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Volumn 14, Issue 5, 2016, Pages 1156-1168

The Histone Variant MacroH2A1.2 Is Necessary for the Activation of Muscle Enhancers and Recruitment of the Transcription Factor Pbx1

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE; HISTONE H3; HISTONE VARIANT MACROH2A1.2; TRANSCRIPTION FACTOR PBX1; UNCLASSIFIED DRUG; CHROMATIN; HOMEODOMAIN PROTEIN; MACROH2A HISTONE; MYOD PROTEIN; PBX1 PROTEIN, MOUSE; PROTEIN BINDING; TRANSCRIPTION FACTOR; TRANSCRIPTOME;

EID: 84958019644     PISSN: None     EISSN: 22111247     Source Type: Journal    
DOI: 10.1016/j.celrep.2015.12.103     Document Type: Article
Times cited : (47)

References (71)
  • 1
    • 84876979661 scopus 로고    scopus 로고
    • Macrohistone variants preserve cell identity by preventing the gain of H3K4me2 during reprogramming to pluripotency
    • Barrero M.J., Sese B., Kuebler B., Bilic J., Boue S., Martí M., Izpisua Belmonte J.C. Macrohistone variants preserve cell identity by preventing the gain of H3K4me2 during reprogramming to pluripotency. Cell Rep. 2013, 3:1005-1011.
    • (2013) Cell Rep. , vol.3 , pp. 1005-1011
    • Barrero, M.J.1    Sese, B.2    Kuebler, B.3    Bilic, J.4    Boue, S.5    Martí, M.6    Izpisua Belmonte, J.C.7
  • 4
    • 0025238437 scopus 로고
    • The protein Id: a negative regulator of helix-loop-helix DNA binding proteins
    • Benezra R., Davis R.L., Lockshon D., Turner D.L., Weintraub H. The protein Id: a negative regulator of helix-loop-helix DNA binding proteins. Cell 1990, 61:49-59.
    • (1990) Cell , vol.61 , pp. 49-59
    • Benezra, R.1    Davis, R.L.2    Lockshon, D.3    Turner, D.L.4    Weintraub, H.5
  • 5
    • 0035102798 scopus 로고    scopus 로고
    • Molecular distinction between specification and differentiation in the myogenic basic helix-loop-helix transcription factor family
    • Bergstrom D.A., Tapscott S.J. Molecular distinction between specification and differentiation in the myogenic basic helix-loop-helix transcription factor family. Mol. Cell. Biol. 2001, 21:2404-2412.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 2404-2412
    • Bergstrom, D.A.1    Tapscott, S.J.2
  • 6
    • 2442575665 scopus 로고    scopus 로고
    • Pbx marks genes for activation by MyoD indicating a role for a homeodomain protein in establishing myogenic potential
    • Berkes C.A., Bergstrom D.A., Penn B.H., Seaver K.J., Knoepfler P.S., Tapscott S.J. Pbx marks genes for activation by MyoD indicating a role for a homeodomain protein in establishing myogenic potential. Mol. Cell 2004, 14:465-477.
    • (2004) Mol. Cell , vol.14 , pp. 465-477
    • Berkes, C.A.1    Bergstrom, D.A.2    Penn, B.H.3    Seaver, K.J.4    Knoepfler, P.S.5    Tapscott, S.J.6
  • 9
    • 84888877924 scopus 로고    scopus 로고
    • Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
    • Buenrostro J.D., Giresi P.G., Zaba L.C., Chang H.Y., Greenleaf W.J. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nat. Methods 2013, 10:1213-1218.
    • (2013) Nat. Methods , vol.10 , pp. 1213-1218
    • Buenrostro, J.D.1    Giresi, P.G.2    Zaba, L.C.3    Chang, H.Y.4    Greenleaf, W.J.5
  • 11
    • 33748743632 scopus 로고    scopus 로고
    • The histone variant macro-H2A preferentially forms "hybrid nucleosomes"
    • Chakravarthy S., Luger K. The histone variant macro-H2A preferentially forms "hybrid nucleosomes". J. Biol. Chem. 2006, 281:25522-25531.
    • (2006) J. Biol. Chem. , vol.281 , pp. 25522-25531
    • Chakravarthy, S.1    Luger, K.2
  • 13
    • 84908875248 scopus 로고    scopus 로고
    • MacroH2A1.1 and PARP-1 cooperate to regulate transcription by promoting CBP-mediated H2B acetylation
    • Chen H., Ruiz P.D., Novikov L., Casill A.D., Park J.W., Gamble M.J. MacroH2A1.1 and PARP-1 cooperate to regulate transcription by promoting CBP-mediated H2B acetylation. Nat. Struct. Mol. Biol. 2014, 21:981-989.
    • (2014) Nat. Struct. Mol. Biol. , vol.21 , pp. 981-989
    • Chen, H.1    Ruiz, P.D.2    Novikov, L.3    Casill, A.D.4    Park, J.W.5    Gamble, M.J.6
  • 14
    • 0033388099 scopus 로고    scopus 로고
    • An early developmental transcription factor complex that is more stable on nucleosome core particles than on free DNA
    • Cirillo L.A., Zaret K.S. An early developmental transcription factor complex that is more stable on nucleosome core particles than on free DNA. Mol. Cell 1999, 4:961-969.
    • (1999) Mol. Cell , vol.4 , pp. 961-969
    • Cirillo, L.A.1    Zaret, K.S.2
  • 15
    • 0036184236 scopus 로고    scopus 로고
    • Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4
    • Cirillo L.A., Lin F.R., Cuesta I., Friedman D., Jarnik M., Zaret K.S. Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4. Mol. Cell 2002, 9:279-289.
    • (2002) Mol. Cell , vol.9 , pp. 279-289
    • Cirillo, L.A.1    Lin, F.R.2    Cuesta, I.3    Friedman, D.4    Jarnik, M.5    Zaret, K.S.6
  • 16
    • 0027270989 scopus 로고
    • Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5
    • Clark K.L., Halay E.D., Lai E., Burley S.K. Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5. Nature 1993, 364:412-420.
    • (1993) Nature , vol.364 , pp. 412-420
    • Clark, K.L.1    Halay, E.D.2    Lai, E.3    Burley, S.K.4
  • 17
    • 0032507949 scopus 로고    scopus 로고
    • Histone macroH2A1 is concentrated in the inactive X chromosome of female mammals
    • Costanzi C., Pehrson J.R. Histone macroH2A1 is concentrated in the inactive X chromosome of female mammals. Nature 1998, 393:599-601.
    • (1998) Nature , vol.393 , pp. 599-601
    • Costanzi, C.1    Pehrson, J.R.2
  • 18
    • 0035877759 scopus 로고    scopus 로고
    • MACROH2A2, a new member of the MARCOH2A core histone family
    • Costanzi C., Pehrson J.R. MACROH2A2, a new member of the MARCOH2A core histone family. J. Biol. Chem. 2001, 276:21776-21784.
    • (2001) J. Biol. Chem. , vol.276 , pp. 21776-21784
    • Costanzi, C.1    Pehrson, J.R.2
  • 21
    • 0035858882 scopus 로고    scopus 로고
    • Synergism of Xist RNA, DNA methylation, and histone hypoacetylation in maintaining X chromosome inactivation
    • Csankovszki G., Nagy A., Jaenisch R. Synergism of Xist RNA, DNA methylation, and histone hypoacetylation in maintaining X chromosome inactivation. J. Cell Biol. 2001, 153:773-784.
    • (2001) J. Cell Biol. , vol.153 , pp. 773-784
    • Csankovszki, G.1    Nagy, A.2    Jaenisch, R.3
  • 22
    • 0023663888 scopus 로고
    • Expression of a single transfected cDNA converts fibroblasts to myoblasts
    • Davis R.L., Weintraub H., Lassar A.B. Expression of a single transfected cDNA converts fibroblasts to myoblasts. Cell 1987, 51:987-1000.
    • (1987) Cell , vol.51 , pp. 987-1000
    • Davis, R.L.1    Weintraub, H.2    Lassar, A.B.3
  • 25
    • 84866127830 scopus 로고    scopus 로고
    • Identifying ChIP-seq enrichment using MACS
    • Feng J., Liu T., Qin B., Zhang Y., Liu X.S. Identifying ChIP-seq enrichment using MACS. Nat. Protoc. 2012, 7:1728-1740.
    • (2012) Nat. Protoc. , vol.7 , pp. 1728-1740
    • Feng, J.1    Liu, T.2    Qin, B.3    Zhang, Y.4    Liu, X.S.5
  • 26
    • 84925939877 scopus 로고    scopus 로고
    • Conversion of MyoD to a neurogenic factor: binding site specificity determines lineage
    • Fong A.P., Yao Z., Zhong J.W., Johnson N.M., Farr G.H., Maves L., Tapscott S.J. Conversion of MyoD to a neurogenic factor: binding site specificity determines lineage. Cell Rep. 2015, 10:1937-1946.
    • (2015) Cell Rep. , vol.10 , pp. 1937-1946
    • Fong, A.P.1    Yao, Z.2    Zhong, J.W.3    Johnson, N.M.4    Farr, G.H.5    Maves, L.6    Tapscott, S.J.7
  • 27
    • 77955452081 scopus 로고    scopus 로고
    • Multiple facets of the unique histone variant macroH2A: from genomics to cell biology
    • Gamble M.J., Kraus W.L. Multiple facets of the unique histone variant macroH2A: from genomics to cell biology. Cell Cycle 2010, 9:2568-2574.
    • (2010) Cell Cycle , vol.9 , pp. 2568-2574
    • Gamble, M.J.1    Kraus, W.L.2
  • 28
    • 73549105474 scopus 로고    scopus 로고
    • The histone variant macroH2A1 marks repressed autosomal chromatin, but protects a subset of its target genes from silencing
    • Gamble M.J., Frizzell K.M., Yang C., Krishnakumar R., Kraus W.L. The histone variant macroH2A1 marks repressed autosomal chromatin, but protects a subset of its target genes from silencing. Genes Dev. 2010, 24:21-32.
    • (2010) Genes Dev. , vol.24 , pp. 21-32
    • Gamble, M.J.1    Frizzell, K.M.2    Yang, C.3    Krishnakumar, R.4    Kraus, W.L.5
  • 30
    • 0031034468 scopus 로고    scopus 로고
    • Two domains of MyoD mediate transcriptional activation of genes in repressive chromatin: a mechanism for lineage determination in myogenesis
    • Gerber A.N., Klesert T.R., Bergstrom D.A., Tapscott S.J. Two domains of MyoD mediate transcriptional activation of genes in repressive chromatin: a mechanism for lineage determination in myogenesis. Genes Dev. 1997, 11:436-450.
    • (1997) Genes Dev. , vol.11 , pp. 436-450
    • Gerber, A.N.1    Klesert, T.R.2    Bergstrom, D.A.3    Tapscott, S.J.4
  • 32
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz S., Benner C., Spann N., Bertolino E., Lin Y.C., Laslo P., Cheng J.X., Murre C., Singh H., Glass C.K. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 2010, 38:576-589.
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6    Cheng, J.X.7    Murre, C.8    Singh, H.9    Glass, C.K.10
  • 33
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • Huang W., Sherman B.T., Lempicki R.A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 2009, 37:1-13.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1-13
    • Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 34
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4:44-57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 36
    • 84918527386 scopus 로고    scopus 로고
    • Pioneer transcription factors in cell reprogramming
    • Iwafuchi-Doi M., Zaret K.S. Pioneer transcription factors in cell reprogramming. Genes Dev. 2014, 28:2679-2692.
    • (2014) Genes Dev. , vol.28 , pp. 2679-2692
    • Iwafuchi-Doi, M.1    Zaret, K.S.2
  • 37
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • Jenuwein T., Allis C.D. Translating the histone code. Science 2001, 293:1074-1080.
    • (2001) Science , vol.293 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 38
    • 34250745886 scopus 로고    scopus 로고
    • Nucleosome stability mediated by histone variants H3.3 and H2A.Z
    • Jin C., Felsenfeld G. Nucleosome stability mediated by histone variants H3.3 and H2A.Z. Genes Dev. 2007, 21:1519-1529.
    • (2007) Genes Dev. , vol.21 , pp. 1519-1529
    • Jin, C.1    Felsenfeld, G.2
  • 39
    • 68149150830 scopus 로고    scopus 로고
    • H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
    • Jin C., Zang C., Wei G., Cui K., Peng W., Zhao K., Felsenfeld G. H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nat. Genet. 2009, 41:941-945.
    • (2009) Nat. Genet. , vol.41 , pp. 941-945
    • Jin, C.1    Zang, C.2    Wei, G.3    Cui, K.4    Peng, W.5    Zhao, K.6    Felsenfeld, G.7
  • 43
    • 0041669491 scopus 로고    scopus 로고
    • Inactivating chromosomes: a macro domain that minimizes transcription
    • Ladurner A.G. Inactivating chromosomes: a macro domain that minimizes transcription. Mol. Cell 2003, 12:1-3.
    • (2003) Mol. Cell , vol.12 , pp. 1-3
    • Ladurner, A.G.1
  • 44
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B., Trapnell C., Pop M., Salzberg S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009, 10:R25.
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 45
    • 81755160905 scopus 로고    scopus 로고
    • PBX1 genomic pioneer function drives ERα signaling underlying progression in breast cancer
    • Magnani L., Ballantyne E.B., Zhang X., Lupien M. PBX1 genomic pioneer function drives ERα signaling underlying progression in breast cancer. PLoS Genet. 2011, 7:e1002368.
    • (2011) PLoS Genet. , vol.7 , pp. e1002368
    • Magnani, L.1    Ballantyne, E.B.2    Zhang, X.3    Lupien, M.4
  • 47
    • 84899415723 scopus 로고    scopus 로고
    • Every amino acid matters: essential contributions of histone variants to mammalian development and disease
    • Maze I., Noh K.M., Soshnev A.A., Allis C.D. Every amino acid matters: essential contributions of histone variants to mammalian development and disease. Nat. Rev. Genet. 2014, 15:259-271.
    • (2014) Nat. Rev. Genet. , vol.15 , pp. 259-271
    • Maze, I.1    Noh, K.M.2    Soshnev, A.A.3    Allis, C.D.4
  • 48
    • 2642544592 scopus 로고    scopus 로고
    • Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter
    • Métivier R., Penot G., Hübner M.R., Reid G., Brand H., Kos M., Gannon F. Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter. Cell 2003, 115:751-763.
    • (2003) Cell , vol.115 , pp. 751-763
    • Métivier, R.1    Penot, G.2    Hübner, M.R.3    Reid, G.4    Brand, H.5    Kos, M.6    Gannon, F.7
  • 50
    • 84856237597 scopus 로고    scopus 로고
    • Polycomb protein Ezh1 promotes RNA polymerase II elongation
    • Mousavi K., Zare H., Wang A.H., Sartorelli V. Polycomb protein Ezh1 promotes RNA polymerase II elongation. Mol. Cell 2012, 45:255-262.
    • (2012) Mol. Cell , vol.45 , pp. 255-262
    • Mousavi, K.1    Zare, H.2    Wang, A.H.3    Sartorelli, V.4
  • 52
    • 79958815889 scopus 로고    scopus 로고
    • Histone variant macroH2A confers resistance to nuclear reprogramming
    • Pasque V., Gillich A., Garrett N., Gurdon J.B. Histone variant macroH2A confers resistance to nuclear reprogramming. EMBO J. 2011, 30:2373-2387.
    • (2011) EMBO J. , vol.30 , pp. 2373-2387
    • Pasque, V.1    Gillich, A.2    Garrett, N.3    Gurdon, J.B.4
  • 53
    • 0026737922 scopus 로고
    • MacroH2A, a core histone containing a large nonhistone region
    • Pehrson J.R., Fried V.A. MacroH2A, a core histone containing a large nonhistone region. Science 1992, 257:1398-1400.
    • (1992) Science , vol.257 , pp. 1398-1400
    • Pehrson, J.R.1    Fried, V.A.2
  • 55
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: a flexible suite of utilities for comparing genomic features
    • Quinlan A.R., Hall I.M. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 2010, 26:841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 57
    • 0027402969 scopus 로고
    • Crystal structure of globular domain of histone H5 and its implications for nucleosome binding
    • Ramakrishnan V., Finch J.T., Graziano V., Lee P.L., Sweet R.M. Crystal structure of globular domain of histone H5 and its implications for nucleosome binding. Nature 1993, 362:219-223.
    • (1993) Nature , vol.362 , pp. 219-223
    • Ramakrishnan, V.1    Finch, J.T.2    Graziano, V.3    Lee, P.L.4    Sweet, R.M.5
  • 58
    • 0033568076 scopus 로고    scopus 로고
    • Messenger RNAs encoding mouse histone macroH2A1 isoforms are expressed at similar levels in male and female cells and result from alternative splicing
    • Rasmussen T.P., Huang T., Mastrangelo M.A., Loring J., Panning B., Jaenisch R. Messenger RNAs encoding mouse histone macroH2A1 isoforms are expressed at similar levels in male and female cells and result from alternative splicing. Nucleic Acids Res. 1999, 27:3685-3689.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 3685-3689
    • Rasmussen, T.P.1    Huang, T.2    Mastrangelo, M.A.3    Loring, J.4    Panning, B.5    Jaenisch, R.6
  • 60
    • 84878282462 scopus 로고    scopus 로고
    • Histone variants in pluripotency and disease
    • Skene P.J., Henikoff S. Histone variants in pluripotency and disease. Development 2013, 140:2513-2524.
    • (2013) Development , vol.140 , pp. 2513-2524
    • Skene, P.J.1    Henikoff, S.2
  • 61
    • 84937532893 scopus 로고    scopus 로고
    • Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming
    • Soufi A., Garcia M.F., Jaroszewicz A., Osman N., Pellegrini M., Zaret K.S. Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming. Cell 2015, 161:555-568.
    • (2015) Cell , vol.161 , pp. 555-568
    • Soufi, A.1    Garcia, M.F.2    Jaroszewicz, A.3    Osman, N.4    Pellegrini, M.5    Zaret, K.S.6
  • 63
    • 21644434750 scopus 로고    scopus 로고
    • The circuitry of a master switch: Myod and the regulation of skeletal muscle gene transcription
    • Tapscott S.J. The circuitry of a master switch: Myod and the regulation of skeletal muscle gene transcription. Development 2005, 132:2685-2695.
    • (2005) Development , vol.132 , pp. 2685-2695
    • Tapscott, S.J.1
  • 64
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • Trapnell C., Pachter L., Salzberg S.L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009, 25:1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 67
    • 0017759258 scopus 로고
    • Serial passaging and differentiation of myogenic cells isolated from dystrophic mouse muscle
    • Yaffe D., Saxel O. Serial passaging and differentiation of myogenic cells isolated from dystrophic mouse muscle. Nature 1977, 270:725-727.
    • (1977) Nature , vol.270 , pp. 725-727
    • Yaffe, D.1    Saxel, O.2
  • 68
    • 67650711619 scopus 로고    scopus 로고
    • A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
    • Zang C., Schones D.E., Zeng C., Cui K., Zhao K., Peng W. A clustering approach for identification of enriched domains from histone modification ChIP-Seq data. Bioinformatics 2009, 25:1952-1958.
    • (2009) Bioinformatics , vol.25 , pp. 1952-1958
    • Zang, C.1    Schones, D.E.2    Zeng, C.3    Cui, K.4    Zhao, K.5    Peng, W.6
  • 69
    • 80455144479 scopus 로고    scopus 로고
    • Pioneer transcription factors: establishing competence for gene expression
    • Zaret K.S., Carroll J.S. Pioneer transcription factors: establishing competence for gene expression. Genes Dev. 2011, 25:2227-2241.
    • (2011) Genes Dev. , vol.25 , pp. 2227-2241
    • Zaret, K.S.1    Carroll, J.S.2
  • 70
    • 80051564877 scopus 로고    scopus 로고
    • Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions
    • Zentner G.E., Tesar P.J., Scacheri P.C. Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions. Genome Res. 2011, 21:1273-1283.
    • (2011) Genome Res. , vol.21 , pp. 1273-1283
    • Zentner, G.E.1    Tesar, P.J.2    Scacheri, P.C.3


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