-
1
-
-
47749093168
-
Helicobacter pylori AddAB helicase-nuclease and RecA promote recombination-related DNA repair and survival during stomach colonization
-
Amundsen, S.K., Fero, J., Hansen, L.M., Cromie, G.A., Solnick, J.V., Smith, G.R., and Salama, N.R. (2008) Helicobacter pylori AddAB helicase-nuclease and RecA promote recombination-related DNA repair and survival during stomach colonization. Mol Microbiol 69: 994-1007.
-
(2008)
Mol Microbiol
, vol.69
, pp. 994-1007
-
-
Amundsen, S.K.1
Fero, J.2
Hansen, L.M.3
Cromie, G.A.4
Solnick, J.V.5
Smith, G.R.6
Salama, N.R.7
-
2
-
-
39449129496
-
The pathways and outcomes of mycobacterial NHEJ depend on the structure of the broken DNA ends
-
Aniukwu, J., Glickman, M.S., and Shuman, S. (2008) The pathways and outcomes of mycobacterial NHEJ depend on the structure of the broken DNA ends. Genes Dev 22: 512-527.
-
(2008)
Genes Dev
, vol.22
, pp. 512-527
-
-
Aniukwu, J.1
Glickman, M.S.2
Shuman, S.3
-
3
-
-
0027943565
-
Specific cleavage of model recombination and repair intermediates by the yeast Rad1-Rad10 DNA endonuclease
-
Bardwell, A.J., Bardwell, L., Tomkinson, A.E., and Friedberg, E.C. (1994) Specific cleavage of model recombination and repair intermediates by the yeast Rad1-Rad10 DNA endonuclease. Science 265: 2082-2085.
-
(1994)
Science
, vol.265
, pp. 2082-2085
-
-
Bardwell, A.J.1
Bardwell, L.2
Tomkinson, A.E.3
Friedberg, E.C.4
-
4
-
-
35349028355
-
Structure of a NHEJ polymerase-mediated DNA synaptic complex
-
Brissett, N.C., Pitcher, R.S., Juarez, R., Picher, A.J., Green, A.J., Dafforn, T.R., et al. (2007) Structure of a NHEJ polymerase-mediated DNA synaptic complex. Science 318: 456-459.
-
(2007)
Science
, vol.318
, pp. 456-459
-
-
Brissett, N.C.1
Pitcher, R.S.2
Juarez, R.3
Picher, A.J.4
Green, A.J.5
Dafforn, T.R.6
-
5
-
-
0027416848
-
Recombination-deficient mutants of Salmonella typhimurium are avirulent and sensitive to the oxidative burst of macrophages
-
Buchmeier, N.A., Lipps, C.J., So, M.Y., and Heffron, F. (1993) Recombination-deficient mutants of Salmonella typhimurium are avirulent and sensitive to the oxidative burst of macrophages. Mol Microbiol 7: 933-936.
-
(1993)
Mol Microbiol
, vol.7
, pp. 933-936
-
-
Buchmeier, N.A.1
Lipps, C.J.2
So, M.Y.3
Heffron, F.4
-
6
-
-
0034967389
-
Evidence for two mechanisms of palindrome-stimulated deletion in Escherichia coli: single-strand annealing and replication slipped mispairing
-
Bzymek, M., and Lovett, S.T. (2001a) Evidence for two mechanisms of palindrome-stimulated deletion in Escherichia coli: single-strand annealing and replication slipped mispairing. Genetics 158: 527-540.
-
(2001)
Genetics
, vol.158
, pp. 527-540
-
-
Bzymek, M.1
Lovett, S.T.2
-
7
-
-
0035902443
-
Instability of repetitive DNA sequences: the role of replication in multiple mechanisms
-
Bzymek, M., and Lovett, S.T. (2001b) Instability of repetitive DNA sequences: the role of replication in multiple mechanisms. Proc Natl Acad Sci USA 98: 8319-8325.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 8319-8325
-
-
Bzymek, M.1
Lovett, S.T.2
-
8
-
-
33745182540
-
The DNA polymerase lambda is required for the repair of non-compatible DNA double strand breaks by NHEJ in mammalian cells
-
Capp, J.P., Boudsocq, F., Bertrand, P., Laroche-Clary, A., Pourquier, P., Lopez, B.S., et al. (2006) The DNA polymerase lambda is required for the repair of non-compatible DNA double strand breaks by NHEJ in mammalian cells. Nucleic Acids Res 34: 2998-3007.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 2998-3007
-
-
Capp, J.P.1
Boudsocq, F.2
Bertrand, P.3
Laroche-Clary, A.4
Pourquier, P.5
Lopez, B.S.6
-
9
-
-
34547135486
-
Involvement of DNA polymerase mu in the repair of a specific subset of DNA double-strand breaks in mammalian cells
-
Capp, J.P., Boudsocq, F., Besnard, A.G., Lopez, B.S., Cazaux, C., Hoffmann, J.S., and Canitrot, Y. (2007) Involvement of DNA polymerase mu in the repair of a specific subset of DNA double-strand breaks in mammalian cells. Nucleic Acids Res 35: 3551-3560.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3551-3560
-
-
Capp, J.P.1
Boudsocq, F.2
Besnard, A.G.3
Lopez, B.S.4
Cazaux, C.5
Hoffmann, J.S.6
Canitrot, Y.7
-
10
-
-
0036228220
-
A novel family of regulated helicases/nucleases from Gram-positive bacteria: insights into the initiation of DNA recombination
-
Chedin, F., and Kowalczykowski, S.C. (2002) A novel family of regulated helicases/nucleases from Gram-positive bacteria: insights into the initiation of DNA recombination. Mol Microbiol 43: 823-834.
-
(2002)
Mol Microbiol
, vol.43
, pp. 823-834
-
-
Chedin, F.1
Kowalczykowski, S.C.2
-
11
-
-
33745838577
-
The AddAB helicase/nuclease forms a stable complex with its cognate chi sequence during translocation
-
Chedin, F., Handa, N., Dillingham, M.S., and Kowalczykowski, S.C. (2006) The AddAB helicase/nuclease forms a stable complex with its cognate chi sequence during translocation. J Biol Chem 281: 18610-18617.
-
(2006)
J Biol Chem
, vol.281
, pp. 18610-18617
-
-
Chedin, F.1
Handa, N.2
Dillingham, M.S.3
Kowalczykowski, S.C.4
-
12
-
-
0028808098
-
Role of the Rad1 and Rad10 proteins in nucleotide excision repair and recombination
-
Davies, A.A., Friedberg, E.C., Tomkinson, A.E., Wood, R.D., and West, S.C. (1995) Role of the Rad1 and Rad10 proteins in nucleotide excision repair and recombination. J Biol Chem 270: 24638-24641.
-
(1995)
J Biol Chem
, vol.270
, pp. 24638-24641
-
-
Davies, A.A.1
Friedberg, E.C.2
Tomkinson, A.E.3
Wood, R.D.4
West, S.C.5
-
13
-
-
44349155971
-
End-bridging is required for pol mu to efficiently promote repair of noncomplementary ends by nonhomologous end joining
-
Davis, B.J., Havener, J.M., and Ramsden, D.A. (2008) End-bridging is required for pol mu to efficiently promote repair of noncomplementary ends by nonhomologous end joining. Nucleic Acids Res 36: 3085-3094.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 3085-3094
-
-
Davis, B.J.1
Havener, J.M.2
Ramsden, D.A.3
-
14
-
-
57349157777
-
RecBCD enzyme and the repair of double-stranded DNA breaks
-
Table of Contents.
-
Dillingham, M.S., and Kowalczykowski, S.C. (2008) RecBCD enzyme and the repair of double-stranded DNA breaks. Microbiol Mol Biol Rev 72: 642-671, Table of Contents.
-
(2008)
Microbiol Mol Biol Rev
, vol.72
, pp. 642-671
-
-
Dillingham, M.S.1
Kowalczykowski, S.C.2
-
15
-
-
15244361942
-
Chromosomal translocation mechanisms at intronic alu elements in mammalian cells
-
Elliott, B., Richardson, C., and Jasin, M. (2005) Chromosomal translocation mechanisms at intronic alu elements in mammalian cells. Mol Cell 17: 885-894.
-
(2005)
Mol Cell
, vol.17
, pp. 885-894
-
-
Elliott, B.1
Richardson, C.2
Jasin, M.3
-
16
-
-
69949168508
-
Template strand scrunching during DNA gap repair synthesis by human polymerase lambda
-
Garcia-Diaz, M., Bebenek, K., Larrea, A.A., Havener, J.M., Perera, L., Krahn, J.M., et al. (2009) Template strand scrunching during DNA gap repair synthesis by human polymerase lambda. Nat Struct Mol Biol 16: 967-972.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 967-972
-
-
Garcia-Diaz, M.1
Bebenek, K.2
Larrea, A.A.3
Havener, J.M.4
Perera, L.5
Krahn, J.M.6
-
17
-
-
0028972283
-
The biosynthesis of cyclopropanated mycolic acids in Mycobacterium tuberculosis. Identification and functional analysis of CMAS-2
-
George, K.M., Yuan, Y., Sherman, D.R., and Barry, C.E., 3rd (1995) The biosynthesis of cyclopropanated mycolic acids in Mycobacterium tuberculosis. Identification and functional analysis of CMAS-2. J Biol Chem 270: 27292-27298.
-
(1995)
J Biol Chem
, vol.270
, pp. 27292-27298
-
-
George, K.M.1
Yuan, Y.2
Sherman, D.R.3
Barry 3rd, C.E.4
-
18
-
-
0033634971
-
A novel mycolic acid cyclopropane synthetase is required for cording, persistence, and virulence of Mycobacterium tuberculosis
-
Glickman, M.S., Cox, J.S., and Jacobs, W.R., Jr (2000) A novel mycolic acid cyclopropane synthetase is required for cording, persistence, and virulence of Mycobacterium tuberculosis. Mol Cell 5: 717-727.
-
(2000)
Mol Cell
, vol.5
, pp. 717-727
-
-
Glickman, M.S.1
Cox, J.S.2
Jacobs Jr, W.R.3
-
19
-
-
2442717521
-
Biochemical and genetic analysis of the four DNA ligases of mycobacteria
-
Gong, C., Martins, A., Bongiorno, P., Glickman, M., and Shuman, S. (2004) Biochemical and genetic analysis of the four DNA ligases of mycobacteria. J Biol Chem 279: 20594-20606.
-
(2004)
J Biol Chem
, vol.279
, pp. 20594-20606
-
-
Gong, C.1
Martins, A.2
Bongiorno, P.3
Glickman, M.4
Shuman, S.5
-
20
-
-
18744380665
-
Mechanism of nonhomologous end-joining in mycobacteria: a low-fidelity repair system driven by Ku, ligase D and ligase C
-
Gong, C., Bongiorno, P., Martins, A., Stephanou, N.C., Zhu, H., Shuman, S., and Glickman, M.S. (2005) Mechanism of nonhomologous end-joining in mycobacteria: a low-fidelity repair system driven by Ku, ligase D and ligase C. Nat Struct Mol Biol 12: 304-312.
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 304-312
-
-
Gong, C.1
Bongiorno, P.2
Martins, A.3
Stephanou, N.C.4
Zhu, H.5
Shuman, S.6
Glickman, M.S.7
-
21
-
-
0029811915
-
The C terminus of the AddA subunit of the Bacillus subtilis ATP-dependent DNase is required for the ATP-dependent exonuclease activity but not for the helicase activity
-
Haijema, B.J., Venema, G., and Kooistra, J. (1996) The C terminus of the AddA subunit of the Bacillus subtilis ATP-dependent DNase is required for the ATP-dependent exonuclease activity but not for the helicase activity. J Bacteriol 178: 5086-5091.
-
(1996)
J Bacteriol
, vol.178
, pp. 5086-5091
-
-
Haijema, B.J.1
Venema, G.2
Kooistra, J.3
-
22
-
-
0028927573
-
RAD1 and RAD10, but not other excision repair genes, are required for double-strand break-induced recombination in Saccharomyces cerevisiae
-
Ivanov, E.L., and Haber, J.E. (1995) RAD1 and RAD10, but not other excision repair genes, are required for double-strand break-induced recombination in Saccharomyces cerevisiae. Mol Cell Biol 15: 2245-2251.
-
(1995)
Mol Cell Biol
, vol.15
, pp. 2245-2251
-
-
Ivanov, E.L.1
Haber, J.E.2
-
23
-
-
0030000946
-
Genetic requirements for the single-strand annealing pathway of double-strand break repair in Saccharomyces cerevisiae
-
Ivanov, E.L., Sugawara, N., Fishman-Lobell, J., and Haber, J.E. (1996) Genetic requirements for the single-strand annealing pathway of double-strand break repair in Saccharomyces cerevisiae. Genetics 142: 693-704.
-
(1996)
Genetics
, vol.142
, pp. 693-704
-
-
Ivanov, E.L.1
Sugawara, N.2
Fishman-Lobell, J.3
Haber, J.E.4
-
24
-
-
33645463874
-
Distinct DNA repair pathways involving RecA and nonhomologous end joining in Mycobacterium smegmatis
-
Korycka-Machala, M., Brzostek, A., Rozalska, S., Rumijowska-Galewicz, A., Dziedzic, R., Bowater, R., and Dziadek, J. (2006) Distinct DNA repair pathways involving RecA and nonhomologous end joining in Mycobacterium smegmatis. FEMS Microbiol Lett 258: 83-91.
-
(2006)
FEMS Microbiol Lett
, vol.258
, pp. 83-91
-
-
Korycka-Machala, M.1
Brzostek, A.2
Rozalska, S.3
Rumijowska-Galewicz, A.4
Dziedzic, R.5
Bowater, R.6
Dziadek, J.7
-
25
-
-
0027527775
-
Mycobacteriophage L5 integrase-mediated site-specific integration in vitro
-
Lee, M.H., and Hatfull, G.F. (1993) Mycobacteriophage L5 integrase-mediated site-specific integration in vitro. J Bacteriol 175: 6836-6841.
-
(1993)
J Bacteriol
, vol.175
, pp. 6836-6841
-
-
Lee, M.H.1
Hatfull, G.F.2
-
26
-
-
77953229115
-
The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway
-
Lieber, M.R. (2010) The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu Rev Biochem 79: 181-211.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 181-211
-
-
Lieber, M.R.1
-
27
-
-
9744241712
-
A biochemically defined system for mammalian nonhomologous DNA end joining
-
Ma, Y., Lu, H., Tippin, B., Goodman, M.F., Shimazaki, N., Koiwai, O., et al. (2004) A biochemically defined system for mammalian nonhomologous DNA end joining. Mol Cell 16: 701-713.
-
(2004)
Mol Cell
, vol.16
, pp. 701-713
-
-
Ma, Y.1
Lu, H.2
Tippin, B.3
Goodman, M.F.4
Shimazaki, N.5
Koiwai, O.6
-
28
-
-
53649104599
-
Sae2, Exo1 and Sgs1 collaborate in DNA double-strand break processing
-
Mimitou, E.P., and Symington, L.S. (2008) Sae2, Exo1 and Sgs1 collaborate in DNA double-strand break processing. Nature 455: 770-774.
-
(2008)
Nature
, vol.455
, pp. 770-774
-
-
Mimitou, E.P.1
Symington, L.S.2
-
29
-
-
0029976325
-
Cell cycle and genetic requirements of two pathways of nonhomologous end-joining repair of double-strand breaks in Saccharomyces cerevisiae
-
Moore, J.K., and Haber, J.E. (1996) Cell cycle and genetic requirements of two pathways of nonhomologous end-joining repair of double-strand breaks in Saccharomyces cerevisiae. Mol Cell Biol 16: 2164-2173.
-
(1996)
Mol Cell Biol
, vol.16
, pp. 2164-2173
-
-
Moore, J.K.1
Haber, J.E.2
-
30
-
-
23044453811
-
A gradient of template dependence defines distinct biological roles for family X polymerases in nonhomologous end joining
-
Nick McElhinny, S.A., Havener, J.M., Garcia-Diaz, M., Juarez, R., Bebenek, K., Kee, B.L., et al. (2005) A gradient of template dependence defines distinct biological roles for family X polymerases in nonhomologous end joining. Mol Cell 19: 357-366.
-
(2005)
Mol Cell
, vol.19
, pp. 357-366
-
-
Nick McElhinny, S.A.1
Havener, J.M.2
Garcia-Diaz, M.3
Juarez, R.4
Bebenek, K.5
Kee, B.L.6
-
31
-
-
0348110537
-
Efficient switching of mycobacteriophage L5-based integrating plasmids in Mycobacterium tuberculosis
-
Pashley, C.A., and Parish, T. (2003) Efficient switching of mycobacteriophage L5-based integrating plasmids in Mycobacterium tuberculosis. FEMS Microbiol Lett 229: 211-215.
-
(2003)
FEMS Microbiol Lett
, vol.229
, pp. 211-215
-
-
Pashley, C.A.1
Parish, T.2
-
32
-
-
0031566957
-
Characterization of the mycobacteriophage L5 attachment site, attP
-
Pena, C.E., Lee, M.H., Pedulla, M.L., and Hatfull, G.F. (1997) Characterization of the mycobacteriophage L5 attachment site, attP. J Mol Biol 266: 76-92.
-
(1997)
J Mol Biol
, vol.266
, pp. 76-92
-
-
Pena, C.E.1
Lee, M.H.2
Pedulla, M.L.3
Hatfull, G.F.4
-
33
-
-
34547842081
-
NHEJ protects mycobacteria in stationary phase against the harmful effects of desiccation
-
Pitcher, R.S., Green, A.J., Brzostek, A., Korycka-Machala, M., Dziadek, J., and Doherty, A.J. (2007) NHEJ protects mycobacteria in stationary phase against the harmful effects of desiccation. DNA Repair (Amst) 6: 1271-1276.
-
(2007)
DNA Repair (Amst)
, vol.6
, pp. 1271-1276
-
-
Pitcher, R.S.1
Green, A.J.2
Brzostek, A.3
Korycka-Machala, M.4
Dziadek, J.5
Doherty, A.J.6
-
34
-
-
0035002098
-
Mycobacterium bovis BCG recA deletion mutant shows increased susceptibility to DNA-damaging agents but wild-type survival in a mouse infection model
-
Sander, P., Papavinasasundaram, K.G., Dick, T., Stavropoulos, E., Ellrott, K., Springer, B., et al. (2001) Mycobacterium bovis BCG recA deletion mutant shows increased susceptibility to DNA-damaging agents but wild-type survival in a mouse infection model. Infect Immun 69: 3562-3568.
-
(2001)
Infect Immun
, vol.69
, pp. 3562-3568
-
-
Sander, P.1
Papavinasasundaram, K.G.2
Dick, T.3
Stavropoulos, E.4
Ellrott, K.5
Springer, B.6
-
35
-
-
35348890199
-
Bacterial DNA repair by non-homologous end joining
-
Shuman, S., and Glickman, M.S. (2007) Bacterial DNA repair by non-homologous end joining. Nat Rev Microbiol 5: 852-861.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 852-861
-
-
Shuman, S.1
Glickman, M.S.2
-
36
-
-
67149121060
-
AdnAB: a new DSB-resecting motor-nuclease from mycobacteria
-
Sinha, K.M., Unciuleac, M.C., Glickman, M.S., and Shuman, S. (2009) AdnAB: a new DSB-resecting motor-nuclease from mycobacteria. Genes Dev 23: 1423-1437.
-
(2009)
Genes Dev
, vol.23
, pp. 1423-1437
-
-
Sinha, K.M.1
Unciuleac, M.C.2
Glickman, M.S.3
Shuman, S.4
-
37
-
-
0025081151
-
Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis
-
Snapper, S.B., Melton, R.E., Mustafa, S., Kieser, T., and Jacobs, W.R., Jr (1990) Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis. Mol Microbiol 4: 1911-1919.
-
(1990)
Mol Microbiol
, vol.4
, pp. 1911-1919
-
-
Snapper, S.B.1
Melton, R.E.2
Mustafa, S.3
Kieser, T.4
Jacobs Jr, W.R.5
-
38
-
-
0033570011
-
Mutational analysis of Escherichia coli DNA ligase identifies amino acids required for nick-ligation in vitro and for in vivo complementation of the growth of yeast cells deleted for CDC9 and LIG4
-
Sriskanda, V., Schwer, B., Ho, C.K., and Shuman, S. (1999) Mutational analysis of Escherichia coli DNA ligase identifies amino acids required for nick-ligation in vitro and for in vivo complementation of the growth of yeast cells deleted for CDC9 and LIG4. Nucleic Acids Res 27: 3953-3963.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 3953-3963
-
-
Sriskanda, V.1
Schwer, B.2
Ho, C.K.3
Shuman, S.4
-
39
-
-
34447508310
-
Mycobacterial nonhomologous end joining mediates mutagenic repair of chromosomal double-strand DNA breaks
-
Stephanou, N.C., Gao, F., Bongiorno, P., Ehrt, S., Schnappinger, D., Shuman, S., and Glickman, M.S. (2007) Mycobacterial nonhomologous end joining mediates mutagenic repair of chromosomal double-strand DNA breaks. J Bacteriol 189: 5237-5246.
-
(2007)
J Bacteriol
, vol.189
, pp. 5237-5246
-
-
Stephanou, N.C.1
Gao, F.2
Bongiorno, P.3
Ehrt, S.4
Schnappinger, D.5
Shuman, S.6
Glickman, M.S.7
-
40
-
-
77951187826
-
Gap filling activities of Pseudomonas DNA ligase D (LigD) polymerase and functional interactions of LigD with the DNA end-binding Ku protein
-
Zhu, H., and Shuman, S. (2010) Gap filling activities of Pseudomonas DNA ligase D (LigD) polymerase and functional interactions of LigD with the DNA end-binding Ku protein. J Biol Chem 285: 4815-4825.
-
(2010)
J Biol Chem
, vol.285
, pp. 4815-4825
-
-
Zhu, H.1
Shuman, S.2
-
41
-
-
51549095956
-
Sgs1 helicase and two nucleases Dna2 and Exo1 resect DNA double-strand break ends
-
Zhu, Z., Chung, W.H., Shim, E.Y., Lee, S.E., and Ira, G. (2008) Sgs1 helicase and two nucleases Dna2 and Exo1 resect DNA double-strand break ends. Cell 134: 981-994.
-
(2008)
Cell
, vol.134
, pp. 981-994
-
-
Zhu, Z.1
Chung, W.H.2
Shim, E.Y.3
Lee, S.E.4
Ira, G.5
|