Development of the field of structural physiology

Proceedings of the Japan Academy Series B: Physical and Biological Sciences

Volumn 91, Issue 9, 2015, Pages 447-468

  Fujiyoshi, Yoshinori ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

Cryo electron microscopy; Electron crystallography; Gap junction; Ion channel; Tight junction; Water channel

Indexed keywords

ION CHANNEL;

AMINO ACID SEQUENCE; ANIMAL; CHEMISTRY; CRYOELECTRON MICROSCOPY; CRYSTALLOGRAPHY; HUMAN; METABOLISM; MOLECULAR GENETICS; PHYSIOLOGY; PROCEDURES;

AMINO ACID SEQUENCE; ANIMALS; CRYOELECTRON MICROSCOPY; CRYSTALLOGRAPHY; HUMANS; ION CHANNELS; MOLECULAR SEQUENCE DATA; PHYSIOLOGY;

EID: 84958744631     PISSN: 03862208     EISSN: 13492896     Source Type: Journal    
DOI: 10.2183/pjab.91.447     Document Type: Review

References (49)

1. Declan, A.D., Cabral, J.H.M., Pfuetzner, R.A., Kuo, A., Gulbis, J.M., Cohen, S.L., Chait, B.T. and MacKinnon, R. (1998) Structure of the potassium channel: molecular basis of KD conduction and selectivity. Science 280, 69-77.
2. Cabral, J.H.M., Zhou, Y. and MacKinnon, R. (2001) Energetic optimization of ion conduction rate by the KD selectivity filter. Nature 414, 37-42.
3. Zhou, Y., Cabral, J.H.M., Kaufman, A. and MacKinnon, R. (2001) Chemistry of ion coordination and hydration revealed by a KD channel-Fab complex at 2.0Å resolution. Nature 414, 43-48.
4. Jiang, Y., Ruta, V., Chen, J., Lee, A. and MacKinnon, R. (2003) The principle of gating charge movement in a voltage-dependent KD channel. Nature 423, 42-48.
5. Long, S.B.L., Tao, X., Campbell, E.B. and MacKinnon, R. (2007) Atomic structure of a voltage-dependent KD channel in a lipid membrane-like environment. Nature 450, 376-382.
6. Walz, T., Hirai, T., Murata, K., Heymann, J.B., Mitsuoka, K., Fujiyoshi, Y., Smith, B.L., Agre, P. and Engel, A. (1997) Three-dimensional structure of aquaporin 1. Nature 287, 624-627.
7. Murata, K., Mitsuoka, K., Hirai, T., Walz, T., Agre, P., Heymann, J.B., Engel, A. and Fujiyoshi, Y. (2000) Structural determinants of water permeation through aquaporin-1. Nature 407, 599-605.
8. Gonen, T., Cheng, Y., Sliz, P., Hiroaki, Y., Fujiyoshi, Y., Harrison, S.C. and Walz, T. (2005) Lipidprotein interactions in double-layered two-dimensional AQP0 crystals. Nature 438, 633-638.
9. Hiroaki, Y., Tani, K., Kamegawa, A., Gyobu, N., Nishikawa, K., Suzuki, H., Walz, T., Sasaki, S., Mitsuoka, K., Kimura, K., Mizoguchi, A. and Fujiyoshi, Y. (2006) Implications of the aquaporin-4 structure on Array formation and cell adhesion. J. Mol. Biol. 355, 628-639.
10. Suzuki, H., Nishikawa, K., Hiroaki, Y. and Fujiyoshi, Y. (2008) Formation of aquaporin-4 arrays is inhibited by palmitoylation of N-terminal cysteine residues. Biochim. Biophys. Acta 1778, 1181-1189.
11. Uyeda, N., Kobayashi, T., Ishizuka, K. and Fujiyoshi, Y. (1979) High voltage electron microscopy for image discrimination of constituent atoms in crystals and molecules. Chem. Scr. 14, 47-61.
12. Uyeda, N., Kobayashi, T., Ishizuka, K. and Fujiyoshi, Y. (1980) Crystal structure of Ag-TCNQ. Nature 285, 95-97.
13. Abe, K., Tani, K., Nishizawa, T. and Fujiyoshi, Y. (2009) Inter-subunit interaction of gastric HD,KDATPase prevents reverse reaction of the transport cycle. EMBO J. 28, 1637-1643.
14. Unwin, N. (1995) Acetylcholine receptor channel imaged in the open state. Nature 373, 37-43.
15. Miyazawa, A., Fujiyoshi, Y. and Unwin, N. (2003) Structure and gating mechanism of the acetylcholine receptor pore. Nature 423, 949-955.
16. Unwin, N. and Fujiyoshi, Y. (2012) Gating movement of acetylcholine receptor caught by plungefreezing. J. Mol. Biol. 422, 617-634.
17. Henderson, R. and Unwin, P.N.T. (1975) Threedimensional model of purple membrane obtained by electron microscopy. Nature 257, 28-32.
18. Liao, M., Cao, E., Julius, D. and Cheng, Y. (2013) Structure of TRPV1 ion channel determined by electron cryo-microscopy. Nature 504, 107-112.
19. Adrian, M., Dubochet, J., Lepault, J. and McDwall, A.W. (1984) Cryo-electron microscopy of viruses. Nature 308, 32-36.
20. Fujiyoshi, Y., Mizusaki, T., Morikawa, K., Yamagishi, H., Aoki, Y., Kihara, H. and Harada, Y. (1991) Development of a superfluid helium stage for high-resolution electron microscopy. Ultramicroscopy 38, 241-251.
21. Fujiyoshi, Y. (1998) The structural study of membrane proteins by electron crystallography. Adv. Biophys. 35, 25-80.
22. Hirai, T., Murata, K., Mitsuoka, K., Kimura, Y. and Fujiyoshi, Y. (1999) Trehalose embedding technique for high-resolution electron crystallography. J. Electron Microsc. (Tokyo) 48, 653-658.
23. Gonen, T., Cheng, Y., Sliz, P., Hiroaki, Y., Fujiyoshi, Y., Harrison, S.C. and Walz, T. (2005) Lipidprotein interactions in double-layered two-dimensional AQP0 crystals. Nature 438, 633-638.
24. Kimura, Y., Vassylyev, D.G., Miyazawa, A., Kidera, A., Matsushima, M., Mitsuoka, K., Murata, K., Hirai, T. and Fujiyoshi, Y. (1997) Surface of bacteriorhodopsin revealed by high-resolution electron crystallography. Nature 389, 206-211.
25. Kuehlbrandt, W., Wang, D.N. and Fujiyoshi, Y. (1994) Atomic model of plant light-harvesting complex by electron crystallography. Nature 367, 614-621.
26. Sato, C., Ueno, Y., Asai, K., Takahashi, K., Sato, M., Engel, A. and Fujiyoshi, Y. (2001) The voltagesensitive sodium channel is a bell-shaped molecule with several cavities. Nature 409, 1047-1051.
27. Payandeh, J., Scheuer, T., Zheng, N. and Catterall, W.A. (2011) The crystal structure of a voltagegated sodium channel. Nature 475, 353-357.
28. Tsai, C.J., Tani, K., Irie, K., Hiroaki, Y., Shimomura, T., McMillan, D.G., Cook, G.M., Schertler, G., Fujiyoshi, Y. and Li, X.D. (2013) Two alternative conformations of voltage-gated sodium channel. J. Mol. Biol. 425, 4074-4088.
29. Irie, K., Kitagawa, K., Nagura, H., Imai, T., Shimomura, T. and Fujiyoshi, Y. (2010) Comparative study of the gating motif and C-type inactivation in prokaryotic voltage-gated sodium channels. J. Biol. Chem. 285, 3685-3694.
30. Agre, P., King, L.S., Yasui, M., Guggino, W.B., Ottersen, O.P., Fujiyoshi, Y., Engel, A. and Nielsen, S. (2002) Aquaporin water channels-from atomic structure to clinical medicine. J. Physiol. 542, 3-16.
31. Ho, J.D., Yeh, R., Sandstrom, A., Chormy, I., Harries, W.E.C., Robbins, R.A., Miercke, L.J.W. and Stroud, R.M. (2009) Crystal structure of human aquaporin 4 at 1.8Å and its mechanism of conductance. Proc. Natl. Acad. Sci. U.S.A. 106, 7437-7442.
32. Sengpta, D., Behera, R.N., Smith, J.C. and Ullmann, G.M. (2005) The , helix dipole: screened out. Structure 13, 849-855.
33. Rash, J.E., Yasumura, T., Hudson, C.S., Agre, P. and Nielsen, S. (1998) Direct immunogold labeling of aquaporin-4 in square arrays of astrocyte and ependymocyte plasma membranes in the rat brain and spinal cord. Proc. Natl. Acad. Sci. U.S.A. 95, 11981-11986.
34. Fujimoto, K. (1997) SDS-digested freeze-fracture replica labeling electron microscopy to study the two-dimensional distribution of integral membrane proteins and phospholipids in biomembranes: practical procedure, interpretation and application. Histochem. Cell Biol. 107, 87-96.
35. Suzuki, H., Nishikawa, K., Hiroaki, Y. and Fujiyoshi, Y. (2008) Formation of aquaporin-4 arrays is inhibited by palmitoylation of N-terminal cysteine residues. Biochim. Biophys. Acta 1778, 1181-1189.
36. Iwamoto, K., Kakiuchi, C., Bundo, M., Ikeda, K. and Kato, T. (2004) Molecular characterization of bipolar disorder by comparing gene expression profiles of postmortem brains of major mental disorders. Mol. Psychiatry 9, 406-416.
37. Oshima, A., Tani, K., Hiroaki, Y., Fujiyoshi, Y. and Sosinsky, G.E. (2007) Three-dimensional structure of a human connexin26 gap junction channel reveals a plug in the vestibule. Proc. Natl. Acad. Sci. U.S.A. 104, 10034-10039.
38. Maeda, S., Nakagawa, S., Suga, M., Yamashita, E., Oshima, A., Fujiyoshi, Y. and Tsukihara, T. (2009) Structure of the connexin-26 gap junction channel at 3.5Å resolution. Nature 458, 597-602.
39. Oshima, A., Tani, K., Toloue, M.M., Hiroaki, Y., Smock, A., Inukai, S., Cone, A., Nicholson, B.J., Sosinsky, G.E. and Fujiyoshi, Y. (2011) Asymmetric configurations and N-terminal rearrangements in connexin26 gap junction channels. J. Mol. Biol. 405, 724-735.
40. Ohta, Y., Nishikawa, K., Hiroaki, Y. and Fujiyoshi, Y. (2011) Electron tomographic analysis of gap junctions in the lateral giant fibers of crayfish. J. Struct. Biol. 175, 49-61.
41. Furuse, M., Fujita, K., Hiiragi, T., Fujimoto, K. and Tsukita, S. (1998) Claudin-1 and-2: novel integral membrane proteins localizing at tight junctions with no sequence similarity to occludin. J. Cell Biol. 141, 1539-1550.
42. Suzuki, H., Nishizawa, T., Tani, K., Yamazaki, Y., Tamura, A., Ishitani, R., Domae, N., Tsukita, S., Nureki, O. and Fujiyoshi, Y. (2014) Crystal structure of a claudin provides insight into the architecture of tight junctions. Science 344, 304-307.
43. Suzuki, H., Tani, K., Tamura, A., Tsukita, S. and Fujiyoshi, Y. (2015) Model for the architecture of claudin-based paracellular ion channels through tight junctions. J. Mol. Biol. 427, 291-297.
44. Nitta, T., Hata, M., Gotoh, S., Seo, Y., Sasaki, H., Furuse, M. and Tsukita, S. (2003) Size-selective loosening of the blood-brain harrier in claudin-5-deficient mice. J. Cell Biol. 161, 653-660.
45. Saitoh, Y., Suzuki, H., Tani, K., Nishikawa, K., Irie, K., Ogura, Y., Tamura, A., Tsuchita, S. and Fujiyoshi, Y. (2015) Structural insight into tight junction disassembly by Clostridium perfringens enterotoxin. Science 347, 775-778.
46. Paulsen, C., Armache, J.P., Gao, Y., Cheng, Y. and Julius, D. (2015) Structure of the TRPA1 ion channel suggests regulatory mechanisms. Nature 520, 511-517.
47. Bartesaghi, A., Merk, A., Banerjee, S., Matthies, D., Wu, X., Milne, J.L.S. and Subramaniam, S. (2015) 2.2Å resolution cryo-EM structure of b-galactosidase in complex with a cell-permeant inhibitor. Science 348, 1147-1151.
48. Li, X., Mooney, P., Zheng, S., Booth, C.R., Braunfeld, M.B., Gubbens, S., Agard, D.A. and Cheng, Y. (2013) Electron counting and beaminduced motion correction enable near-atomicresolution single-particle cryo-EM. Nat. Methods 10, 584-590.
49. Henderson, R. (1995) The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules. Q. Rev. Biophys. 28, 171-193.