Principles of translational control: An overview

Cold Spring Harbor Perspectives in Biology

Volumn 4, Issue 12, 2012, Pages

  Hershey, John W B ^a   Sonenberg, Nahum ^b   Mathews, Michael B ^c  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b MCGILL UNIVERSITY   (Canada)

^c RUTGERS NEW JERSEY MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA;

ARTICLE; BACTERIAL PHENOMENA AND FUNCTIONS; BIOLOGICAL MODEL; EUKARYOTIC CELL; GENE EXPRESSION REGULATION; HUMAN; METABOLISM; PHYSIOLOGY; PROTEIN SYNTHESIS;

BACTERIAL PHYSIOLOGICAL PHENOMENA; EUKARYOTIC CELLS; GENE EXPRESSION REGULATION; HUMANS; MICRORNAS; MODELS, BIOLOGICAL; PROTEIN BIOSYNTHESIS;

EID: 84870734901     PISSN: None     EISSN: 19430264     Source Type: Journal    
DOI: 10.1101/cshperspect.a009829     Document Type: Article

References (56)

1. Atkins J, Gesteland R. 2002. The 22nd amino acid. Science 296: 1409-1410.
2. Benham AM. 2012. Protein secretion and the endoplasmic reticulum. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a012872.
3. Ben-Shem A, de Loubresse N, Melnikov S, Jenner L, Yusupova G, Yusupov M. 2011. The structure of the eukaryotic ribosome at 3.0 A ° resolution. Science 334: 1524-1529.
4. Braun JE, Huntzinger E, Izaurralde E. 2012. A molecular link between miRISCs and deadenylases provides new insight into the mechanism of gene silencing by micro- RNAs. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a012328.
5. Cabrita DL, Dobson CM, Christodoulou J. 2010. Protein folding on the ribosome.Curr Opin Struct Biol 20: 33-45.
6. Cakmakci N, Lerner R, Wagner E, Zheng L, Marzluff W. 2008. SLIP1, a factor required for activation of histone mRNAtranslation by the stem-loop binding protein. Mol Cell Biol 28: 1182-1194.
7. Chao JA, Yoon YJ, Singer RH. 2012. Imaging translation in single cells using fluorescent microscopy. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a012310.
8. Cruz J, Westhof E. 2011. Sequence-based identification of 3D structural modules in RNA with RMDetect. Nat Methods 8: 513-521.
9. Darnell J, Richter J. 2012. Cytoplasmic RNA binding proteins and the control of complex brain function. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect. a012344.
10. Decker CJ, Parker R. 2012. P bodies and stress granules and their possible roles in the control of translation and mRNA degradation. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a012286.
11. Dever TE, Green R. 2012. The elongation, termination, and recycling phases of translation in eukaryotes. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a013706.
12. Dinman J, Berry M. 2007. Regulation of Termination and Recoding. In Translational control in biology and medicine (ed. Mathews MB, Sonenberg N, Hershey JWB), pp. 625-654. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
13. Dmitriev S, Terenin I, Andreev D, Ivanov P, Dunaevsky J, Merrick W, Shatsky I. 2010. GTP-independent tRNA delivery to the ribosomal P-site by a novel eukaryotic translation factor. J Biol Chem 285: 26779-26787.
14. Elfakess R, Sinvani H, Haimov O, Svitkin Y, Sonenberg N, Dikstein R. 2011.Unique translation initiation ofmRNAs containing TISU element. Nucleic Acids Res 39: 7598-7609.
15. Fabian M, Mathonnet G, Sundermeier T, Mathys H, Zipprich J, Svitkin Y, Rivas F, Jinek M, Wohlschlegel J, Doudna J, et al. 2009.Mammalian miRNA RISC recruits CAP1 and PABP to affect PABP-dependent deadenylation. Mol Cell 35: 868-880.
16. Fan H, Penman S. 1970. Regulation of protein synthesis in mammalian cells. II. Inhibition of protein synthesis at the level of initiation during mitosis. JMol Biol 50: 655-670.
17. Gebauer F, Preiss T, Hentze MW. 2012. From cis-regulatory elements to complex RNPs and back. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a012245.
18. Henderson A, Hershey J. 2011. The role of eIF5A in protein synthesis. Cell Cycle 10: 3617-3618.
19. Hinnebusch AG, Lorsch JR. 2012. The mechanism of eukaryotic translation initiation: New insights and challengs. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a011544.
20. Ingolia N, Ghaemmaghami S, Newman J, Weissman J. 2009. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324: 218-223.
21. Ingolia N, Lareau L, Weissman J. 2011. Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 147: 789-802.
22. Jackson R. 2012. The current status of vertebrate cellular mRNA IRESs. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a011569.
23. Klinge S, Voigts-Hoffmann F, Leibundgut M, Arpagaus S, Ban N. 2011. Crystal structure of the eukaryotic 60S ribosomal subunit in complex with initiation factor 6. Science 334: 941-948.
24. Komar A, Gross S, Barth-Baus D, Strachen R, Hensold J, Goss Kinzy T, Merrick W. 2005. Novel characteristics of the biological properties of the yeast Saccharomyces cerevisiae eukaryotic initiation factor 2A. J Biol Chem 280: 15601-15611.
25. Lai M, Lee Y, Tarn W. 2008. The DEAD-box RNA helicase DDX3 associates with export messenger ribonucleoproteins as well as tip-associated protein and participates in translational control. Mol Biol Cell 19: 3847-3858.
26. Larsson O, Tian B, Sonenberg N. 2012. The genome-wide landscape of translational control. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a012302.
27. Lasko P. 2012. mRNA localization and translational control in Drosophila. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a012294.
28. Laursen B, Sorensen H, Mortensen K, Sperling-Petersen H. 2005. Initiation of protein synthesis in bacteria. Microbiol Mol Biol Rev 69: 101-123.
29. Lorsch J, Dever T. 2010. Molecular view of 43S complex formation and start site selection in eukaryotic translation initiation. J Biol Chem 285: 21203-21207.
30. Malina A, Mills JR, Pelletier J. 2012. Emerging therapeutics targeting mRNA translation. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a012377.
31. Martin F, Barends S, Jaeger S, Schaeffer L, Prongidi-Fix L, Eriani G. 2011. Cap-assisted internal initiation of translation of histone H4. Mol Cell 41: 197-209.
32. Merrick W, Hensold J. 2000. The use of sucrose gradients in studies on eukaryotic translation. In Current protocols in cell biology, pp. 11.19.11-11.19.26. John Wiley & Sons, New York.
33. Nelson E, Winkler M. 1987. Regulation of mRNA entry into polysomes. Parameters affecting polysome size and the fraction of mRNA in polysomes. J Biol Chem 262: 11501-11506.
34. Noller H. 2007. Structure of the Bacterial Ribosome and Some Implications for Translational Regulation. In Translational control in biology and medicine (ed. Mathews MB, Sonenberg N, Hershey JWB), pp. 41-58. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
35. Palmiter R. 1972. Regulation of protein synthesis in chick oviduct. II. Modulation of polypeptide elongation and initiation rates by estrogen and progesterone. J Biol Chem 247: 6770-6780.
36. Park E, Walker S, Lee J, Rothenburg S, Lorsch J, Hinnebusch A. 2011. Multiple elements in the eIF4G1 N-terminus promote assembly of eIF4G1-PABP mRNPs in vivo. EMBO J 30: 302-316.
37. Parsyan A, Shahbazian D, Martineau Y, Petroulakis E, Alain T, Larsson O, Mathonnet G, Tettweiler G, Hellen C, Pestova T, et al. 2009. The helicase protein DHX29 promotes translation initiation, cell proliferation, and tumorigenesis. Proc Natl Acad Sci 106: 22217-22222.
38. Pavitt GD, Ron D. 2012. New insights into translational regulation in the endoplasmic reticulum unfolded protein response. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a012278.
39. Petrov A, Chen J, O'Leary S, Tsai A, Puglisi JD. 2012. Singlemolecule analysis of translational dynamics. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a011551.
40. Pooggin M, Ryabova L, He X, Futterer J, Hohn T. 2006. Mechanism of ribosome shunting in rice tungro bacilliform pararetrovirus. RNA 12: 841-850.
41. Rabl J, Leibundgut M, Ataide SF, Haag A, Ban N. 2011. Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1. Science 331: 730-736.
42. Raghavan A, Orgilvie R, Reilly C, Abelson M, Raghavan S, Vasdewani J, Krathwohl M, Bohjanen P. 2002. Genomewide analysis of mRNA decay in resting and activated primary human T lymphocytes. Nucleic Acids Res 30: 5529-5538.
43. Roux PP, Topisirovic I. 2012. Regulation of mRNA translation by signaling pathways. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a012252.
44. Ruggero D. 2012. Translational control in cancer etiology. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a012336.
45. Saini P, Eyler D, Green R, Dever T. 2009. Hypusine-containing protein eIF5A promotes translation elongation. Nature 459: 118-121.
46. Shirokikh N, Spirin A. 2008. Poly(A) leader of eukaryotic mRNA bypasses the dependence of translation on initiation factors. Proc Natl Acad Sci 105: 10738-10743.
47. Si K, Maitra U. 1999. The Saccharomyces cerevisiae homologue of mammalian translation initiation factor 6 does not function as a translation initiation factor. Mol Cell Biol 19: 1416-1426.
48. Siller E, DeZwaan D, Anderson J, Freeman B, Barral J. 2010. Slowing bacterial translation speed enhances eukaryotic protein folding efficiency. J Mol Biol 396: 1310-1318.
49. Steen K, Siegfried N, Weeks K. 2011. Selective 20-hydroxyl acylation analyzed by protection from exoribonuclease (RNase-detected SHAPE) for direct analysis of covalent adducts and of nucleotide flexibility in RNA. Nat Protoc 6: 1683-1694.
50. Ventoso I, Sanz M, Molina S, Berlanga J, Carrasco L, Esteban M. 2006. Translational resistance of late alphavirus mRNAto eIF2a phosphorylation: A strategy to overcome the antiviral effect of protein kinase PKR. Genes Dev 20: 87-100.
51. Vivinus S, Baulande S, van Zanten M, Campbell F, Topley P, Ellis J, Dessen P, Coste H. 2001. An element within the 50 untranslated region of human Hsp70 mRNA, which acts as a general enhancer ofmRNAtranslation. Eur J Biochem 268: 1908-1917.
52. Walsh D, Mathews MB, Mohr I. 2012. Tinkering with translation: Protein synthesisinvirus-infectedcells.Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a012351.
53. Wells S, Hillner P, Vale R, Sachs A. 1998. Circularization of mRNA by eukaryotic translation initiation factors. Mol Cell 2: 135-140.
54. Wilson DN, Cate JHD. 2012. The structure and function of the eukaryotic ribosome. Cold Spring Harb Perspect Biol doi: 10.1101/cshperspect.a011536.
55. Yueh A, Schneider R. 2000. Translation by ribosome shunting on adenovirus and hsp70 mRNAs facilitated by complementarity to 18S rRNA. Genes Dev 14: 414-421.
56. Zhang G, Hubalewska M, Ignatova Z. 2009. Transient ribosomal attenuation coordinates protein synthesis and co-translational folding. Nat Struct Mol Biol 16: 274-280.