-
1
-
-
33744964530
-
Crystal structure and nonhomologous end joining function of the ligase domain of Mycobacterium DNA ligase D
-
Akey, D., Martins, A., Aniukwu, J., Glickman, M.S., Shuman, S., and Berger, J.M. 2006. Crystal structure and nonhomologous end joining function of the ligase domain of Mycobacterium DNA ligase D. J. Biol. Chem. 281: 13412-13423.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 13412-13423
-
-
Akey, D.1
Martins, A.2
Aniukwu, J.3
Glickman, M.S.4
Shuman, S.5
Berger, J.M.6
-
2
-
-
0035212925
-
Two nonredundant SecA homologues function in mycobacteria
-
Braunstein, M., Brown, A.M., Kurtz, S., and Jacobs, W.R. 2001. Two nonredundant SecA homologues function in mycobacteria. J. Bacteriol. 183: 6979-6990.
-
(2001)
J. Bacteriol
, vol.183
, pp. 6979-6990
-
-
Braunstein, M.1
Brown, A.M.2
Kurtz, S.3
Jacobs, W.R.4
-
3
-
-
35349028355
-
Structure of a NHEJ polymerase-mediated synaptic complex
-
Brissett, N.C., Pitcher, R.S., Juarez, R., Picher, A.J., Green, A.J., Dafforn, T.R., Fox, G.C., Blanco, L., and Doherty, A.J. 2007. Structure of a NHEJ polymerase-mediated synaptic complex. Science 318: 456-459.
-
(2007)
Science
, vol.318
, pp. 456-459
-
-
Brissett, N.C.1
Pitcher, R.S.2
Juarez, R.3
Picher, A.J.4
Green, A.J.5
Dafforn, T.R.6
Fox, G.C.7
Blanco, L.8
Doherty, A.J.9
-
4
-
-
0347927261
-
The Gam protein of bacteriophage Mu is an orthologue of eukaryotic Ku
-
d'Adda di Fagagna, F., Weller, G.R., Doherty, A.J., and Jackson, S.P. 2003. The Gam protein of bacteriophage Mu is an orthologue of eukaryotic Ku. EMBO Rep. 4: 47-52.
-
(2003)
EMBO Rep
, vol.4
, pp. 47-52
-
-
d'Adda di Fagagna, F.1
Weller, G.R.2
Doherty, A.J.3
Jackson, S.P.4
-
5
-
-
7444269607
-
Mycobacterial Ku and ligase proteins constitute a two-component NHEJ repair machine
-
Della, M., Palmbos, P.L., Tseng, H.M., Tonkin, L.M., Daley, J.M., Topper, L.M., Pitcher, R.S., Tomkinson, A.E., Wilson, T.E., and Doherty, A.J. 2004. Mycobacterial Ku and ligase proteins constitute a two-component NHEJ repair machine. Science 306: 683-685.
-
(2004)
Science
, vol.306
, pp. 683-685
-
-
Della, M.1
Palmbos, P.L.2
Tseng, H.M.3
Tonkin, L.M.4
Daley, J.M.5
Topper, L.M.6
Pitcher, R.S.7
Tomkinson, A.E.8
Wilson, T.E.9
Doherty, A.J.10
-
6
-
-
4444339506
-
Two modes of DNA double-strand break repair are reciprocally regulated through fission yeast cell cycle
-
Ferreira, M.G. and Cooper, J.P. 2004. Two modes of DNA double-strand break repair are reciprocally regulated through fission yeast cell cycle. Genes & Dev. 18: 2249-2254.
-
(2004)
Genes & Dev
, vol.18
, pp. 2249-2254
-
-
Ferreira, M.G.1
Cooper, J.P.2
-
7
-
-
2442717521
-
Biochemical and genetic analysis of the four DNA ligases of mycobacteria
-
Gong, C., Martins, A., Bongiorno, P., Glickman, M., and Shuman, S. 2004. Biochemical and genetic analysis of the four DNA ligases of mycobacteria. J. Biol. Chem. 279: 20594-20606.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 20594-20606
-
-
Gong, C.1
Martins, A.2
Bongiorno, P.3
Glickman, M.4
Shuman, S.5
-
8
-
-
18744380665
-
Mechanism of nonhomologous end-joining in mycobacteria: A low fidelity repair system driven by Ku, ligase D and ligase C
-
Gong, C., Bongiorno, P., Martins, A., Stephanou, N.C., Zhu, H., Shuman, S., and Glickman, M.S. 2005. Mechanism of nonhomologous end-joining in mycobacteria: A low fidelity repair system driven by Ku, ligase D and ligase C. Nat. Struct. Mol. Biol. 12: 304-312.
-
(2005)
Nat. Struct. Mol. Biol
, vol.12
, pp. 304-312
-
-
Gong, C.1
Bongiorno, P.2
Martins, A.3
Stephanou, N.C.4
Zhu, H.5
Shuman, S.6
Glickman, M.S.7
-
10
-
-
34548534319
-
Expression of Mycobacterium tuberculosis Ku and Ligase D in Escherichia coli results in RecA and RecB-independent DNA end-joining at regions of microhomology
-
Malyarchuk, S., Wright, D., Castore, R., Klepper, E., Weiss, B., Doherty, A.J., and Harrison, L. 2007. Expression of Mycobacterium tuberculosis Ku and Ligase D in Escherichia coli results in RecA and RecB-independent DNA end-joining at regions of microhomology. DNA Repair (Amst.) 6: 1413-1424.
-
(2007)
DNA Repair (Amst.)
, vol.6
, pp. 1413-1424
-
-
Malyarchuk, S.1
Wright, D.2
Castore, R.3
Klepper, E.4
Weiss, B.5
Doherty, A.J.6
Harrison, L.7
-
11
-
-
34247892342
-
Role of DNA repair by nonhomologous end joining in Bacillus subtilis spore resistance to extreme dryness, mono- and polychromatic UV, and ionizing radiation
-
Moeller, R., Stackebrandt, E., Reitz, G., Berger, T., Rettberg, P., Doherty, A.J., Horneck, G., and Nicholson, W.L. 2007. Role of DNA repair by nonhomologous end joining in Bacillus subtilis spore resistance to extreme dryness, mono- and polychromatic UV, and ionizing radiation. J. Bacteriol. 189: 3306-3311.
-
(2007)
J. Bacteriol
, vol.189
, pp. 3306-3311
-
-
Moeller, R.1
Stackebrandt, E.2
Reitz, G.3
Berger, T.4
Rettberg, P.5
Doherty, A.J.6
Horneck, G.7
Nicholson, W.L.8
-
12
-
-
22544434934
-
Domain structure of a NHEJ repair ligase from Mycobacterium tuberculosis
-
Pitcher, R.S., Tonkin, L.M., Green, A.J., and Doherty, A.J. 2005. Domain structure of a NHEJ repair ligase from Mycobacterium tuberculosis. J. Mol. Biol. 351: 531-544.
-
(2005)
J. Mol. Biol
, vol.351
, pp. 531-544
-
-
Pitcher, R.S.1
Tonkin, L.M.2
Green, A.J.3
Doherty, A.J.4
-
13
-
-
33748163109
-
Mycobacteriophage exploit NHEJ to facilitate genome circularization
-
Pitcher, R.S., Tonkin, L.M., Daley, J.M., Palmbos, P.L., Green, A.J., Velting, T.L., Brzostek, A., Korycka-Machala, M., Cresawn, S., Dziadek, J., et al. 2006. Mycobacteriophage exploit NHEJ to facilitate genome circularization. Mol. Cell 23: 743-748.
-
(2006)
Mol. Cell
, vol.23
, pp. 743-748
-
-
Pitcher, R.S.1
Tonkin, L.M.2
Daley, J.M.3
Palmbos, P.L.4
Green, A.J.5
Velting, T.L.6
Brzostek, A.7
Korycka-Machala, M.8
Cresawn, S.9
Dziadek, J.10
-
14
-
-
35848960148
-
Nonhomologous end-joining in bacteria: A microbial perspective
-
Pitcher, R.S., Brissett, N.C., and Doherty, A.J. 2007a. Nonhomologous end-joining in bacteria: A microbial perspective. Annu. Rev. Microbiol. 61: 259-282.
-
(2007)
Annu. Rev. Microbiol
, vol.61
, pp. 259-282
-
-
Pitcher, R.S.1
Brissett, N.C.2
Doherty, A.J.3
-
15
-
-
34547842081
-
NHEJ protects mycobacteria in stationary phase against the harmful effects of dessication
-
Pitcher, R.S., Green, A.J., Brzostek, A., Korycka-Machala, M., Dziadek, J., and Doherty, A.J. 2007b. NHEJ protects mycobacteria in stationary phase against the harmful effects of dessication. DNA Repair (Amst.) 6: 1271-1276.
-
(2007)
DNA Repair (Amst.)
, vol.6
, pp. 1271-1276
-
-
Pitcher, R.S.1
Green, A.J.2
Brzostek, A.3
Korycka-Machala, M.4
Dziadek, J.5
Doherty, A.J.6
-
16
-
-
33846382667
-
Structure and function of a mycobacterial NHEJ DNA repair polymerase
-
Pitcher, R.S., Brissett, N.C., Picher, A.J., Andrade, P., Juarez, R., Thompson, D., Fox, G.C., Blanco, L., and Doherty, A.J. 2007c. Structure and function of a mycobacterial NHEJ DNA repair polymerase. J. Mol. Biol. 366: 391-405.
-
(2007)
J. Mol. Biol
, vol.366
, pp. 391-405
-
-
Pitcher, R.S.1
Brissett, N.C.2
Picher, A.J.3
Andrade, P.4
Juarez, R.5
Thompson, D.6
Fox, G.C.7
Blanco, L.8
Doherty, A.J.9
-
17
-
-
24944477416
-
A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation
-
Ponder, R.G., Fonville, N.C., and Rosenberg, S.M. 2005. A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation. Mol. Cell 19: 791-804.
-
(2005)
Mol. Cell
, vol.19
, pp. 791-804
-
-
Ponder, R.G.1
Fonville, N.C.2
Rosenberg, S.M.3
-
18
-
-
35348890199
-
Bacterial DNA repair by non-homologous end joining
-
Shuman, S. and Glickman, M.S. 2007. Bacterial DNA repair by non-homologous end joining. Nat. Rev. Microbiol. 5: 852-861.
-
(2007)
Nat. Rev. Microbiol
, vol.5
, pp. 852-861
-
-
Shuman, S.1
Glickman, M.S.2
-
19
-
-
9144271294
-
Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks
-
Singleton, M.R., Dillingham, M.S., Gaudier, M., Kowalczykowski, S.C., and Wigley, D.B. 2004. Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks. Nature 432: 187-193.
-
(2004)
Nature
, vol.432
, pp. 187-193
-
-
Singleton, M.R.1
Dillingham, M.S.2
Gaudier, M.3
Kowalczykowski, S.C.4
Wigley, D.B.5
-
20
-
-
0025081151
-
Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis
-
Snapper, S.B., Melton, R.E., Mustafa, S., Kieser, T., and Jacobs Jr., W.R., 1990. Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis. Mol. Microbiol 4: 1911-1919.
-
(1990)
Mol. Microbiol
, vol.4
, pp. 1911-1919
-
-
Snapper, S.B.1
Melton, R.E.2
Mustafa, S.3
Kieser, T.4
Jacobs Jr., W.R.5
-
21
-
-
34447508310
-
Mycobacterial nonhomologous end joining mediates mutagenic repair of chromosomal double-strand DNA breaks
-
Stephanou, N.C., Gao, F., Bongiorno, P., Ehrt, S., Schnappinger, D., Shuman, S., and Glickman, M.S. 2007. Mycobacterial nonhomologous end joining mediates mutagenic repair of chromosomal double-strand DNA breaks. J. Bacteriol. 189: 5237-5246.
-
(2007)
J. Bacteriol
, vol.189
, pp. 5237-5246
-
-
Stephanou, N.C.1
Gao, F.2
Bongiorno, P.3
Ehrt, S.4
Schnappinger, D.5
Shuman, S.6
Glickman, M.S.7
-
22
-
-
0032530658
-
Homologous recombination and nonhomologous end-joining pathways of DNA double-strand break repair have overlapping roles in the maintenance of chromosomal integrity in vertebrate cells
-
Takata, M., Sasaki, M.S., Sonoda, E., Morrison, C., Hashimoto, M., Utsumi, H., Tamaguchhi-Iwai, Y., Shinohara, A., and Takeda, S. 1998. Homologous recombination and nonhomologous end-joining pathways of DNA double-strand break repair have overlapping roles in the maintenance of chromosomal integrity in vertebrate cells. EMBO J. 17: 5497-5508.
-
(1998)
EMBO J
, vol.17
, pp. 5497-5508
-
-
Takata, M.1
Sasaki, M.S.2
Sonoda, E.3
Morrison, C.4
Hashimoto, M.5
Utsumi, H.6
Tamaguchhi-Iwai, Y.7
Shinohara, A.8
Takeda, S.9
-
23
-
-
33644624369
-
DNA ligases: Structure, reaction mechanism, and function
-
Tomkinson, A.E., Vijayakumar, S., Pascal, J.M., and Ellenberger, T. 2006. DNA ligases: Structure, reaction mechanism, and function. Chem. Rev. 106: 687-699.
-
(2006)
Chem. Rev
, vol.106
, pp. 687-699
-
-
Tomkinson, A.E.1
Vijayakumar, S.2
Pascal, J.M.3
Ellenberger, T.4
-
24
-
-
33645097172
-
The forespore line of gene expression in Bacillus subtilis
-
Wang, S.T., Setlow, B., Conlon, E.M., Lyon, J.L., Imamura, D., Sata, T., Setlow, P., Losick, R., and Eichenberger, P. 2006. The forespore line of gene expression in Bacillus subtilis. J. Mol. Biol. 358: 16-37.
-
(2006)
J. Mol. Biol
, vol.358
, pp. 16-37
-
-
Wang, S.T.1
Setlow, B.2
Conlon, E.M.3
Lyon, J.L.4
Imamura, D.5
Sata, T.6
Setlow, P.7
Losick, R.8
Eichenberger, P.9
-
25
-
-
0037031655
-
Identification of a DNA nonhomologous end-joining complex in bacteria
-
Weller, G.R., Kysela, B., Roy, R., Tonkin, L.M., Scanlan, E., Della, M., Devine, S.K., Day, J.P., Wilkinson, A., d'Adda di Fagagna, F., et al. 2002. Identification of a DNA nonhomologous end-joining complex in bacteria. Science 297: 1686-1689.
-
(2002)
Science
, vol.297
, pp. 1686-1689
-
-
Weller, G.R.1
Kysela, B.2
Roy, R.3
Tonkin, L.M.4
Scanlan, E.5
Della, M.6
Devine, S.K.7
Day, J.P.8
Wilkinson, A.9
d'Adda di Fagagna, F.10
-
26
-
-
33748754050
-
Nucleotide misincorporation, 3′-mismatch extension, and responses to abasic sites and DNA adducts by the polymerase component of bacterial DNA ligase D
-
Yakovleva, L. and Shuman, S. 2006. Nucleotide misincorporation, 3′-mismatch extension, and responses to abasic sites and DNA adducts by the polymerase component of bacterial DNA ligase D. J. Biol. Chem. 281: 25026-25040.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 25026-25040
-
-
Yakovleva, L.1
Shuman, S.2
-
27
-
-
0026705772
-
The catalase-peroxidase gene and isoniazid resistance of Mycobacterium tuberculosis
-
Zhang, Y., Heym, B., Allen, B., Young, D., and Cole, S. 1992. The catalase-peroxidase gene and isoniazid resistance of Mycobacterium tuberculosis. Nature 358: 591-593.
-
(1992)
Nature
, vol.358
, pp. 591-593
-
-
Zhang, Y.1
Heym, B.2
Allen, B.3
Young, D.4
Cole, S.5
-
28
-
-
12844250647
-
A primer-dependent polymerase function of Pseudomonas aeruginosa ATP-dependent DNA ligase (LigD)
-
Zhu, H. and Shuman, S. 2005a. A primer-dependent polymerase function of Pseudomonas aeruginosa ATP-dependent DNA ligase (LigD). J. Biol. Chem. 280: 418-427.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 418-427
-
-
Zhu, H.1
Shuman, S.2
-
29
-
-
22544469168
-
Novel 3′-ribonuclease and 3′-phosphatase activities of the bacterial non-homologous endjoining protein, DNA ligase D
-
Zhu, H. and Shuman, S. 2005b. Novel 3′-ribonuclease and 3′-phosphatase activities of the bacterial non-homologous endjoining protein, DNA ligase D. J. Biol. Chem. 280: 25973-25981.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 25973-25981
-
-
Zhu, H.1
Shuman, S.2
-
30
-
-
33744929414
-
Substrate specificity and structure-function analysis of the 3′-phosphoesterase component of the bacterial NHEJ protein, DNA Ligase D
-
Zhu, H. and Shuman, S. 2006. Substrate specificity and structure-function analysis of the 3′-phosphoesterase component of the bacterial NHEJ protein, DNA Ligase D. J. Biol. Chem. 281: 13873-13881.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 13873-13881
-
-
Zhu, H.1
Shuman, S.2
-
31
-
-
34547134744
-
Characterization of Agrobacterium tumefaciens DNA ligases C and D
-
Zhu, H. and Shuman, S. 2007. Characterization of Agrobacterium tumefaciens DNA ligases C and D. Nucleic Acids Res. 35: 3631-3645.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3631-3645
-
-
Zhu, H.1
Shuman, S.2
-
32
-
-
26644442141
-
Essential constituents of the 3′-phosphoesterase domain of bacterial DNA ligase D, a nonhomologous end-joining enzyme
-
Zhu, H., Wang, L.K., and Shuman, S. 2005. Essential constituents of the 3′-phosphoesterase domain of bacterial DNA ligase D, a nonhomologous end-joining enzyme. J. Biol. Chem. 280: 33707-33715.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 33707-33715
-
-
Zhu, H.1
Wang, L.K.2
Shuman, S.3
-
33
-
-
32444451295
-
Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
-
Zhu, H., Nandakumar, J., Aniukwu, J., Wang, L.K., Glickman, M.S., Lima, C.D., and Shuman, S. 2006. Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D. Proc. Natl. Acad. Sci. 103: 1711-1716.
-
(2006)
Proc. Natl. Acad. Sci
, vol.103
, pp. 1711-1716
-
-
Zhu, H.1
Nandakumar, J.2
Aniukwu, J.3
Wang, L.K.4
Glickman, M.S.5
Lima, C.D.6
Shuman, S.7
|