-
1
-
-
0025040232
-
De novo design, expression, and characterization of Felix: A four-helix bundle protein of native-like sequence
-
M.H. Hecht, J.S. Richardson, D.C. Richardson, and R.C. Ogden De novo design, expression, and characterization of Felix: A four-helix bundle protein of native-like sequence Science 249 1990 884 891
-
(1990)
Science
, vol.249
, pp. 884-891
-
-
Hecht, M.H.1
Richardson, J.S.2
Richardson, D.C.3
Ogden, R.C.4
-
2
-
-
0023812695
-
Characterization of a helical protein designed from first principles
-
L. Regan, and W.F. DeGrado Characterization of a helical protein designed from first principles Science 241 1988 976 978
-
(1988)
Science
, vol.241
, pp. 976-978
-
-
Regan, L.1
DeGrado, W.F.2
-
3
-
-
0032553587
-
High-resolution protein design with backbone freedom
-
P.B. Harbury, J.J. Plecs, B. Tidor, T. Alber, and P.S. Kim High-resolution protein design with backbone freedom Science 282 1998 1462 1467
-
(1998)
Science
, vol.282
, pp. 1462-1467
-
-
Harbury, P.B.1
Plecs, J.J.2
Tidor, B.3
Alber, T.4
Kim, P.S.5
-
4
-
-
0344392714
-
Solution structure of a de novo protein from a designed combinatorial library
-
Y. Wei, S. Kim, D. Fela, J. Baum, and M.H. Hecht Solution structure of a de novo protein from a designed combinatorial library Proc. Natl. Acad. Sci. U. S. A. 100 2003 13270 13273
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 13270-13273
-
-
Wei, Y.1
Kim, S.2
Fela, D.3
Baum, J.4
Hecht, M.H.5
-
5
-
-
0345306764
-
Design of a novel globular protein fold with atomic-level accuracy
-
B. Kuhlman, G. Dantas, G.C. Ireton, G. Varani, B.L. Stoddard, and D. Baker Design of a novel globular protein fold with atomic-level accuracy Science 302 2003 1364 1368
-
(2003)
Science
, vol.302
, pp. 1364-1368
-
-
Kuhlman, B.1
Dantas, G.2
Ireton, G.C.3
Varani, G.4
Stoddard, B.L.5
Baker, D.6
-
6
-
-
84938211722
-
Computational de novo design of a four-helix bundle protein - DND-4HB
-
G.S. Murphy, B. Sathyamoorthy, B.S. Der, M.C. Machius, S.V. Pulavarti, T. Szyperski, and B. Kuhlman Computational de novo design of a four-helix bundle protein - DND-4HB Protein Sci. 24 2015 434 445
-
(2015)
Protein Sci.
, vol.24
, pp. 434-445
-
-
Murphy, G.S.1
Sathyamoorthy, B.2
Der, B.S.3
Machius, M.C.4
Pulavarti, S.V.5
Szyperski, T.6
Kuhlman, B.7
-
7
-
-
84868611622
-
Principles for designing ideal protein structures
-
N. Koga, R. Tatsumi-Koga, G. Liu, R. Xiao, T.B. Acton, G.T. Montelione, and D. Baker Principles for designing ideal protein structures Nature 491 2012 222 227
-
(2012)
Nature
, vol.491
, pp. 222-227
-
-
Koga, N.1
Tatsumi-Koga, R.2
Liu, G.3
Xiao, R.4
Acton, T.B.5
Montelione, G.T.6
Baker, D.7
-
8
-
-
84908235298
-
High thermodynamic stability of parametrically designed helical bundles
-
P.S. Huang, G. Oberdorfer, C. Xu, X.Y. Pei, B.L. Nannenga, J.M. Rogers, F. DiMaio, T. Gonen, B. Luisi, and D. Baker High thermodynamic stability of parametrically designed helical bundles Science 346 2014 481 485
-
(2014)
Science
, vol.346
, pp. 481-485
-
-
Huang, P.S.1
Oberdorfer, G.2
Xu, C.3
Pei, X.Y.4
Nannenga, B.L.5
Rogers, J.M.6
DiMaio, F.7
Gonen, T.8
Luisi, B.9
Baker, D.10
-
9
-
-
79956017135
-
Computational design of proteins targeting the conserved stem region of influenza hemagglutinin
-
S.J. Fleishman, T.A. Whitehead, D.C. Ekiert, C. Dreyfus, J.E. Corn, E.M. Strauch, I.A. Wilson, and D. Baker Computational design of proteins targeting the conserved stem region of influenza hemagglutinin Science 332 2011 816 821
-
(2011)
Science
, vol.332
, pp. 816-821
-
-
Fleishman, S.J.1
Whitehead, T.A.2
Ekiert, D.C.3
Dreyfus, C.4
Corn, J.E.5
Strauch, E.M.6
Wilson, I.A.7
Baker, D.8
-
10
-
-
43449098518
-
Kemp elimination catalysts by computational enzyme design
-
D. Rothlisberger, O. Khersonsky, A.M. Wollacott, L. Jiang, J. DeChancie, J. Betker, J.L. Gallaher, E.A. Althoff, A. Zanghellini, O. Dym, S. Albeck, K.N. Houk, D.S. Tawfik, and D. Baker Kemp elimination catalysts by computational enzyme design Nature 453 2008 190 195
-
(2008)
Nature
, vol.453
, pp. 190-195
-
-
Rothlisberger, D.1
Khersonsky, O.2
Wollacott, A.M.3
Jiang, L.4
DeChancie, J.5
Betker, J.6
Gallaher, J.L.7
Althoff, E.A.8
Zanghellini, A.9
Dym, O.10
Albeck, S.11
Houk, K.N.12
Tawfik, D.S.13
Baker, D.14
-
11
-
-
77954811495
-
Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction
-
J.B. Siegel, A. Zanghellini, H.M. Lovick, G. Kiss, A.R. Lambert, J.L. St Clair, J.L. Gallaher, D. Hilvert, M.H. Gelb, B.L. Stoddard, K.N. Houk, F.E. Michael, and D. Baker Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction Science 329 2010 309 313
-
(2010)
Science
, vol.329
, pp. 309-313
-
-
Siegel, J.B.1
Zanghellini, A.2
Lovick, H.M.3
Kiss, G.4
Lambert, A.R.5
St Clair, J.L.6
Gallaher, J.L.7
Hilvert, D.8
Gelb, M.H.9
Stoddard, B.L.10
Houk, K.N.11
Michael, F.E.12
Baker, D.13
-
12
-
-
40449116114
-
De novo computational design of retro-aldol enzymes
-
L. Jiang, E.A. Althoff, F.R. Clemente, L. Doyle, D. Rothlisberger, A. Zanghellini, J.L. Gallaher, J.L. Betker, F. Tanaka, C.F. Barbas III, D. Hilvert, K.N. Houk, B.L. Stoddard, and D. Baker De novo computational design of retro-aldol enzymes Science 319 2008 1387 1391
-
(2008)
Science
, vol.319
, pp. 1387-1391
-
-
Jiang, L.1
Althoff, E.A.2
Clemente, F.R.3
Doyle, L.4
Rothlisberger, D.5
Zanghellini, A.6
Gallaher, J.L.7
Betker, J.L.8
Tanaka, F.9
Barbas, C.F.10
Hilvert, D.11
Houk, K.N.12
Stoddard, B.L.13
Baker, D.14
-
13
-
-
0001266102
-
A three-dimensional model of the myoglobin molecule obtained by X-ray analysis
-
J.C. Kendrew, G. Bodo, H.M. Dintzis, R.G. Parrish, H. Wyckoff, and D.C. Phillips A three-dimensional model of the myoglobin molecule obtained by X-ray analysis Nature 181 1958 662 666
-
(1958)
Nature
, vol.181
, pp. 662-666
-
-
Kendrew, J.C.1
Bodo, G.2
Dintzis, H.M.3
Parrish, R.G.4
Wyckoff, H.5
Phillips, D.C.6
-
14
-
-
84925114160
-
Intrinsically disordered proteins in cellular signalling and regulation
-
P.E. Wright, and H.J. Dyson Intrinsically disordered proteins in cellular signalling and regulation Nat. Rev. Mol. Cell Biol. 16 2015 18 29
-
(2015)
Nat. Rev. Mol. Cell Biol.
, vol.16
, pp. 18-29
-
-
Wright, P.E.1
Dyson, H.J.2
-
15
-
-
84902160274
-
Intrinsically disordered proteins and intrinsically disordered protein regions
-
C.J. Oldfield, and A.K. Dunker Intrinsically disordered proteins and intrinsically disordered protein regions Annu. Rev. Biochem. 83 2014 553 584
-
(2014)
Annu. Rev. Biochem.
, vol.83
, pp. 553-584
-
-
Oldfield, C.J.1
Dunker, A.K.2
-
16
-
-
79251539227
-
De novo designed proteins from a library of artificial sequences function in Escherichia coli and enable cell growth
-
M.A. Fisher, K.L. McKinley, L.H. Bradley, S.R. Viola, and M.H. Hecht De novo designed proteins from a library of artificial sequences function in Escherichia coli and enable cell growth PLoS One 6 2011 e15364
-
(2011)
PLoS One
, vol.6
, pp. e15364
-
-
Fisher, M.A.1
McKinley, K.L.2
Bradley, L.H.3
Viola, S.R.4
Hecht, M.H.5
-
17
-
-
18844393705
-
An intein-based genetic selection allows the construction of a high-quality library of binary patterned de novo protein sequences
-
L.H. Bradley, R.E. Kleiner, A.F. Wang, M.H. Hecht, and D.W. Wood An intein-based genetic selection allows the construction of a high-quality library of binary patterned de novo protein sequences Protein Eng. Des. Sel. 18 2005 201 207
-
(2005)
Protein Eng. Des. Sel.
, vol.18
, pp. 201-207
-
-
Bradley, L.H.1
Kleiner, R.E.2
Wang, A.F.3
Hecht, M.H.4
Wood, D.W.5
-
18
-
-
67650022871
-
Cofactor binding and enzymatic activity in an unevolved superfamily of de novo designed 4-helix bundle proteins
-
S.C. Patel, L.H. Bradley, S.P. Jinadasa, and M.H. Hecht Cofactor binding and enzymatic activity in an unevolved superfamily of de novo designed 4-helix bundle proteins Protein Sci. 18 2009 1388 1400
-
(2009)
Protein Sci.
, vol.18
, pp. 1388-1400
-
-
Patel, S.C.1
Bradley, L.H.2
Jinadasa, S.P.3
Hecht, M.H.4
-
19
-
-
23444436172
-
Protein design by binary patterning of polar and nonpolar amino acids
-
S. Kamtekar, J.M. Schiffer, H. Xiong, J.M. Babik, and M.H. Hecht Protein design by binary patterning of polar and nonpolar amino acids Science 262 1993 1680 1685
-
(1993)
Science
, vol.262
, pp. 1680-1685
-
-
Kamtekar, S.1
Schiffer, J.M.2
Xiong, H.3
Babik, J.M.4
Hecht, M.H.5
-
20
-
-
12244272132
-
Stably folded de novo proteins from a designed combinatorial library
-
Y. Wei, T. Liu, S.L. Sazinsky, D.A. Moffet, I. Pelczer, and M.H. Hecht Stably folded de novo proteins from a designed combinatorial library Protein Sci. 12 2003 92 102
-
(2003)
Protein Sci.
, vol.12
, pp. 92-102
-
-
Wei, Y.1
Liu, T.2
Sazinsky, S.L.3
Moffet, D.A.4
Pelczer, I.5
Hecht, M.H.6
-
21
-
-
43049128515
-
Structure and dynamics of de novo proteins from a designed superfamily of 4-helix bundles
-
A. Go, S. Kim, J. Baum, and M.H. Hecht Structure and dynamics of de novo proteins from a designed superfamily of 4-helix bundles Protein Sci. 17 2008 821 832
-
(2008)
Protein Sci.
, vol.17
, pp. 821-832
-
-
Go, A.1
Kim, S.2
Baum, J.3
Hecht, M.H.4
-
22
-
-
84862297294
-
Domain-swapped dimeric structure of a stable and functional de novo four-helix bundle protein, WA20
-
R. Arai, N. Kobayashi, A. Kimura, T. Sato, K. Matsuo, A.F. Wang, J.M. Platt, L.H. Bradley, and M.H. Hecht Domain-swapped dimeric structure of a stable and functional de novo four-helix bundle protein, WA20 J. Phys. Chem. B 116 2012 6789 6797
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 6789-6797
-
-
Arai, R.1
Kobayashi, N.2
Kimura, A.3
Sato, T.4
Matsuo, K.5
Wang, A.F.6
Platt, J.M.7
Bradley, L.H.8
Hecht, M.H.9
-
23
-
-
84865762571
-
Proteins from an unevolved library of de novo designed sequences bind a range of small molecules
-
I. Cherny, M. Korolev, A.N. Koehler, and M.H. Hecht Proteins from an unevolved library of de novo designed sequences bind a range of small molecules ACS Synth. Biol. 1 2012 130 138
-
(2012)
ACS Synth. Biol.
, vol.1
, pp. 130-138
-
-
Cherny, I.1
Korolev, M.2
Koehler, A.N.3
Hecht, M.H.4
-
24
-
-
24944493938
-
Toward high-resolution de novo structure prediction for small proteins
-
P. Bradley, K.M. Misura, and D. Baker Toward high-resolution de novo structure prediction for small proteins Science 309 2005 1868 1871
-
(2005)
Science
, vol.309
, pp. 1868-1871
-
-
Bradley, P.1
Misura, K.M.2
Baker, D.3
-
25
-
-
73149111493
-
Simultaneous prediction of protein folding and docking at high resolution
-
R. Das, I. Andre, Y. Shen, Y. Wu, A. Lemak, S. Bansal, C.H. Arrowsmith, T. Szyperski, and D. Baker Simultaneous prediction of protein folding and docking at high resolution Proc. Natl. Acad. Sci. U. S. A. 106 2009 18978 18983
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 18978-18983
-
-
Das, R.1
Andre, I.2
Shen, Y.3
Wu, Y.4
Lemak, A.5
Bansal, S.6
Arrowsmith, C.H.7
Szyperski, T.8
Baker, D.9
-
26
-
-
0021719074
-
Synthesis of a model protein of defined secondary and quaternary structure. Effect of chain length on the stabilization and formation of two-stranded alpha-helical coiled-coils
-
S.Y. Lau, A.K. Taneja, and R.S. Hodges Synthesis of a model protein of defined secondary and quaternary structure. Effect of chain length on the stabilization and formation of two-stranded alpha-helical coiled-coils J. Biol. Chem. 259 1984 13253 13261
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 13253-13261
-
-
Lau, S.Y.1
Taneja, A.K.2
Hodges, R.S.3
-
27
-
-
77649270954
-
Size and shape of protein molecules at the nanometer level determined by sedimentation, gel filtration, and electron microscopy
-
H.P. Erickson Size and shape of protein molecules at the nanometer level determined by sedimentation, gel filtration, and electron microscopy Biol. Proced. Online 11 2009 32 51
-
(2009)
Biol. Proced. Online
, vol.11
, pp. 32-51
-
-
Erickson, H.P.1
-
28
-
-
4444260365
-
An enzymatic molten globule: Efficient coupling of folding and catalysis
-
K. Vamvaca, B. Vogeli, P. Kast, K. Pervushin, and D. Hilvert An enzymatic molten globule: Efficient coupling of folding and catalysis Proc. Natl. Acad. Sci. U. S. A. 101 2004 12860 12864
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 12860-12864
-
-
Vamvaca, K.1
Vogeli, B.2
Kast, P.3
Pervushin, K.4
Hilvert, D.5
-
29
-
-
0017272554
-
Enzyme recruitment in evolution of new function
-
R.A. Jensen Enzyme recruitment in evolution of new function Annu. Rev. Microbiol. 30 1976 409 425
-
(1976)
Annu. Rev. Microbiol.
, vol.30
, pp. 409-425
-
-
Jensen, R.A.1
-
30
-
-
84928897102
-
Divergent evolution of a bifunctional de novo protein
-
B.A. Smith, A.E. Mularz, and M.H. Hecht Divergent evolution of a bifunctional de novo protein Protein Sci. 24 2015 246 252
-
(2015)
Protein Sci.
, vol.24
, pp. 246-252
-
-
Smith, B.A.1
Mularz, A.E.2
Hecht, M.H.3
-
31
-
-
0026951903
-
Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions
-
M. Piotto, V. Saudek, and V. Sklenar Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions J. Biomol. NMR 2 1992 661 665
-
(1992)
J. Biomol. NMR
, vol.2
, pp. 661-665
-
-
Piotto, M.1
Saudek, V.2
Sklenar, V.3
-
32
-
-
19444382397
-
The CCPN data model for NMR spectroscopy: Development of a software pipeline
-
W.F. Vranken, W. Boucher, T.J. Stevens, R.H. Fogh, A. Pajon, M. Llinas, E.L. Ulrich, J.L. Markley, J. Ionides, and E.D. Laue The CCPN data model for NMR spectroscopy: Development of a software pipeline Proteins 59 2005 687 696
-
(2005)
Proteins
, vol.59
, pp. 687-696
-
-
Vranken, W.F.1
Boucher, W.2
Stevens, T.J.3
Fogh, R.H.4
Pajon, A.5
Llinas, M.6
Ulrich, E.L.7
Markley, J.L.8
Ionides, J.9
Laue, E.D.10
|