메뉴 건너뛰기




Volumn 35, Issue 4, 2007, Pages 1322-1332

The gateway pDEST17 expression vector encodes a - 1 ribosomal frameshifting sequence

Author keywords

[No Author keywords available]

Indexed keywords

ALLENE OXIDE SYNTHASE; COMPLEMENTARY DNA; HYDROPEROXIDE LYASE; LIPOXYGENASE; LYASE; PLANT DNA; SYNTHETASE; UNCLASSIFIED DRUG;

EID: 34047121587     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm003     Document Type: Article
Times cited : (6)

References (44)
  • 1
    • 0030457112 scopus 로고    scopus 로고
    • Programmed translational frameshifting
    • Farabaugh,P.J. (1996) Programmed translational frameshifting. Annu. Rev. Genet., 30, 1322-528.
    • (1996) Annu. Rev. Genet. , vol.30 , pp. 1322-1528
    • Farabaugh, P.J.1
  • 2
    • 0037139583 scopus 로고    scopus 로고
    • Recoding: Translational bifurcations in gene expression
    • Baranov,P.V., Gesteland,R.F. and Atkins,J.F. (2002) Recoding: translational bifurcations in gene expression. Gene, 286, 187-201.
    • (2002) Gene , vol.286 , pp. 187-201
    • Baranov, P.V.1    Gesteland, R.F.2    Atkins, J.F.3
  • 3
    • 0842267214 scopus 로고    scopus 로고
    • Reprogrammed genetic decoding in cellular gene expression
    • Namy,O., Rousset,J.P., Napthine,S. and Brierley,I. (2004) Reprogrammed genetic decoding in cellular gene expression. Mol. Cell, 13, 157-168.
    • (2004) Mol. Cell , vol.13 , pp. 157-168
    • Namy, O.1    Rousset, J.P.2    Napthine, S.3    Brierley, I.4
  • 4
    • 0141625262 scopus 로고    scopus 로고
    • Programmed translational a1 frameshifting on hexanucleotide motifs and the wobble properties of tRNAs
    • Licznar,P., Mejlhede,N., Prere,M.F., Wills,N., Gesteland,R.F., Atkins,J.F. and Fayet,O. (2003) Programmed translational a1 frameshifting on hexanucleotide motifs and the wobble properties of tRNAs. EMBO J., 22, 4770-4778.
    • (2003) EMBO J. , vol.22 , pp. 4770-4778
    • Licznar, P.1    Mejlhede, N.2    Prere, M.F.3    Wills, N.4    Gesteland, R.F.5    Atkins, J.F.6    Fayet, O.7
  • 5
    • 0026733573 scopus 로고
    • Ribosomal movement impeded at a pseudoknot required for frameshifting
    • Tu,C., Tzeng,T.H. and Bruenn,J.A. (1992) Ribosomal movement impeded at a pseudoknot required for frameshifting. Proc. Natl. Acad. Sci. U.S.A., 89, 8636-8640.
    • (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 8636-8640
    • Tu, C.1    Tzeng, T.H.2    Bruenn, J.A.3
  • 6
    • 0027494569 scopus 로고
    • Ribosomal pausing during translation of an RNA pseudoknot
    • Somogyi,P., Jenner,A.J., Brierley,I. and Inglis,S.C. (1993) Ribosomal pausing during translation of an RNA pseudoknot. Mol. Cell. Biol., 13, 6931-6940.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 6931-6940
    • Somogyi, P.1    Jenner, A.J.2    Brierley, I.3    Inglis, S.C.4
  • 7
    • 0033984933 scopus 로고    scopus 로고
    • Kinetics of ribosomal pausing during programmed a1 translational frameshifting
    • Lopinski,J.D., Dinman,J.D. and Bruenn,J.A. (2000) Kinetics of ribosomal pausing during programmed a1 translational frameshifting. Mol. Cell. Biol., 20, 1095-1103.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 1095-1103
    • Lopinski, J.D.1    Dinman, J.D.2    Bruenn, J.A.3
  • 8
    • 0035200990 scopus 로고    scopus 로고
    • Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency
    • Kontos,H., Napthine,S. and Brierley,I. (2001) Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency. Mol. Cell. Biol., 21, 8657-8670.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 8657-8670
    • Kontos, H.1    Napthine, S.2    Brierley, I.3
  • 9
    • 0029091681 scopus 로고
    • Ribosomal frameshifting viral RNAs
    • Brierley,I. (1995) Ribosomal frameshifting viral RNAs. J. Gen. Virol., 76, (Pt 8), 1885-1892.
    • (1995) J. Gen. Virol. , vol.76 , Issue.PART 8 , pp. 1885-1892
    • Brierley, I.1
  • 10
    • 0035787892 scopus 로고    scopus 로고
    • Structure and function of the stimulatory RNAs involved in programmed eukaryotic-1 ribosomal frameshifting
    • Brierley,I. and Pennell,S. (2001) Structure and function of the stimulatory RNAs involved in programmed eukaryotic-1 ribosomal frameshifting. Cold Spring Harb. Symp. Quant. Biol., 66, 233-248.
    • (2001) Cold Spring Harb. Symp. Quant. Biol. , vol.66 , pp. 233-248
    • Brierley, I.1    Pennell, S.2
  • 12
    • 0024766985 scopus 로고
    • E. coli ribosomes re-phase on retroviral frameshift signals at rates ranging from 2 to 50 percent
    • Weiss,R.B., Dunn,D.M., Shuh,M., Atkins,J.F. and Gesteland,R.F. (1989) E. coli ribosomes re-phase on retroviral frameshift signals at rates ranging from 2 to 50 percent. New Biol., 1, 159-169.
    • (1989) New Biol. , vol.1 , pp. 159-169
    • Weiss, R.B.1    Dunn, D.M.2    Shuh, M.3    Atkins, J.F.4    Gesteland, R.F.5
  • 13
    • 0025354943 scopus 로고
    • Programmed ribosomal frameshifting generates the Escherichia coli DNA polymerase III γ from within the τ subunit reading frame
    • Blinkowa,A.L. and Walker,J.R. (1990) Programmed ribosomal frameshifting generates the Escherichia coli DNA polymerase III γ from within the τ subunit reading frame. Nucleic Acids Res., 18, 1725-1729.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 1725-1729
    • Blinkowa, A.L.1    Walker, J.R.2
  • 14
    • 0025303309 scopus 로고
    • The g subunit of DNA polymerase III holoenzyme of Escherichia coli is produced by ribosomal frameshifting
    • Flower,A.M. and McHenry,C.S. (1990) The g subunit of DNA polymerase III holoenzyme of Escherichia coli is produced by ribosomal frameshifting. Proc. Natl. Acad. Sci. U.S.A., 87, 3713-3717.
    • (1990) Proc. Natl. Acad. Sci. U.S.A. , vol.87 , pp. 3713-3717
    • Flower, A.M.1    McHenry, C.S.2
  • 15
    • 0025355475 scopus 로고
    • Translational frame-shifting generates the γ subunit of DNA polymerase III holoenzyme
    • Tsuchihashi,Z. and Kornberg,A. (1990) Translational frame-shifting generates the γ subunit of DNA polymerase III holoenzyme. Proc. Natl. Acad. Sci. U.S.A., 87, 2516-2520.
    • (1990) Proc. Natl. Acad. Sci. U.S.A. , vol.87 , pp. 2516-2520
    • Tsuchihashi, Z.1    Kornberg, A.2
  • 16
    • 0024277965 scopus 로고
    • Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region
    • Jacks,T., Madhani,H.D., Masiarz,F.R. and Varmus,H.E. (1988) Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region. Cell, 55, 447-458.
    • (1988) Cell , vol.55 , pp. 447-458
    • Jacks, T.1    Madhani, H.D.2    Masiarz, F.R.3    Varmus, H.E.4
  • 18
    • 0028007434 scopus 로고
    • rRNA-mRNA base pairing stimulates a programmed a1 ribosomal frameshift
    • Larsen,B., Wills,N.M., Gesteland,R.F. and Atkins,J.F. (1994) rRNA-mRNA base pairing stimulates a programmed a1 ribosomal frameshift. J. Bacteriol., 176, 6842-6851.
    • (1994) J. Bacteriol. , vol.176 , pp. 6842-6851
    • Larsen, B.1    Wills, N.M.2    Gesteland, R.F.3    Atkins, J.F.4
  • 20
    • 0024842181 scopus 로고
    • The cDNA cloning of a pea (Pisum sativum) seed lipoxygenase. Sequence comparisons of the two major pea seed lipoxygenase isoforms
    • Ealing,P.M. and Casey,R. (1989) The cDNA cloning of a pea (Pisum sativum) seed lipoxygenase. Sequence comparisons of the two major pea seed lipoxygenase isoforms. Biochem. J, 264, 929-932.
    • (1989) Biochem. J , vol.264 , pp. 929-932
    • Ealing, P.M.1    Casey, R.2
  • 21
    • 0032935861 scopus 로고    scopus 로고
    • ChloroP a neural network-based method for predicting chloroplast transit peptides and their cleavage sites
    • Emanuelsson,O., Nielsen,H. and von Heijne,G. (1999) ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites. Protein Sci., 8, 978-984.
    • (1999) Protein Sci. , vol.8 , pp. 978-984
    • Emanuelsson, O.1    Nielsen, H.2    von Heijne, G.3
  • 22
    • 33646253707 scopus 로고    scopus 로고
    • Characterization of Medicago truncatula (barrel medic) hydroperoxide lyase (CYP74C3), a watersoluble detergent-free cytochrome P450 monomer whose biological activity is defined by monomer-micelle association
    • Hughes,R.K., Belfield,E.J., Muthusamy,M., Khan,A., Rowe,A., Harding,S.E., Fairhurst,S.A., Bornemann,S., Ashton,R., Thorneley,R.N. and Casey,R. (2006) Characterization of Medicago truncatula (barrel medic) hydroperoxide lyase (CYP74C3), a watersoluble detergent-free cytochrome P450 monomer whose biological activity is defined by monomer-micelle association. Biochem. J., 395, 641-652.
    • (2006) Biochem. J. , vol.395 , pp. 641-652
    • Hughes, R.K.1    Belfield, E.J.2    Muthusamy, M.3    Khan, A.4    Rowe, A.5    Harding, S.E.6    Fairhurst, S.A.7    Bornemann, S.8    Ashton, R.9    Thorneley, R.N.10    Casey, R.11
  • 24
    • 0025734174 scopus 로고
    • A spectrophotometric assay for hydroperoxide lyase
    • Vick,B.A. (1991) A spectrophotometric assay for hydroperoxide lyase. Lipids, 26, 315-320.
    • (1991) Lipids , vol.26 , pp. 315-320
    • Vick, B.A.1
  • 25
    • 0032126176 scopus 로고    scopus 로고
    • Characterization of authentic recombinant pea-seed lipoxygenases with distinct properties and reaction mechanisms
    • Hughes,R.K., Wu,Z., Robinson,D.S., Hardy,D., West,S.I., Fairhurst,S.A. and Casey,R. (1998) Characterization of authentic recombinant pea-seed lipoxygenases with distinct properties and reaction mechanisms. Biochem. J., 333, 33-43.
    • (1998) Biochem. J. , vol.333 , pp. 33-43
    • Hughes, R.K.1    Wu, Z.2    Robinson, D.S.3    Hardy, D.4    West, S.I.5    Fairhurst, S.A.6    Casey, R.7
  • 26
    • 0034652208 scopus 로고    scopus 로고
    • Nonlinearity in genetic decoding: Homologous DNA replicase genes use alternatives of transcriptional slippage or translational frameshifting
    • Larsen,B., Wills,N.M., Nelson,C., Atkins,J.F. and Gesteland,R.F. (2000) Nonlinearity in genetic decoding: Homologous DNA replicase genes use alternatives of transcriptional slippage or translational frameshifting. Proc. Natl. Acad. Sci. U.S.A., 97, 1683-1688.
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 1683-1688
    • Larsen, B.1    Wills, N.M.2    Nelson, C.3    Atkins, J.F.4    Gesteland, R.F.5
  • 28
    • 0034646077 scopus 로고    scopus 로고
    • Transcriptional slippage of p53 gene enhanced by cellular damage in rat liver: Monitoring the slippage by a yeast functional assay
    • Ba,Y., Tonoki,H., Tada,M., Nakata,D., Hamada,J. and Moriuchi,T. (2000) Transcriptional slippage of p53 gene enhanced by cellular damage in rat liver: Monitoring the slippage by a yeast functional assay. Mutat. Res., 447, 209-220.
    • (2000) Mutat. Res. , vol.447 , pp. 209-220
    • Ba, Y.1    Tonoki, H.2    Tada, M.3    Nakata, D.4    Hamada, J.5    Moriuchi, T.6
  • 29
    • 0025109103 scopus 로고
    • Misalignment-mediated DNA synthesis errors
    • Kunkel,T.A. (1990) Misalignment-mediated DNA synthesis errors. Biochemistry, 29, 8003-8011.
    • (1990) Biochemistry , vol.29 , pp. 8003-8011
    • Kunkel, T.A.1
  • 30
    • 0036893213 scopus 로고    scopus 로고
    • Base composition of mononucleotide runs affects DNA polymerase slippage and removal of frameshift intermediates by mismatch repair in Saccharomyces cerevisiae
    • Gragg,H., Harfe,B.D. and Jinks-Robertson,S. (2002) Base composition of mononucleotide runs affects DNA polymerase slippage and removal of frameshift intermediates by mismatch repair in Saccharomyces cerevisiae. Mol. Cell. Biol., 22, 8756-8762.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 8756-8762
    • Gragg, H.1    Harfe, B.D.2    Jinks-Robertson, S.3
  • 31
    • 0028147897 scopus 로고
    • The nucleic acid-binding zinc finger protein of potato virus M is translated by internal initiation as well as by ribosomal frameshifting involving a shifty stop codon and a novel mechanism of P-site slippage
    • Gramstat,A., Prufer,D. and Rohde,W. (1994) The nucleic acid-binding zinc finger protein of potato virus M is translated by internal initiation as well as by ribosomal frameshifting involving a shifty stop codon and a novel mechanism of P-site slippage. Nucleic Acids Res., 22, 3911-3917.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 3911-3917
    • Gramstat, A.1    Prufer, D.2    Rohde, W.3
  • 32
    • 0026620391 scopus 로고
    • DNA sequences required for translational frameshifting in production of the transposase encoded by IS1
    • Sekine,Y. and Ohtsubo,E. (1992) DNA sequences required for translational frameshifting in production of the transposase encoded by IS1. Mol. Gen. Genet., 235, 325-332.
    • (1992) Mol. Gen. Genet. , vol.235 , pp. 325-332
    • Sekine, Y.1    Ohtsubo, E.2
  • 33
    • 0029870925 scopus 로고    scopus 로고
    • Programmed translational frameshifting
    • Farabaugh,P.J. (1996) Programmed translational frameshifting. Microbiol. Rev., 60, 103-134.
    • (1996) Microbiol. Rev. , vol.60 , pp. 103-134
    • Farabaugh, P.J.1
  • 34
    • 0022547355 scopus 로고
    • Expression of peptide chain release factor 2 requires high-efficiency frameshift
    • Craigen,W.J. and Caskey,C.T. (1986) Expression of peptide chain release factor 2 requires high-efficiency frameshift. Nature, 322, 273-275.
    • (1986) Nature , vol.322 , pp. 273-275
    • Craigen, W.J.1    Caskey, C.T.2
  • 35
    • 0027477087 scopus 로고
    • Increased ribosomal accuracy increases a programmed translational frameshift in Escherichia coli
    • Sipley,J. and Goldman,E. (1993) Increased ribosomal accuracy increases a programmed translational frameshift in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A., 90, 2315-2319.
    • (1993) Proc. Natl. Acad. Sci. U.S.A. , vol.90 , pp. 2315-2319
    • Sipley, J.1    Goldman, E.2
  • 36
    • 15044348272 scopus 로고    scopus 로고
    • Characterization of the frameshift signal of Edr, a mammalian example of programmed a1 ribosomal frameshifting
    • Manktelow,E., Shigemoto,K. and Brierley,I. (2005) Characterization of the frameshift signal of Edr, a mammalian example of programmed a1 ribosomal frameshifting. Nucleic Acids. Res., 33, 1553-1563.
    • (2005) Nucleic Acids. Res. , vol.33 , pp. 1553-1563
    • Manktelow, E.1    Shigemoto, K.2    Brierley, I.3
  • 37
    • 0042121256 scopus 로고    scopus 로고
    • mfold web server for nucleic acid folding and hybridization prediction
    • Zuker,M. (2003) mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids. Res., 31, 3406-3415.
    • (2003) Nucleic Acids. Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 38
    • 0026593806 scopus 로고
    • Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops
    • Antao,V.P. and Tinoco,I., Jr (1992) Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops. Nucleic Acids. Res., 20, 819-824.
    • (1992) Nucleic Acids. Res. , vol.20 , pp. 819-824
    • Antao, V.P.1    Tinoco Jr., I.2
  • 39
    • 33747874580 scopus 로고    scopus 로고
    • CONTRAfold: RNA secondary structure prediction without physics-based models
    • Do,C.B., Woods,D.A. and Batzoglou,S. (2006) CONTRAfold: RNA secondary structure prediction without physics-based models. Bioinformatics, 22, e90-e98.
    • (2006) Bioinformatics , vol.22
    • Do, C.B.1    Woods, D.A.2    Batzoglou, S.3
  • 40
    • 0024230701 scopus 로고
    • HIV expression strategies: Ribosomal frameshifting is directed by a short sequence in both mammalian and yeast systems
    • Wilson,W., Braddock,M., Adams,S.E., Rathjen,P.D., Kingsman,S.M. and Kingsman,A.J. (1988) HIV expression strategies: Ribosomal frameshifting is directed by a short sequence in both mammalian and yeast systems. Cell, 55, 1159-1169.
    • (1988) Cell , vol.55 , pp. 1159-1169
    • Wilson, W.1    Braddock, M.2    Adams, S.E.3    Rathjen, P.D.4    Kingsman, S.M.5    Kingsman, A.J.6
  • 41
    • 0026717107 scopus 로고
    • Human immunodeficiency virus type 1 gag-pol frameshifting is dependent on downstream mRNA secondary structure: Demonstration by expression in vivo
    • Parkin,N.T., Chamorro,M. and Varmus,H.E. (1992) Human immunodeficiency virus type 1 gag-pol frameshifting is dependent on downstream mRNA secondary structure: Demonstration by expression in vivo. J. Virol., 66, 5147-5151.
    • (1992) J. Virol. , vol.66 , pp. 5147-5151
    • Parkin, N.T.1    Chamorro, M.2    Varmus, H.E.3
  • 42
    • 0025303605 scopus 로고
    • Ribosomal frameshifting in the yeast retrotransposon Ty:tRNAs induce slippage on a 7 nucleotide minimal site
    • Belcourt,M.F. and Farabaugh,P.J. (1990) Ribosomal frameshifting in the yeast retrotransposon Ty:tRNAs induce slippage on a 7 nucleotide minimal site. Cell, 62, 339-352.
    • (1990) Cell , vol.62 , pp. 339-352
    • Belcourt, M.F.1    Farabaugh, P.J.2
  • 44
    • 0242473140 scopus 로고    scopus 로고
    • Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli
    • Gurvich,O.L., Baranov,P.V., Zhou,J., Hammer,A.W., Gesteland,R.F. and Atkins,J.F. (2003) Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli. EMBO J., 22, 5941-5950.
    • (2003) EMBO J. , vol.22 , pp. 5941-5950
    • Gurvich, O.L.1    Baranov, P.V.2    Zhou, J.3    Hammer, A.W.4    Gesteland, R.F.5    Atkins, J.F.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.