
-
Patil, K.N.1
Singh, P.2
Muniyappa, K.3
-
20
-
-
0038470002
-
Characterization ofDNAstrand transfer promoted by Mycobacterium smegmatis RecA reveals functional diversity with Mycobacterium tuberculosis RecA
-
Ganesh N, Muniyappa K. 2003. Characterization ofDNAstrand transfer promoted by Mycobacterium smegmatis RecA reveals functional diversity with Mycobacterium tuberculosis RecA. Biochemistry 42:7216-7225.
-
(2003)
Biochemistry
, vol.42
, pp. 7216-7225
-
-
Ganesh, N.1
Muniyappa, K.2
-
21
-
-
0038153902
-
Crystal structures of Mycobacterium smegmatis RecA and its nucleotide complexes
-
Datta S, Krishna R, Ganesh N, Chandra NR, Muniyappa K, Vijayan M. 2003. Crystal structures of Mycobacterium smegmatis RecA and its nucleotide complexes. J Bacteriol 185:4280-4284.
-
(2003)
J Bacteriol
, vol.185
, pp. 4280-4284
-
-
Datta, S.1
Krishna, R.2
Ganesh, N.3
Chandra, N.R.4
Muniyappa, K.5
Vijayan, M.6
-
22
-
-
0035824667
-
Characterization of single-stranded DNA-binding proteins from mycobacteria. The carboxylterminal of domain of SSB is essential for stable association with its cognate RecA protein
-
Reddy MS, Guhan N, Muniyappa K. 2001. Characterization of single-stranded DNA-binding proteins from mycobacteria. The carboxylterminal of domain of SSB is essential for stable association with its cognate RecA protein. J Biol Chem 276:45959-45968.
-
(2001)
J Biol Chem
, vol.276
, pp. 45959-45968
-
-
Reddy, M.S.1
Guhan, N.2
Muniyappa, K.3
-
23
-
-
73649109198
-
RecA-independent DNA damage induction of Mycobacterium tuberculosis ruvC despite an appropriately located SOS box
-
Dawson LF, Dillury J, Davis EO. 2010. RecA-independent DNA damage induction of Mycobacterium tuberculosis ruvC despite an appropriately located SOS box. J Bacteriol 192:599-603.
-
(2010)
J Bacteriol
, vol.192
, pp. 599-603
-
-
Dawson, L.F.1
Dillury, J.2
Davis, E.O.3
-
24
-
-
84856894233
-
A TetR-like regulator broadly affects the expressions of diverse genes in Mycobacterium smegmatis
-
Yang M, Gao C, Cui T, An J, He ZG. 2012. A TetR-like regulator broadly affects the expressions of diverse genes in Mycobacterium smegmatis. Nucleic Acids Res 40:1009-1020.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 1009-1020
-
-
Yang, M.1
Gao, C.2
Cui, T.3
An, J.4
He, Z.G.5
-
25
-
-
0036441290
-
DNA damage induction of recA in Mycobacterium tuberculosis independently of RecA and LexA
-
Davis EO, Springer B, Gopaul KK, PapavinasasundaramKG, Sander P, Bottger EC. 2002. DNA damage induction of recA in Mycobacterium tuberculosis independently of RecA and LexA. Mol Microbiol 46:791-800.
-
(2002)
Mol Microbiol
, vol.46
, pp. 791-800
-
-
Davis, E.O.1
Springer, B.2
Gopaul, K.K.3
Papavinasasundaram, K.G.4
Sander, P.5
Bottger, E.C.6
-
26
-
-
0036267340
-
Definition of the mycobacterial SOS box and use to identify LexA-regulated genes in Mycobacterium tuberculosis
-
Davis EO, Dullaghan EM, Rand L. 2002. Definition of the mycobacterial SOS box and use to identify LexA-regulated genes in Mycobacterium tuberculosis. J Bacteriol 184:3287-3295.
-
(2002)
J Bacteriol
, vol.184
, pp. 3287-3295
-
-
Davis, E.O.1
Dullaghan, E.M.2
Rand, L.3
-
27
-
-
0034931138
-
Identification of some DNA damage-inducible genes of Mycobacterium tuberculosis: apparent lack of correlation with LexA binding
-
Brooks PC, Movahedzadeh F, Davis EO. 2001. Identification of some DNA damage-inducible genes of Mycobacterium tuberculosis: apparent lack of correlation with LexA binding. J Bacteriol 183:4459-4467.
-
(2001)
J Bacteriol
, vol.183
, pp. 4459-4467
-
-
Brooks, P.C.1
Movahedzadeh, F.2
Davis, E.O.3
-
28
-
-
84876294656
-
Evidence for the role of Mycobacterium tuberculosis RecG helicase in DNA repair and recombination
-
Thakur RS, Basavaraju S, Somyajit K, Jain A, Subramanya S, Muniyappa K, Nagaraju G. 2013. Evidence for the role of Mycobacterium tuberculosis RecG helicase in DNA repair and recombination. FEBS J 280:1841-1860.
-
(2013)
FEBS J
, vol.280
, pp. 1841-1860
-
-
Thakur, R.S.1
Basavaraju, S.2
Somyajit, K.3
Jain, A.4
Subramanya, S.5
Muniyappa, K.6
Nagaraju, G.7
-
29
-
-
33747160146
-
Structure of Mycobacterium tuberculosis RuvA, a protein involved in recombination
-
Prabu JR, Thamotharan S, Khanduja JS, Alipio EZ, Kim CY, Waldo GS, Terwilliger TC, Segelke B, Lekin T, Toppani D, Hung LW, Yu M, Bursey E, Muniyappa K, Chandra NR, Vijayan M. 2006. Structure of Mycobacterium tuberculosis RuvA, a protein involved in recombination. Acta Crystallogr Sect F Struct Biol Cryst Commun 62:731-734.
-
(2006)
Acta Crystallogr Sect F Struct Biol Cryst Commun
, vol.62
, pp. 731-734
-
-
Prabu, J.R.1
Thamotharan, S.2
Khanduja, J.S.3
Alipio, E.Z.4
Kim, C.Y.5
Waldo, G.S.6
Terwilliger, T.C.7
Segelke, B.8
Lekin, T.9
Toppani, D.10
Hung, L.W.11
Yu, M.12
Bursey, E.13
Muniyappa, K.14
Chandra, N.R.15
Vijayan, M.16
-
30
-
-
84855481783
-
Functional analysis of DNA replication fork reversal catalyzed by Mycobacterium tuberculosis RuvAB proteins
-
Khanduja JS, Muniyappa K. 2012. Functional analysis of DNA replication fork reversal catalyzed by Mycobacterium tuberculosis RuvAB proteins. J Biol Chem 287:1345-1360.
-
(2012)
J Biol Chem
, vol.287
, pp. 1345-1360
-
-
Khanduja, J.S.1
Muniyappa, K.2
-
31
-
-
58549087167
-
Mycobacterium tuberculosis RuvA induces two distinct types of structural distortions between the homologous and heterologous Holliday junctions
-
Khanduja JS, Tripathi P, Muniyappa K. 2009. Mycobacterium tuberculosis RuvA induces two distinct types of structural distortions between the homologous and heterologous Holliday junctions. Biochemistry 48:27-40.
-
(2009)
Biochemistry
, vol.48
, pp. 27-40
-
-
Khanduja, J.S.1
Tripathi, P.2
Muniyappa, K.3
-
32
-
-
0034889360
-
Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system
-
Aravind L, Koonin EV. 2001. Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system. Genome Res 11:1365-1374.
-
(2001)
Genome Res
, vol.11
, pp. 1365-1374
-
-
Aravind, L.1
Koonin, E.V.2
-
33
-
-
34247279304
-
Last stop on the road to repair: structure of E. coli DNA ligase bound to nicked DNA-adenylate
-
Nandakumar J, Nair PA, Shuman S. 2007. Last stop on the road to repair: structure of E. coli DNA ligase bound to nicked DNA-adenylate. Mol Cell 26:257-271.
-
(2007)
Mol Cell
, vol.26
, pp. 257-271
-
-
Nandakumar, J.1
Nair, P.A.2
Shuman, S.3
-
34
-
-
7444269607
-
Mycobacterial Ku and ligase proteins constitute a two-component NHEJ repair machine
-
Della M, Palmbos PL, Tseng HM, Tonkin LM, Daley JM, Topper LM, Pitcher RS, Tomkinson AE, Wilson TE, Doherty AJ. 2004. Mycobacterial Ku and ligase proteins constitute a two-component NHEJ repair machine. Science 306:683-685.
-
(2004)
Science
, vol.306
, pp. 683-685
-
-
Della, M.1
Palmbos, P.L.2
Tseng, H.M.3
Tonkin, L.M.4
Daley, J.M.5
Topper, L.M.6
Pitcher, R.S.7
Tomkinson, A.E.8
Wilson, T.E.9
Doherty, A.J.10
-
35
-
-
0037031655
-
Identification of a DNA nonhomologous end-joining complex in bacteria
-
Weller GR, Kysela B, Roy R, Tonkin LM, Scanlan E, Della M, Devine SK, Day JP, Wilkinson A, d'Adda di Fagagna F, Devine KM, Bowater RP, Jeggo PA, Jackson SP, Doherty AJ. 2002. Identification of a DNA nonhomologous end-joining complex in bacteria. Science 297:1686-1689.
-
(2002)
Science
, vol.297
, pp. 1686-1689
-
-
Weller, G.R.1
Kysela, B.2
Roy, R.3
Tonkin, L.M.4
Scanlan, E.5
Della, M.6
Devine, S.K.7
Day, J.P.8
Wilkinson, A.9
d'Adda di Fagagna, F.10
Devine, K.M.11
Bowater, R.P.12
Jeggo, P.A.13
Jackson, S.P.14
Doherty, A.J.15
-
36
-
-
39449129496
-
The pathways and outcomes of mycobacterial NHEJ depend on the structure of the broken DNA ends
-
Aniukwu J, Glickman MS, Shuman S. 2008. The pathways and outcomes of mycobacterial NHEJ depend on the structure of the broken DNA ends. Genes Dev 22:512-527.
-
(2008)
Genes Dev
, vol.22
, pp. 512-527
-
-
Aniukwu, J.1
Glickman, M.S.2
Shuman, S.3
-
37
-
-
18744380665
-
Mechanism of nonhomologous end-joining in mycobacteria: a low-fidelity repair system driven by Ku, ligase D and ligase C
-
Gong C, Bongiorno P, Martins A, Stephanou NC, Zhu H, Shuman S, Glickman MS. 2005. Mechanism of nonhomologous end-joining in mycobacteria: a low-fidelity repair system driven by Ku, ligase D and ligase C. Nat Struct Mol Biol 12:304-312.
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 304-312
-
-
Gong, C.1
Bongiorno, P.2
Martins, A.3
Stephanou, N.C.4
Zhu, H.5
Shuman, S.6
Glickman, M.S.7
-
38
-
-
2442717521
-
Biochemical and genetic analysis of the four DNA ligases of mycobacteria
-
Gong C, Martins A, Bongiorno P, Glickman M, Shuman S. 2004. Biochemical and genetic analysis of the four DNA ligases of mycobacteria. J Biol Chem 279:20594-20606.
-
(2004)
J Biol Chem
, vol.279
, pp. 20594-20606
-
-
Gong, C.1
Martins, A.2
Bongiorno, P.3
Glickman, M.4
Shuman, S.5
-
39
-
-
33645097172
-
The forespore line of gene expression in Bacillus subtilis
-
Wang ST, Setlow B, Conlon EM, Lyon JL, Imamura D, Sato T, Setlow P, Losick R, Eichenberger P. 2006. The forespore line of gene expression in Bacillus subtilis. J Mol Biol 358:16-37.
-
(2006)
J Mol Biol
, vol.358
, pp. 16-37
-
-
Wang, S.T.1
Setlow, B.2
Conlon, E.M.3
Lyon, J.L.4
Imamura, D.5
Sato, T.6
Setlow, P.7
Losick, R.8
Eichenberger, P.9
-
40
-
-
34547842081
-
NHEJ protects mycobacteria in stationary phase against the harmful effects of desiccation
-
Pitcher RS, Green AJ, Brzostek A, Korycka-Machala M, Dziadek J, Doherty AJ. 2007. NHEJ protects mycobacteria in stationary phase against the harmful effects of desiccation. DNA Repair 6:1271-1276.
-
(2007)
DNA Repair
, vol.6
, pp. 1271-1276
-
-
Pitcher, R.S.1
Green, A.J.2
Brzostek, A.3
Korycka-Machala, M.4
Dziadek, J.5
Doherty, A.J.6
-
41
-
-
33744964530
-
Crystal structure and nonhomologous end-joining function of the ligase component of mycobacterium DNA ligase D
-
Akey D, Martins A, Aniukwu J, Glickman MS, Shuman S, Berger JM. 2006. Crystal structure and nonhomologous end-joining function of the ligase component of mycobacterium DNA ligase D. J Biol Chem 281: 13412-13423.
-
(2006)
J Biol Chem
, vol.281
, pp. 13412-13423
-
-
Akey, D.1
Martins, A.2
Aniukwu, J.3
Glickman, M.S.4
Shuman, S.5
Berger, J.M.6
-
42
-
-
33846382667
-
Structure and function of a mycobacterial NHEJ DNA repair polymerase
-
Pitcher RS, Brissett NC, Picher AJ, Andrade P, Juarez R, Thompson D, Fox GC, Blanco L, Doherty AJ. 2007. Structure and function of a mycobacterial NHEJ DNA repair polymerase. J Mol Biol 366: 391-405.
-
(2007)
J Mol Biol
, vol.366
, pp. 391-405
-
-
Pitcher, R.S.1
Brissett, N.C.2
Picher, A.J.3
Andrade, P.4
Juarez, R.5
Thompson, D.6
Fox, G.C.7
Blanco, L.8
Doherty, A.J.9
-
43
-
-
32444451295
-
Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
-
Zhu H, Nandakumar J, Aniukwu J, Wang LK, Glickman MS, Lima CD, Shuman S. 2006. Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D. Proc Natl Acad Sci USA 103:1711-1716.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 1711-1716
-
-
Zhu, H.1
Nandakumar, J.2
Aniukwu, J.3
Wang, L.K.4
Glickman, M.S.5
Lima, C.D.6
Shuman, S.7
-
44
-
-
21244476766
-
Biochemical properties of Saccharomyces cerevisiae DNA polymerase IV
-
Bebenek K, Garcia-Diaz M, Patishall SR, Kunkel TA. 2005. Biochemical properties of Saccharomyces cerevisiae DNA polymerase IV. J Biol Chem 280:20051-20058.
-
(2005)
J Biol Chem
, vol.280
, pp. 20051-20058
-
-
Bebenek, K.1
Garcia-Diaz, M.2
Patishall, S.R.3
Kunkel, T.A.4
-
45
-
-
35349028355
-
Structure of a NHEJ polymerasemediated DNA synaptic complex
-
Brissett NC, Pitcher RS, Juarez R, Picher AJ, Green AJ, Dafforn TR, Fox GC, Blanco L, Doherty AJ. 2007. Structure of a NHEJ polymerasemediated DNA synaptic complex. Science 318:456-459.
-
(2007)
Science
, vol.318
, pp. 456-459
-
-
Brissett, N.C.1
Pitcher, R.S.2
Juarez, R.3
Picher, A.J.4
Green, A.J.5
Dafforn, T.R.6
Fox, G.C.7
Blanco, L.8
Doherty, A.J.9
-
46
-
-
77955590825
-
Structure of bacterial LigD 3'-phosphoesterase unveils a DNA repair superfamily
-
Nair PA, Smith P, Shuman S. 2010. Structure of bacterial LigD 3'-phosphoesterase unveils a DNA repair superfamily. Proc Natl Acad Sci USA 107:12822-12827.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 12822-12827
-
-
Nair, P.A.1
Smith, P.2
Shuman, S.3
-
47
-
-
33744929414
-
Substrate specificity and structure-function analysis of the 3'-phosphoesterase component of the bacterial NHEJ protein, DNA ligase D
-
Zhu H, Shuman S. 2006. Substrate specificity and structure-function analysis of the 3'-phosphoesterase component of the bacterial NHEJ protein, DNA ligase D. J Biol Chem 281:13873-13881.
-
(2006)
J Biol Chem
, vol.281
, pp. 13873-13881
-
-
Zhu, H.1
Shuman, S.2
-
48
-
-
26644442141
-
Essential constituents of the 3'-phosphoesterase domain of bacterial DNA ligase D, a nonhomologous end-joining enzyme
-
Zhu H, Wang LK, Shuman S. 2005. Essential constituents of the 3'-phosphoesterase domain of bacterial DNA ligase D, a nonhomologous end-joining enzyme. J Biol Chem 280:33707-33715.
-
(2005)
J Biol Chem
, vol.280
, pp. 33707-33715
-
-
Zhu, H.1
Wang, L.K.2
Shuman, S.3
-
49
-
-
22544469168
-
Novel 3'-ribonuclease and 3'-phosphatase activities of the bacterial non-homologous end-joining protein, DNA ligase D
-
Zhu H, Shuman S. 2005. Novel 3'-ribonuclease and 3'-phosphatase activities of the bacterial non-homologous end-joining protein, DNA ligase D. J Biol Chem 280:25973-25981.
-
(2005)
J Biol Chem
, vol.280
, pp. 25973-25981
-
-
Zhu, H.1
Shuman, S.2
-
50
-
-
84871589113
-
Characterization of Mycobacterium smegmatis PolD2 and PolD1 as RNA/DNA polymerases homologous to the POL domain of bacterial DNA ligase D
-
Zhu H, Bhattarai H, Yan HG, Shuman S, Glickman MS. 2012. Characterization of Mycobacterium smegmatis PolD2 and PolD1 as RNA/DNA polymerases homologous to the POL domain of bacterial DNA ligase D. Biochemistry 51:10147-10158.
-
(2012)
Biochemistry
, vol.51
, pp. 10147-10158
-
-
Zhu, H.1
Bhattarai, H.2
Yan, H.G.3
Shuman, S.4
Glickman, M.S.5
-
51
-
-
34447515950
-
Mycobacterial UvrD1 is a Ku-dependent DNA helicase that plays a role in multiple DNA repair events, including double-strand break repair
-
Sinha KM, Stephanou NC, Gao F, Glickman MS, Shuman S. 2007. Mycobacterial UvrD1 is a Ku-dependent DNA helicase that plays a role in multiple DNA repair events, including double-strand break repair. J Biol Chem 282:15114-15125.
-
(2007)
J Biol Chem
, vol.282
, pp. 15114-15125
-
-
Sinha, K.M.1
Stephanou, N.C.2
Gao, F.3
Glickman, M.S.4
Shuman, S.5
-
52
-
-
79957537415
-
A Sir2-like protein participates in mycobacterial NHEJ
-
Li Z, Wen J, Lin Y, Wang S, Xue P, Zhang Z, Zhou Y, Wang X, Sui L, Bi LJ, Zhang XE. 2011. A Sir2-like protein participates in mycobacterial NHEJ. PloS One 6:e20045.
-
(2011)
PloS One
, vol.6
-
-
Li, Z.1
Wen, J.2
Lin, Y.3
Wang, S.4
Xue, P.5
Zhang, Z.6
Zhou, Y.7
Wang, X.8
Sui, L.9
Bi, L.J.10
Zhang, X.E.11
-
53
-
-
0030000946
-
Genetic requirements for the single-strand annealing pathway of double-strand break repair in Saccharomyces cerevisiae
-
Ivanov EL, Sugawara N, Fishman-Lobell J, Haber JE. 1996. Genetic requirements for the single-strand annealing pathway of double-strand break repair in Saccharomyces cerevisiae. Genetics 142:693-704.
-
(1996)
Genetics
, vol.142
, pp. 693-704
-
-
Ivanov, E.L.1
Sugawara, N.2
Fishman-Lobell, J.3
Haber, J.E.4
-
54
-
-
84859342693
-
Comparative analysis of Mycobacterium tuberculosis pe and ppe genes reveals high sequence variation and an apparent absence of selective constraints
-
McEvoyCR, CloeteR, MullerB, SchurchAC, van Helden PD, Gagneux S, Warren RM, Gey van Pittius NC. 2012. Comparative analysis of Mycobacterium tuberculosis pe and ppe genes reveals high sequence variation and an apparent absence of selective constraints. PloS One 7:e30593.
-
(2012)
PloS One
, vol.7
-
-
McEvoy, C.R.1
Cloete, R.2
Muller, B.3
Schurch, A.C.4
van Helden, P.D.5
Gagneux, S.6
Warren, R.M.7
Gey van Pittius, N.C.8
-
55
-
-
70350499473
-
Evidence for a rapid rate of molecular evolution at the hypervariable and immunogenic Mycobacterium tuberculosis PPE38 gene region
-
McEvoy CR, van Helden PD, Warren RM, Gey van Pittius NC. 2009. Evidence for a rapid rate of molecular evolution at the hypervariable and immunogenic Mycobacterium tuberculosis PPE38 gene region. BMC Evol Biol 9:237.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 237
-
-
McEvoy, C.R.1
van Helden, P.D.2
Warren, R.M.3
Gey van Pittius, N.C.4
-
56
-
-
26944437440
-
Variation of the Mycobacterium tuberculosis PE_PGRS 33 gene among clinical isolates
-
Talarico S, Cave MD, Marrs CF, Foxman B, Zhang L, Yang Z. 2005. Variation of the Mycobacterium tuberculosis PE_PGRS 33 gene among clinical isolates. J Clin Microbiol 43:4954-4960.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 4954-4960
-
-
Talarico, S.1
Cave, M.D.2
Marrs, C.F.3
Foxman, B.4
Zhang, L.5
Yang, Z.6
-
57
-
-
45849108709
-
Mycobacterium tuberculosis PE_PGRS16 and PE_PGRS26 genetic polymorphism among clinical isolates
-
Talarico S, Zhang L, Marrs CF, Foxman B, Cave MD, Brennan MJ, Yang Z. 2008. Mycobacterium tuberculosis PE_PGRS16 and PE_PGRS26 genetic polymorphism among clinical isolates. Tuberculosis 88:283-294.
-
(2008)
Tuberculosis
, vol.88
, pp. 283-294
-
-
Talarico, S.1
Zhang, L.2
Marrs, C.F.3
Foxman, B.4
Cave, M.D.5
Brennan, M.J.6
Yang, Z.7
-
58
-
-
84870898400
-
Direct and inverted repeats elicit genetic instability by both exploiting and eluding DNA double-strand break repair systems in mycobacteria
-
Wojcik EA, Brzostek A, Bacolla A, Mackiewicz P, Vasquez KM, Korycka-Machala M, Jaworski A, Dziadek J. 2012. Direct and inverted repeats elicit genetic instability by both exploiting and eluding DNA double-strand break repair systems in mycobacteria. PloS One 7: e51064.
-
(2012)
PloS One
, vol.7
-
-
Wojcik, E.A.1
Brzostek, A.2
Bacolla, A.3
Mackiewicz, P.4
Vasquez, K.M.5
Korycka-Machala, M.6
Jaworski, A.7
Dziadek, J.8
-
59
-
-
0348017149
-
The proteasome of Mycobacterium tuberculosis is required for resistance to nitric oxide
-
Darwin KH, Ehrt S, Gutierrez-Ramos JC, Weich N, Nathan CF. 2003. The proteasome of Mycobacterium tuberculosis is required for resistance to nitric oxide. Science 302:1963-1966.
-
(2003)
Science
, vol.302
, pp. 1963-1966
-
-
Darwin, K.H.1
Ehrt, S.2
Gutierrez-Ramos, J.C.3
Weich, N.4
Nathan, C.F.5
-
60
-
-
22344447816
-
Role for nucleotide excision repair in virulence of Mycobacterium tuberculosis
-
Darwin KH, Nathan CF. 2005. Role for nucleotide excision repair in virulence of Mycobacterium tuberculosis. Infect Immun 73:4581-4587.
-
(2005)
Infect Immun
, vol.73
, pp. 4581-4587
-
-
Darwin, K.H.1
Nathan, C.F.2
-
61
-
-
84864012560
-
Important role for Mycobacterium tuberculosis UvrD1 in pathogenesis and persistence apart from its function in nucleotide excision repair
-
Houghton J, Townsend C, Williams AR, Rodgers A, Rand L, Walker KB, Bottger EC, Springer B, Davis EO. 2012. Important role for Mycobacterium tuberculosis UvrD1 in pathogenesis and persistence apart from its function in nucleotide excision repair. J Bacteriol 194:2916-2923.
-
(2012)
J Bacteriol
, vol.194
, pp. 2916-2923
-
-
Houghton, J.1
Townsend, C.2
Williams, A.R.3
Rodgers, A.4
Rand, L.5
Walker, K.B.6
Bottger, E.C.7
Springer, B.8
Davis, E.O.9
-
62
-
-
51549091830
-
Domain requirements for DNA unwinding by mycobacterial UvrD2, an essential DNA helicase
-
Sinha KM, Stephanou NC, Unciuleac MC, Glickman MS, Shuman S. 2008. Domain requirements for DNA unwinding by mycobacterial UvrD2, an essential DNA helicase. Biochemistry 47:9355-9364.
-
(2008)
Biochemistry
, vol.47
, pp. 9355-9364
-
-
Sinha, K.M.1
Stephanou, N.C.2
Unciuleac, M.C.3
Glickman, M.S.4
Shuman, S.5
-
63
-
-
80052315960
-
UvrD2 is essential in Mycobacterium tuberculosis, but its helicase activity is not required
-
Williams A, Guthlein C, Beresford N, Bottger EC, Springer B, Davis EO. 2011. UvrD2 is essential in Mycobacterium tuberculosis, but its helicase activity is not required. J Bacteriol 193:4487-4494.
-
(2011)
J Bacteriol
, vol.193
, pp. 4487-4494
-
-
Williams, A.1
Guthlein, C.2
Beresford, N.3
Bottger, E.C.4
Springer, B.5
Davis, E.O.6
-
64
-
-
0037453719
-
DnaE2 polymerase contributes to in vivo survival and the emergence of drug resistance in Mycobacterium tuberculosis
-
Boshoff HI, Reed MB, Barry CE, 3rd, Mizrahi V. 2003. DnaE2 polymerase contributes to in vivo survival and the emergence of drug resistance in Mycobacterium tuberculosis. Cell 113:183-193.
-
(2003)
Cell
, vol.113
, pp. 183-193
-
-
Boshoff, H.I.1
Reed, M.B.2
Barry, C.E.3
Mizrahi, V.4
-
65
-
-
0035002098
-
Mycobacterium bovis BCG recA deletion mutant shows increased susceptibility to DNA-damaging agents but wild-type survival in a mouse infection model
-
Sander P, Papavinasasundaram KG, Dick T, Stavropoulos E, Ellrott K, Springer B, Colston MJ, Bottger EC. 2001. Mycobacterium bovis BCG recA deletion mutant shows increased susceptibility to DNA-damaging agents but wild-type survival in a mouse infection model. Infect Immun 69:3562-3568.
-
(2001)
Infect Immun
, vol.69
, pp. 3562-3568
-
-
Sander, P.1
Papavinasasundaram, K.G.2
Dick, T.3
Stavropoulos, E.4
Ellrott, K.5
Springer, B.6
Colston, M.J.7
Bottger, E.C.8
-
66
-
-
84856301870
-
Mouse model of necrotic tuberculosis granulomas develops hypoxic lesions
-
Harper J, Skerry C, Davis SL, Tasneen R, Weir M, Kramnik I, Bishai WR, Pomper MG, Nuermberger EL, Jain SK. 2012. Mouse model of necrotic tuberculosis granulomas develops hypoxic lesions. J Infect Dis 205:595-602.
-
(2012)
J Infect Dis
, vol.205
, pp. 595-602
-
-
Harper, J.1
Skerry, C.2
Davis, S.L.3
Tasneen, R.4
Weir, M.5
Kramnik, I.6
Bishai, W.R.7
Pomper, M.G.8
Nuermberger, E.L.9
Jain, S.K.10
-
67
-
-
59649119960
-
A replication clock for Mycobacterium tuberculosis
-
Gill WP, Harik NS, Whiddon MR, Liao RP, Mittler JE, Sherman DR. 2009. A replication clock for Mycobacterium tuberculosis. Nat Med 15: 211-214.
-
(2009)
Nat Med
, vol.15
, pp. 211-214
-
-
Gill, W.P.1
Harik, N.S.2
Whiddon, M.R.3
Liao, R.P.4
Mittler, J.E.5
Sherman, D.R.6
-
68
-
-
77950673080
-
Role of the DinB homologs Rv1537 and Rv3056 in Mycobacterium tuberculosis
-
Kana BD, Abrahams GL, Sung N, Warner DF, Gordhan BG, Machowski EE, Tsenova L, Sacchettini JC, Stoker NG, Kaplan G, Mizrahi V. 2010. Role of the DinB homologs Rv1537 and Rv3056 in Mycobacterium tuberculosis. J Bacteriol 192:2220-2227.
-
(2010)
J Bacteriol
, vol.192
, pp. 2220-2227
-
-
Kana, B.D.1
Abrahams, G.L.2
Sung, N.3
Warner, D.F.4
Gordhan, B.G.5
Machowski, E.E.6
Tsenova, L.7
Sacchettini, J.C.8
Stoker, N.G.9
Kaplan, G.10
Mizrahi, V.11
-
69
-
-
79955460244
-
Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection
-
Ford CB, Lin PL, Chase MR, Shah RR, Iartchouk O, Galagan J, Mohaideen N, Ioerger TR, Sacchettini JC, Lipsitch M, Flynn JL, Fortune SM. 2011. Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection. Nat Genet 43: 482-486.
-
(2011)
Nat Genet
, vol.43
, pp. 482-486
-
-
Ford, C.B.1
Lin, P.L.2
Chase, M.R.3
Shah, R.R.4
Iartchouk, O.5
Galagan, J.6
Mohaideen, N.7
Ioerger, T.R.8
Sacchettini, J.C.9
Lipsitch, M.10
Flynn, J.L.11
Fortune, S.M.12
|