-
1
-
-
77951974177
-
Structural aspects of messenger RNA reading frame maintenance by the ribosome
-
Jenner, L. B., Demeshkina, N., Yusupova, G. & Yusupov, M. Structural aspects of messenger RNA reading frame maintenance by the ribosome. Nature Struct. Mol. Biol. 17, 555-560 (2010).
-
(2010)
Nature Struct. Mol. Biol.
, vol.17
, pp. 555-560
-
-
Jenner, L.B.1
Demeshkina, N.2
Yusupova, G.3
Yusupov, M.4
-
2
-
-
84884916953
-
Frameshifting dynamics
-
Tinoco, I., Jr, Kim, H. K. & Yan, S. Frameshifting dynamics. Biopolymers 99, 1147-1166 (2013).
-
(2013)
Biopolymers
, vol.99
, pp. 1147-1166
-
-
Tinoco, I.1
Kim Jr., H.K.2
Yan, S.3
-
3
-
-
0025355475
-
Translational frameshifting generates the gamma subunit of DNA polymerase III holoenzyme
-
Tsuchihashi, Z. & Kornberg, A. Translational frameshifting generates the gamma subunit of DNA polymerase III holoenzyme. Proc. Natl Acad. Sci. USA 87, 2516-2520 (1990).
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 2516-2520
-
-
Tsuchihashi, Z.1
Kornberg, A.2
-
4
-
-
0037316485
-
The 9-Åsolution: How mRNA pseudoknots promote efficient programmed 21 ribosomal frameshifting
-
Plant, E. P. et al. The 9-Åsolution: how mRNA pseudoknots promote efficient programmed 21 ribosomal frameshifting. RNA 9, 168-174 (2003).
-
(2003)
RNA
, vol.9
, pp. 168-174
-
-
Plant, E.P.1
-
5
-
-
1642540279
-
P-site tRNA is a crucial initiator of ribosomal frameshifting
-
Baranov, P. V., Gesteland, R. F. & Atkins, J. F. P-site tRNA is a crucial initiator of ribosomal frameshifting. RNA 10, 221-230 (2004).
-
(2004)
RNA
, vol.10
, pp. 221-230
-
-
Baranov, P.V.1
Gesteland, R.F.2
Atkins, J.F.3
-
6
-
-
0029073174
-
Prokaryotic ribosomes recode the HIV-1 gag-pol-1 frameshift sequence by an E/P site post-translocation simultaneous slippage mechanism
-
Horsfield, J. A., Wilson, D. N., Mannering, S. A., Adamski, F. M. & Tate, W. P. Prokaryotic ribosomes recode the HIV-1 gag-pol-1 frameshift sequence by an E/P site post-translocation simultaneous slippage mechanism. Nucleic Acids Res. 23, 1487-1494 (1995).
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 1487-1494
-
-
Horsfield, J.A.1
Wilson, D.N.2
Mannering, S.A.3
Adamski, F.M.4
Tate, W.P.5
-
7
-
-
0033984933
-
Kinetics of ribosomal pausing during programmed21translational frameshifting
-
Lopinski, J. D., Dinman, J. D. & Bruenn, J. A. Kinetics of ribosomal pausing during programmed21translational frameshifting.Mol.Cell. Biol.20, 1095-1103(2000).
-
(2000)
Mol.Cell Biol.
, vol.20
, pp. 1095-1103
-
-
Lopinski, J.D.1
Dinman, J.D.2
Bruenn, J.A.3
-
8
-
-
0024277965
-
Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region
-
Jacks, T., Madhani, H. D., Masiarz, F. R. & Varmus, H. E. Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region. Cell 55, 447-458 (1988).
-
(1988)
Cell
, vol.55
, pp. 447-458
-
-
Jacks, T.1
Madhani, H.D.2
Masiarz, F.R.3
Varmus, H.E.4
-
9
-
-
33646557329
-
A mechanical explanationofRNApseudoknot functionin programmedribosomal frameshifting
-
Namy, O., Moran, S. J., Stuart, D. I., Gilbert, R. J. & Brierley, I. A mechanical explanationofRNApseudoknot functionin programmedribosomal frameshifting. Nature 441, 244-247 (2006).
-
(2006)
Nature
, vol.441
, pp. 244-247
-
-
Namy, O.1
Moran, S.J.2
Stuart, D.I.3
Gilbert, R.J.4
Brierley, I.5
-
10
-
-
0024766985
-
Coli ribosomes re-phase onretroviral frameshift signals at rates ranging from2to50percent
-
Weiss, R. B., Dunn, D. M., Shuh, M., Atkins, J. F. & Gesteland, R. F. E. coli ribosomes re-phase onretroviral frameshift signals at rates ranging from2to50percent.New Biol. 1, 159-169 (1989).
-
(1989)
New Biol.
, vol.1
, pp. 159-169
-
-
Weiss, R.B.1
Dunn, D.M.2
Shuh, M.3
Atkins, J.F.4
Gesteland, R.F.E.5
-
11
-
-
34548768192
-
The three transfer RNAs occupying the A, P and e sites on the ribosome are involved in viral programmed 21 ribosomal frameshift
-
Léger, M., Dulude, D., Steinberg, S. V. & Brakier-Gingras, L. The three transfer RNAs occupying the A, P and E sites on the ribosome are involved in viral programmed 21 ribosomal frameshift. Nucleic Acids Res. 35, 5581-5592 (2007).
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 5581-5592
-
-
Léger, M.1
Dulude, D.2
Steinberg, S.V.3
Brakier-Gingras, L.4
-
12
-
-
0031559590
-
Structural probingandmutagenic analysis of the stem-loop required for Escherichia coli dnaX ribosomal frameshifting: Programmed efficiency of 50%
-
Larsen, B., Gesteland, R. F. & Atkins, J. F.Structural probingandmutagenic analysis of the stem-loop required for Escherichia coli dnaX ribosomal frameshifting: programmed efficiency of 50%. J. Mol. Biol. 271, 47-60 (1997).
-
(1997)
J. Mol. Biol.
, vol.271
, pp. 47-60
-
-
Larsen, B.1
Gesteland, R.F.2
Atkins, J.F.3
-
13
-
-
0028007434
-
RRNA-mRNA base pairing stimulates a programmed21 ribosomal frameshift
-
Larsen, B., Wills, N. M., Gesteland, R. F. & Atkins, J. F. rRNA-mRNA base pairing stimulates a programmed21 ribosomal frameshift. J. Bacteriol. 176, 6842-6851 (1994).
-
(1994)
J. Bacteriol.
, vol.176
, pp. 6842-6851
-
-
Larsen, B.1
Wills, N.M.2
Gesteland, R.F.3
Atkins, J.F.4
-
14
-
-
84892574212
-
High-throughput platform for real-time monitoring of biological processes by multicolor single-molecule fluorescence
-
Chen, J. et al. High-throughput platform for real-time monitoring of biological processes by multicolor single-molecule fluorescence. Proc. Natl Acad. Sci. USA 111, 664-669 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 664-669
-
-
Chen, J.1
-
15
-
-
84898802217
-
A frameshifting stimulatory stem loop destabilizes the hybrid state and impedes ribosomal translocation
-
Kim, H. K. et al. A frameshifting stimulatory stem loop destabilizes the hybrid state and impedes ribosomal translocation. Proc. Natl Acad. Sci. USA 111, 5538-5543 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 5538-5543
-
-
Kim, H.K.1
-
16
-
-
84878909556
-
Coordinated conformational and compositional dynamics drive ribosome translocation
-
Chen, J., Petrov, A., Tsai, A., O'Leary, S. E. & Puglisi, J. D.Coordinated conformational and compositional dynamics drive ribosome translocation. Nature Struct. Mol. Biol. 20, 718-727 (2013).
-
(2013)
Nature Struct. Mol. Biol.
, vol.20
, pp. 718-727
-
-
Chen, J.1
Petrov, A.2
Tsai, A.3
O'leary, S.E.4
Puglisi, J.D.5
-
17
-
-
84859334880
-
Nonfluorescent quenchers to correlate single-molecule conformational and compositional dynamics
-
Chen, J., Tsai, A., Petrov, A. & Puglisi, J. D. Nonfluorescent quenchers to correlate single-molecule conformational and compositional dynamics. J. Am. Chem. Soc. 134, 5734-5737 (2012).
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 5734-5737
-
-
Chen, J.1
Tsai, A.2
Petrov, A.3
Puglisi, J.D.4
-
18
-
-
77954383845
-
Following the intersubunit conformation of the ribosome during translation in real time
-
Aitken, C. E. & Puglisi, J. D. Following the intersubunit conformation of the ribosome during translation in real time. Nature Struct. Mol. Biol. 17, 793-800 (2010).
-
(2010)
Nature Struct. Mol. Biol.
, vol.17
, pp. 793-800
-
-
Aitken, C.E.1
Puglisi, J.D.2
-
19
-
-
0026594057
-
Sequence requirements for efficient translational frameshifting in the Escherichia coli dnaX gene and the role of an unstable interaction between tRNALys and an AAG lysine codon
-
Tsuchihashi, Z. & Brown, P. O. Sequence requirements for efficient translational frameshifting in the Escherichia coli dnaX gene and the role of an unstable interaction between tRNALys and an AAG lysine codon. Genes Dev. 6, 511-519 (1992).
-
(1992)
Genes Dev.
, vol.6
, pp. 511-519
-
-
Tsuchihashi, Z.1
Brown, P.O.2
-
20
-
-
0036203203
-
Influence of the stacking potential of the base 39 of tandem shift codons on 21 ribosomal frameshifting used for gene expression
-
Bertrand, C., Prere, M. F., Gesteland, R. F., Atkins, J. F. & Fayet, O. Influence of the stacking potential of the base 39 of tandem shift codons on 21 ribosomal frameshifting used for gene expression. RNA 8, 16-28 (2002).
-
(2002)
RNA
, vol.8
, pp. 16-28
-
-
Bertrand, C.1
Prere, M.F.2
Gesteland, R.F.3
Atkins, J.F.4
Fayet, O.5
-
21
-
-
84862963791
-
Genetic code translation displays a linear trade-off between efficiency and accuracy of tRNA selection
-
Johansson, M., Zhang, J. & Ehrenberg, M. Genetic code translation displays a linear trade-off between efficiency and accuracy of tRNA selection. Proc. Natl Acad. Sci. USA 109, 131-136 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 131-136
-
-
Johansson, M.1
Zhang, J.2
Ehrenberg, M.3
-
22
-
-
84879663355
-
Elongation factorG bound to the ribosome in an intermediate state of translocation
-
Tourigny, D. S., Fernandez, I. S., Kelley, A. C. & Ramakrishnan, V. Elongation factorG bound to the ribosome in an intermediate state of translocation. Science 340, 1235490 (2013).
-
(2013)
Science
, vol.340
, pp. 1235490
-
-
Tourigny, D.S.1
Fernandez, I.S.2
Kelley, A.C.3
Ramakrishnan, V.4
-
23
-
-
0023661368
-
Mutants of elongation factor Tu promote ribosomal frameshifting and nonsense readthrough
-
Hughes, D., Atkins, J. F. & Thompson, S. Mutants of elongation factor Tu promote ribosomal frameshifting and nonsense readthrough. EMBO J. 6, 4235-4239 (1987).
-
(1987)
EMBO J.
, vol.6
, pp. 4235-4239
-
-
Hughes, D.1
Atkins, J.F.2
Thompson, S.3
-
24
-
-
79959676389
-
The ribosome uses two active mechanisms to unwind messenger RNA during translation
-
Qu, X. et al. The ribosome uses two active mechanisms to unwind messenger RNA during translation. Nature 475, 118-121 (2011).
-
(2011)
Nature
, vol.475
, pp. 118-121
-
-
Qu, X.1
-
25
-
-
79959742673
-
Interaction strengths between the ribosome and tRNA at various steps of translocation
-
Liu, C. Y., Qureshi, M. T. & Lee, T. H. Interaction strengths between the ribosome and tRNA at various steps of translocation. Biophys. J. 100, 2201-2208 (2011).
-
(2011)
Biophys. J.
, vol.100
, pp. 2201-2208
-
-
Liu, C.Y.1
Qureshi, M.T.2
Lee, T.H.3
-
26
-
-
0037963475
-
Locking and unlocking of ribosomal motions
-
Valle, M. et al. Locking and unlocking of ribosomal motions. Cell 114, 123-134 (2003).
-
(2003)
Cell
, vol.114
, pp. 123-134
-
-
Valle, M.1
-
27
-
-
84903150358
-
StructuredmRNAinduces the ribosomeinto a hyper-rotated state
-
Qin, P., Yu, D., Zuo, X. & Cornish, P. V. StructuredmRNAinduces the ribosomeinto a hyper-rotated state. EMBO Rep. 15, 185-190 (2014).
-
(2014)
EMBO Rep.
, vol.15
, pp. 185-190
-
-
Qin, P.1
Yu, D.2
Zuo, X.3
Cornish, P.V.4
-
28
-
-
0023870815
-
Characterization of ribosomal frameshifting in HIV-1 gag-pol expression
-
Jacks, T. et al. Characterization of ribosomal frameshifting in HIV-1 gag-pol expression. Nature 331, 280-283 (1988).
-
(1988)
Nature
, vol.331
, pp. 280-283
-
-
Jacks, T.1
-
29
-
-
78651274466
-
The many paths to frameshifting: Kinetic modelling and analysis of the effects of different elongation steps on programmed -1 ribosomal frameshifting
-
Liao, P. Y., Choi, Y. S., Dinman, J. D. & Lee, K. H. The many paths to frameshifting: kinetic modelling and analysis of the effects of different elongation steps on programmed -1 ribosomal frameshifting. Nucleic Acids Res. 39, 300-312 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 300-312
-
-
Liao, P.Y.1
Choi, Y.S.2
Dinman, J.D.3
Lee, K.H.4
-
30
-
-
77951107295
-
Real-time tRNA transit on single translating ribosomes at codon resolution
-
Uemura, S. et al. Real-time tRNA transit on single translating ribosomes at codon resolution. Nature 464, 1012-1017 (2010).
-
(2010)
Nature
, vol.464
, pp. 1012-1017
-
-
Uemura, S.1
-
31
-
-
55749099506
-
Irreversible chemical steps control intersubunit dynamics during translation
-
Marshall, R. A., Dorywalska, M. & Puglisi, J. D. Irreversible chemical steps control intersubunit dynamics during translation. Proc. Natl Acad. Sci. USA 105, 15364-15369 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 15364-15369
-
-
Marshall, R.A.1
Dorywalska, M.2
Puglisi, J.D.3
-
32
-
-
13744257300
-
Site-specific labeling of the ribosome for single-molecule spectroscopy
-
Dorywalska, M. et al. Site-specific labeling of the ribosome for single-molecule spectroscopy. Nucleic Acids Res. 33, 182-189 (2005).
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 182-189
-
-
Dorywalska, M.1
-
33
-
-
4444313551
-
TRNAdynamics on the ribosome during translation
-
Blanchard, S. C., Kim, H. D., Gonzalez, R. L. Jr, Puglisi, J. D. & Chu, S. tRNAdynamics on the ribosome during translation. Proc. Natl Acad. Sci. USA 101, 12893-12898 (2004).
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 12893-12898
-
-
Blanchard, S.C.1
Kim, H.D.2
Gonzalez Jr., R.L.3
Puglisi, J.D.4
Chu, S.5
-
34
-
-
41449108157
-
An oxygen scavenging system for improvement of dye stability in single-molecule fluorescence experiments
-
Aitken, C. E., Marshall, R. A. & Puglisi, J. D. An oxygen scavenging system for improvement of dye stability in single-molecule fluorescence experiments. Biophys. J. 94, 1826-1835 (2008).
-
(2008)
Biophys. J.
, vol.94
, pp. 1826-1835
-
-
Aitken, C.E.1
Marshall, R.A.2
Puglisi, J.D.3
-
35
-
-
0034691576
-
A ratchet-like inter-subunit reorganization of the ribosome during translocation
-
Frank, J. & Agrawal, R. K. A ratchet-like inter-subunit reorganization of the ribosome during translocation. Nature 406, 318-322 (2000).
-
(2000)
Nature
, vol.406
, pp. 318-322
-
-
Frank, J.1
Agrawal, R.K.2
-
36
-
-
54049116765
-
Visualization of the hybrid state of tRNAbinding promoted by spontaneous ratcheting of the ribosome
-
Agirrezabala, X. et al. Visualization of the hybrid state of tRNAbinding promoted by spontaneous ratcheting of the ribosome. Mol. Cell 32, 190-197 (2008).
-
(2008)
Mol. Cell
, vol.32
, pp. 190-197
-
-
Agirrezabala, X.1
-
37
-
-
33847051154
-
Identification of two distinct hybrid state intermediates on the ribosome
-
Munro, J. B., Altman, R. B., O'Connor, N. & Blanchard, S. C. Identification of two distinct hybrid state intermediates on the ribosome. Mol. Cell25, 505-517(2007).
-
(2007)
Mol. Cell
, vol.25
, pp. 505-517
-
-
Munro, J.B.1
Altman, R.B.2
O'connor, N.3
Blanchard, S.C.4
-
38
-
-
4744365694
-
TRNA selection and kinetic proofreading in translation
-
Blanchard, S. C., Gonzalez, R. L., Kim, H. D., Chu, S. & Puglisi, J. D. tRNA selection and kinetic proofreading in translation. Nature Struct. Mol. Biol. 11, 1008-1014 (2004).
-
(2004)
Nature Struct. Mol. Biol.
, vol.11
, pp. 1008-1014
-
-
Blanchard, S.C.1
Gonzalez, R.L.2
Kim, H.D.3
Chu, S.4
Puglisi, J.D.5
-
39
-
-
0024458904
-
Intermediate states in the movement of transfer RNA in the ribosome
-
Moazed, D. & Noller, H. F. Intermediate states in the movement of transfer RNA in the ribosome. Nature 342, 142-148 (1989).
-
(1989)
Nature
, vol.342
, pp. 142-148
-
-
Moazed, D.1
Noller, H.F.2
-
40
-
-
44449125068
-
Spontaneous intersubunit rotation in single ribosomes
-
Cornish, P. V., Ermolenko, D. N., Noller, H. F. & Ha, T. Spontaneous intersubunit rotation in single ribosomes. Mol. Cell 30, 578-588 (2008).
-
(2008)
Mol. Cell
, vol.30
, pp. 578-588
-
-
Cornish, P.V.1
Ermolenko, D.N.2
Noller, H.F.3
Ha, T.4
-
41
-
-
67649646602
-
GTPhydrolysis by IF2 guides progression of the ribosome into elongation
-
Marshall, R. A., Aitken, C. E. & Puglisi, J. D.GTPhydrolysis by IF2 guides progression of the ribosome into elongation. Mol. Cell 35, 37-47 (2009).
-
(2009)
Mol. Cell
, vol.35
, pp. 37-47
-
-
Marshall, R.A.1
Aitken, C.E.2
Puglisi, J.D.3
-
42
-
-
41149155366
-
Following translation by single ribosomes one codon at a time
-
Wen, J. D. et al. Following translation by single ribosomes one codon at a time. Nature 452, 598-603 (2008).
-
(2008)
Nature
, vol.452
, pp. 598-603
-
-
Wen, J.D.1
-
43
-
-
84860231100
-
The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria
-
Li, G. W., Oh, E. & Weissman, J. S. The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria. Nature 484, 538-541 (2012).
-
(2012)
Nature
, vol.484
, pp. 538-541
-
-
Li, G.W.1
Oh, E.2
Weissman, J.S.3
|