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Volumn 79, Issue 2, 2011, Pages 316-330

Mycobacteria exploit three genetically distinct DNA double-strand break repair pathways

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; EXODEOXYRIBONUCLEASE V; HELICASE; NUCLEASE; PROTEIN ADNAB; RECA PROTEIN; UNCLASSIFIED DRUG;

EID: 78651083451     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2010.07463.x     Document Type: Article
Times cited : (88)

References (41)
  • 1
    • 47749093168 scopus 로고    scopus 로고
    • Helicobacter pylori AddAB helicase-nuclease and RecA promote recombination-related DNA repair and survival during stomach colonization
    • Amundsen, S.K., Fero, J., Hansen, L.M., Cromie, G.A., Solnick, J.V., Smith, G.R., and Salama, N.R. (2008) Helicobacter pylori AddAB helicase-nuclease and RecA promote recombination-related DNA repair and survival during stomach colonization. Mol Microbiol 69: 994-1007.
    • (2008) Mol Microbiol , vol.69 , pp. 994-1007
    • Amundsen, S.K.1    Fero, J.2    Hansen, L.M.3    Cromie, G.A.4    Solnick, J.V.5    Smith, G.R.6    Salama, N.R.7
  • 2
    • 39449129496 scopus 로고    scopus 로고
    • The pathways and outcomes of mycobacterial NHEJ depend on the structure of the broken DNA ends
    • Aniukwu, J., Glickman, M.S., and Shuman, S. (2008) The pathways and outcomes of mycobacterial NHEJ depend on the structure of the broken DNA ends. Genes Dev 22: 512-527.
    • (2008) Genes Dev , vol.22 , pp. 512-527
    • Aniukwu, J.1    Glickman, M.S.2    Shuman, S.3
  • 3
    • 0027943565 scopus 로고
    • Specific cleavage of model recombination and repair intermediates by the yeast Rad1-Rad10 DNA endonuclease
    • Bardwell, A.J., Bardwell, L., Tomkinson, A.E., and Friedberg, E.C. (1994) Specific cleavage of model recombination and repair intermediates by the yeast Rad1-Rad10 DNA endonuclease. Science 265: 2082-2085.
    • (1994) Science , vol.265 , pp. 2082-2085
    • Bardwell, A.J.1    Bardwell, L.2    Tomkinson, A.E.3    Friedberg, E.C.4
  • 5
    • 0027416848 scopus 로고
    • Recombination-deficient mutants of Salmonella typhimurium are avirulent and sensitive to the oxidative burst of macrophages
    • Buchmeier, N.A., Lipps, C.J., So, M.Y., and Heffron, F. (1993) Recombination-deficient mutants of Salmonella typhimurium are avirulent and sensitive to the oxidative burst of macrophages. Mol Microbiol 7: 933-936.
    • (1993) Mol Microbiol , vol.7 , pp. 933-936
    • Buchmeier, N.A.1    Lipps, C.J.2    So, M.Y.3    Heffron, F.4
  • 6
    • 0034967389 scopus 로고    scopus 로고
    • Evidence for two mechanisms of palindrome-stimulated deletion in Escherichia coli: single-strand annealing and replication slipped mispairing
    • Bzymek, M., and Lovett, S.T. (2001a) Evidence for two mechanisms of palindrome-stimulated deletion in Escherichia coli: single-strand annealing and replication slipped mispairing. Genetics 158: 527-540.
    • (2001) Genetics , vol.158 , pp. 527-540
    • Bzymek, M.1    Lovett, S.T.2
  • 7
    • 0035902443 scopus 로고    scopus 로고
    • Instability of repetitive DNA sequences: the role of replication in multiple mechanisms
    • Bzymek, M., and Lovett, S.T. (2001b) Instability of repetitive DNA sequences: the role of replication in multiple mechanisms. Proc Natl Acad Sci USA 98: 8319-8325.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 8319-8325
    • Bzymek, M.1    Lovett, S.T.2
  • 8
    • 33745182540 scopus 로고    scopus 로고
    • The DNA polymerase lambda is required for the repair of non-compatible DNA double strand breaks by NHEJ in mammalian cells
    • Capp, J.P., Boudsocq, F., Bertrand, P., Laroche-Clary, A., Pourquier, P., Lopez, B.S., et al. (2006) The DNA polymerase lambda is required for the repair of non-compatible DNA double strand breaks by NHEJ in mammalian cells. Nucleic Acids Res 34: 2998-3007.
    • (2006) Nucleic Acids Res , vol.34 , pp. 2998-3007
    • Capp, J.P.1    Boudsocq, F.2    Bertrand, P.3    Laroche-Clary, A.4    Pourquier, P.5    Lopez, B.S.6
  • 9
    • 34547135486 scopus 로고    scopus 로고
    • Involvement of DNA polymerase mu in the repair of a specific subset of DNA double-strand breaks in mammalian cells
    • Capp, J.P., Boudsocq, F., Besnard, A.G., Lopez, B.S., Cazaux, C., Hoffmann, J.S., and Canitrot, Y. (2007) Involvement of DNA polymerase mu in the repair of a specific subset of DNA double-strand breaks in mammalian cells. Nucleic Acids Res 35: 3551-3560.
    • (2007) Nucleic Acids Res , vol.35 , pp. 3551-3560
    • Capp, J.P.1    Boudsocq, F.2    Besnard, A.G.3    Lopez, B.S.4    Cazaux, C.5    Hoffmann, J.S.6    Canitrot, Y.7
  • 10
    • 0036228220 scopus 로고    scopus 로고
    • A novel family of regulated helicases/nucleases from Gram-positive bacteria: insights into the initiation of DNA recombination
    • Chedin, F., and Kowalczykowski, S.C. (2002) A novel family of regulated helicases/nucleases from Gram-positive bacteria: insights into the initiation of DNA recombination. Mol Microbiol 43: 823-834.
    • (2002) Mol Microbiol , vol.43 , pp. 823-834
    • Chedin, F.1    Kowalczykowski, S.C.2
  • 11
    • 33745838577 scopus 로고    scopus 로고
    • The AddAB helicase/nuclease forms a stable complex with its cognate chi sequence during translocation
    • Chedin, F., Handa, N., Dillingham, M.S., and Kowalczykowski, S.C. (2006) The AddAB helicase/nuclease forms a stable complex with its cognate chi sequence during translocation. J Biol Chem 281: 18610-18617.
    • (2006) J Biol Chem , vol.281 , pp. 18610-18617
    • Chedin, F.1    Handa, N.2    Dillingham, M.S.3    Kowalczykowski, S.C.4
  • 12
    • 0028808098 scopus 로고
    • Role of the Rad1 and Rad10 proteins in nucleotide excision repair and recombination
    • Davies, A.A., Friedberg, E.C., Tomkinson, A.E., Wood, R.D., and West, S.C. (1995) Role of the Rad1 and Rad10 proteins in nucleotide excision repair and recombination. J Biol Chem 270: 24638-24641.
    • (1995) J Biol Chem , vol.270 , pp. 24638-24641
    • Davies, A.A.1    Friedberg, E.C.2    Tomkinson, A.E.3    Wood, R.D.4    West, S.C.5
  • 13
    • 44349155971 scopus 로고    scopus 로고
    • End-bridging is required for pol mu to efficiently promote repair of noncomplementary ends by nonhomologous end joining
    • Davis, B.J., Havener, J.M., and Ramsden, D.A. (2008) End-bridging is required for pol mu to efficiently promote repair of noncomplementary ends by nonhomologous end joining. Nucleic Acids Res 36: 3085-3094.
    • (2008) Nucleic Acids Res , vol.36 , pp. 3085-3094
    • Davis, B.J.1    Havener, J.M.2    Ramsden, D.A.3
  • 14
    • 57349157777 scopus 로고    scopus 로고
    • RecBCD enzyme and the repair of double-stranded DNA breaks
    • Table of Contents.
    • Dillingham, M.S., and Kowalczykowski, S.C. (2008) RecBCD enzyme and the repair of double-stranded DNA breaks. Microbiol Mol Biol Rev 72: 642-671, Table of Contents.
    • (2008) Microbiol Mol Biol Rev , vol.72 , pp. 642-671
    • Dillingham, M.S.1    Kowalczykowski, S.C.2
  • 15
    • 15244361942 scopus 로고    scopus 로고
    • Chromosomal translocation mechanisms at intronic alu elements in mammalian cells
    • Elliott, B., Richardson, C., and Jasin, M. (2005) Chromosomal translocation mechanisms at intronic alu elements in mammalian cells. Mol Cell 17: 885-894.
    • (2005) Mol Cell , vol.17 , pp. 885-894
    • Elliott, B.1    Richardson, C.2    Jasin, M.3
  • 17
    • 0028972283 scopus 로고
    • The biosynthesis of cyclopropanated mycolic acids in Mycobacterium tuberculosis. Identification and functional analysis of CMAS-2
    • George, K.M., Yuan, Y., Sherman, D.R., and Barry, C.E., 3rd (1995) The biosynthesis of cyclopropanated mycolic acids in Mycobacterium tuberculosis. Identification and functional analysis of CMAS-2. J Biol Chem 270: 27292-27298.
    • (1995) J Biol Chem , vol.270 , pp. 27292-27298
    • George, K.M.1    Yuan, Y.2    Sherman, D.R.3    Barry 3rd, C.E.4
  • 18
    • 0033634971 scopus 로고    scopus 로고
    • A novel mycolic acid cyclopropane synthetase is required for cording, persistence, and virulence of Mycobacterium tuberculosis
    • Glickman, M.S., Cox, J.S., and Jacobs, W.R., Jr (2000) A novel mycolic acid cyclopropane synthetase is required for cording, persistence, and virulence of Mycobacterium tuberculosis. Mol Cell 5: 717-727.
    • (2000) Mol Cell , vol.5 , pp. 717-727
    • Glickman, M.S.1    Cox, J.S.2    Jacobs Jr, W.R.3
  • 19
    • 2442717521 scopus 로고    scopus 로고
    • Biochemical and genetic analysis of the four DNA ligases of mycobacteria
    • Gong, C., Martins, A., Bongiorno, P., Glickman, M., and Shuman, S. (2004) Biochemical and genetic analysis of the four DNA ligases of mycobacteria. J Biol Chem 279: 20594-20606.
    • (2004) J Biol Chem , vol.279 , pp. 20594-20606
    • Gong, C.1    Martins, A.2    Bongiorno, P.3    Glickman, M.4    Shuman, S.5
  • 20
    • 18744380665 scopus 로고    scopus 로고
    • Mechanism of nonhomologous end-joining in mycobacteria: a low-fidelity repair system driven by Ku, ligase D and ligase C
    • Gong, C., Bongiorno, P., Martins, A., Stephanou, N.C., Zhu, H., Shuman, S., and Glickman, M.S. (2005) Mechanism of nonhomologous end-joining in mycobacteria: a low-fidelity repair system driven by Ku, ligase D and ligase C. Nat Struct Mol Biol 12: 304-312.
    • (2005) Nat Struct Mol Biol , vol.12 , pp. 304-312
    • Gong, C.1    Bongiorno, P.2    Martins, A.3    Stephanou, N.C.4    Zhu, H.5    Shuman, S.6    Glickman, M.S.7
  • 21
    • 0029811915 scopus 로고    scopus 로고
    • The C terminus of the AddA subunit of the Bacillus subtilis ATP-dependent DNase is required for the ATP-dependent exonuclease activity but not for the helicase activity
    • Haijema, B.J., Venema, G., and Kooistra, J. (1996) The C terminus of the AddA subunit of the Bacillus subtilis ATP-dependent DNase is required for the ATP-dependent exonuclease activity but not for the helicase activity. J Bacteriol 178: 5086-5091.
    • (1996) J Bacteriol , vol.178 , pp. 5086-5091
    • Haijema, B.J.1    Venema, G.2    Kooistra, J.3
  • 22
    • 0028927573 scopus 로고
    • RAD1 and RAD10, but not other excision repair genes, are required for double-strand break-induced recombination in Saccharomyces cerevisiae
    • Ivanov, E.L., and Haber, J.E. (1995) RAD1 and RAD10, but not other excision repair genes, are required for double-strand break-induced recombination in Saccharomyces cerevisiae. Mol Cell Biol 15: 2245-2251.
    • (1995) Mol Cell Biol , vol.15 , pp. 2245-2251
    • Ivanov, E.L.1    Haber, J.E.2
  • 23
    • 0030000946 scopus 로고    scopus 로고
    • Genetic requirements for the single-strand annealing pathway of double-strand break repair in Saccharomyces cerevisiae
    • Ivanov, E.L., Sugawara, N., Fishman-Lobell, J., and Haber, J.E. (1996) Genetic requirements for the single-strand annealing pathway of double-strand break repair in Saccharomyces cerevisiae. Genetics 142: 693-704.
    • (1996) Genetics , vol.142 , pp. 693-704
    • Ivanov, E.L.1    Sugawara, N.2    Fishman-Lobell, J.3    Haber, J.E.4
  • 25
    • 0027527775 scopus 로고
    • Mycobacteriophage L5 integrase-mediated site-specific integration in vitro
    • Lee, M.H., and Hatfull, G.F. (1993) Mycobacteriophage L5 integrase-mediated site-specific integration in vitro. J Bacteriol 175: 6836-6841.
    • (1993) J Bacteriol , vol.175 , pp. 6836-6841
    • Lee, M.H.1    Hatfull, G.F.2
  • 26
    • 77953229115 scopus 로고    scopus 로고
    • The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway
    • Lieber, M.R. (2010) The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu Rev Biochem 79: 181-211.
    • (2010) Annu Rev Biochem , vol.79 , pp. 181-211
    • Lieber, M.R.1
  • 27
    • 9744241712 scopus 로고    scopus 로고
    • A biochemically defined system for mammalian nonhomologous DNA end joining
    • Ma, Y., Lu, H., Tippin, B., Goodman, M.F., Shimazaki, N., Koiwai, O., et al. (2004) A biochemically defined system for mammalian nonhomologous DNA end joining. Mol Cell 16: 701-713.
    • (2004) Mol Cell , vol.16 , pp. 701-713
    • Ma, Y.1    Lu, H.2    Tippin, B.3    Goodman, M.F.4    Shimazaki, N.5    Koiwai, O.6
  • 28
    • 53649104599 scopus 로고    scopus 로고
    • Sae2, Exo1 and Sgs1 collaborate in DNA double-strand break processing
    • Mimitou, E.P., and Symington, L.S. (2008) Sae2, Exo1 and Sgs1 collaborate in DNA double-strand break processing. Nature 455: 770-774.
    • (2008) Nature , vol.455 , pp. 770-774
    • Mimitou, E.P.1    Symington, L.S.2
  • 29
    • 0029976325 scopus 로고    scopus 로고
    • Cell cycle and genetic requirements of two pathways of nonhomologous end-joining repair of double-strand breaks in Saccharomyces cerevisiae
    • Moore, J.K., and Haber, J.E. (1996) Cell cycle and genetic requirements of two pathways of nonhomologous end-joining repair of double-strand breaks in Saccharomyces cerevisiae. Mol Cell Biol 16: 2164-2173.
    • (1996) Mol Cell Biol , vol.16 , pp. 2164-2173
    • Moore, J.K.1    Haber, J.E.2
  • 30
    • 23044453811 scopus 로고    scopus 로고
    • A gradient of template dependence defines distinct biological roles for family X polymerases in nonhomologous end joining
    • Nick McElhinny, S.A., Havener, J.M., Garcia-Diaz, M., Juarez, R., Bebenek, K., Kee, B.L., et al. (2005) A gradient of template dependence defines distinct biological roles for family X polymerases in nonhomologous end joining. Mol Cell 19: 357-366.
    • (2005) Mol Cell , vol.19 , pp. 357-366
    • Nick McElhinny, S.A.1    Havener, J.M.2    Garcia-Diaz, M.3    Juarez, R.4    Bebenek, K.5    Kee, B.L.6
  • 31
    • 0348110537 scopus 로고    scopus 로고
    • Efficient switching of mycobacteriophage L5-based integrating plasmids in Mycobacterium tuberculosis
    • Pashley, C.A., and Parish, T. (2003) Efficient switching of mycobacteriophage L5-based integrating plasmids in Mycobacterium tuberculosis. FEMS Microbiol Lett 229: 211-215.
    • (2003) FEMS Microbiol Lett , vol.229 , pp. 211-215
    • Pashley, C.A.1    Parish, T.2
  • 32
    • 0031566957 scopus 로고    scopus 로고
    • Characterization of the mycobacteriophage L5 attachment site, attP
    • Pena, C.E., Lee, M.H., Pedulla, M.L., and Hatfull, G.F. (1997) Characterization of the mycobacteriophage L5 attachment site, attP. J Mol Biol 266: 76-92.
    • (1997) J Mol Biol , vol.266 , pp. 76-92
    • Pena, C.E.1    Lee, M.H.2    Pedulla, M.L.3    Hatfull, G.F.4
  • 34
    • 0035002098 scopus 로고    scopus 로고
    • Mycobacterium bovis BCG recA deletion mutant shows increased susceptibility to DNA-damaging agents but wild-type survival in a mouse infection model
    • Sander, P., Papavinasasundaram, K.G., Dick, T., Stavropoulos, E., Ellrott, K., Springer, B., et al. (2001) Mycobacterium bovis BCG recA deletion mutant shows increased susceptibility to DNA-damaging agents but wild-type survival in a mouse infection model. Infect Immun 69: 3562-3568.
    • (2001) Infect Immun , vol.69 , pp. 3562-3568
    • Sander, P.1    Papavinasasundaram, K.G.2    Dick, T.3    Stavropoulos, E.4    Ellrott, K.5    Springer, B.6
  • 35
    • 35348890199 scopus 로고    scopus 로고
    • Bacterial DNA repair by non-homologous end joining
    • Shuman, S., and Glickman, M.S. (2007) Bacterial DNA repair by non-homologous end joining. Nat Rev Microbiol 5: 852-861.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 852-861
    • Shuman, S.1    Glickman, M.S.2
  • 36
    • 67149121060 scopus 로고    scopus 로고
    • AdnAB: a new DSB-resecting motor-nuclease from mycobacteria
    • Sinha, K.M., Unciuleac, M.C., Glickman, M.S., and Shuman, S. (2009) AdnAB: a new DSB-resecting motor-nuclease from mycobacteria. Genes Dev 23: 1423-1437.
    • (2009) Genes Dev , vol.23 , pp. 1423-1437
    • Sinha, K.M.1    Unciuleac, M.C.2    Glickman, M.S.3    Shuman, S.4
  • 37
    • 0025081151 scopus 로고
    • Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis
    • Snapper, S.B., Melton, R.E., Mustafa, S., Kieser, T., and Jacobs, W.R., Jr (1990) Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis. Mol Microbiol 4: 1911-1919.
    • (1990) Mol Microbiol , vol.4 , pp. 1911-1919
    • Snapper, S.B.1    Melton, R.E.2    Mustafa, S.3    Kieser, T.4    Jacobs Jr, W.R.5
  • 38
    • 0033570011 scopus 로고    scopus 로고
    • Mutational analysis of Escherichia coli DNA ligase identifies amino acids required for nick-ligation in vitro and for in vivo complementation of the growth of yeast cells deleted for CDC9 and LIG4
    • Sriskanda, V., Schwer, B., Ho, C.K., and Shuman, S. (1999) Mutational analysis of Escherichia coli DNA ligase identifies amino acids required for nick-ligation in vitro and for in vivo complementation of the growth of yeast cells deleted for CDC9 and LIG4. Nucleic Acids Res 27: 3953-3963.
    • (1999) Nucleic Acids Res , vol.27 , pp. 3953-3963
    • Sriskanda, V.1    Schwer, B.2    Ho, C.K.3    Shuman, S.4
  • 39
    • 34447508310 scopus 로고    scopus 로고
    • Mycobacterial nonhomologous end joining mediates mutagenic repair of chromosomal double-strand DNA breaks
    • Stephanou, N.C., Gao, F., Bongiorno, P., Ehrt, S., Schnappinger, D., Shuman, S., and Glickman, M.S. (2007) Mycobacterial nonhomologous end joining mediates mutagenic repair of chromosomal double-strand DNA breaks. J Bacteriol 189: 5237-5246.
    • (2007) J Bacteriol , vol.189 , pp. 5237-5246
    • Stephanou, N.C.1    Gao, F.2    Bongiorno, P.3    Ehrt, S.4    Schnappinger, D.5    Shuman, S.6    Glickman, M.S.7
  • 40
    • 77951187826 scopus 로고    scopus 로고
    • Gap filling activities of Pseudomonas DNA ligase D (LigD) polymerase and functional interactions of LigD with the DNA end-binding Ku protein
    • Zhu, H., and Shuman, S. (2010) Gap filling activities of Pseudomonas DNA ligase D (LigD) polymerase and functional interactions of LigD with the DNA end-binding Ku protein. J Biol Chem 285: 4815-4825.
    • (2010) J Biol Chem , vol.285 , pp. 4815-4825
    • Zhu, H.1    Shuman, S.2
  • 41
    • 51549095956 scopus 로고    scopus 로고
    • Sgs1 helicase and two nucleases Dna2 and Exo1 resect DNA double-strand break ends
    • Zhu, Z., Chung, W.H., Shim, E.Y., Lee, S.E., and Ira, G. (2008) Sgs1 helicase and two nucleases Dna2 and Exo1 resect DNA double-strand break ends. Cell 134: 981-994.
    • (2008) Cell , vol.134 , pp. 981-994
    • Zhu, Z.1    Chung, W.H.2    Shim, E.Y.3    Lee, S.E.4    Ira, G.5


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