-
1
-
-
84901297159
-
Changes in RNA splicing in developing soybean (Glycine max) embryos
-
Aghamirzaie, D., Nabiyouni, M., Fang, Y., Klumas, C., Heath, L.S., Grene, R., and, Collakova, E., (2013) Changes in RNA splicing in developing soybean (Glycine max) embryos. Biology, 2, 1311-1337.
-
(2013)
Biology
, vol.2
, pp. 1311-1337
-
-
Aghamirzaie, D.1
Nabiyouni, M.2
Fang, Y.3
Klumas, C.4
Heath, L.S.5
Grene, R.6
Collakova, E.7
-
2
-
-
84946921596
-
Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos
-
Aghamirzaie, D., Batra, D., Heath, L.S., Schneider, A., Grene, R., and, Collakova, E., (2015) Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos. BMC Genom., 16, 928.
-
(2015)
BMC Genom.
, vol.16
, pp. 928
-
-
Aghamirzaie, D.1
Batra, D.2
Heath, L.S.3
Schneider, A.4
Grene, R.5
Collakova, E.6
-
3
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
Bailey, T.L., Boden, M., Buske, F.A., Frith, M., Grant, C.E., Clementi, L., Ren, J., Li, W.W., and, Nobel, W.S., (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res., 37, 202-208.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 202-208
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Nobel, W.S.9
-
4
-
-
84979860021
-
The MEME Suite
-
Bailey, T.L., Johnson, J., Grant, C.E., and, Noble, W.S., (2015) The MEME Suite. Nucleic Acids Res., 43, W39-W49.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. W39-W49
-
-
Bailey, T.L.1
Johnson, J.2
Grant, C.E.3
Noble, W.S.4
-
5
-
-
0036487177
-
An integrated overview of seed development in Arabidopsis thaliana ecotype WS
-
Baud, S., Boutin, J.P., Miquel, M., Lepiniec, L., and, Rochat, C., (2002) An integrated overview of seed development in Arabidopsis thaliana ecotype WS. Plant Physiol. Biochem., 40, 151-160.
-
(2002)
Plant Physiol. Biochem.
, vol.40
, pp. 151-160
-
-
Baud, S.1
Boutin, J.P.2
Miquel, M.3
Lepiniec, L.4
Rochat, C.5
-
6
-
-
70450285907
-
Storage reserve accumulation in Arabidopsis: Metabolic and developmental control of seed filling
-
Baud, S., Dubreucq, B., Miquel, M., Rochat, C., and, Lepiniec, L., (2008) Storage reserve accumulation in Arabidopsis: metabolic and developmental control of seed filling. Arabidopsis Book, 6, e0113.
-
(2008)
Arabidopsis Book
, vol.6
, pp. e0113
-
-
Baud, S.1
Dubreucq, B.2
Miquel, M.3
Rochat, C.4
Lepiniec, L.5
-
7
-
-
84873135198
-
Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed
-
Belmonte, M.F., Kirkbride, R.C., Stone, S.L., et al. (2013) Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed. Proc. Natl Acad. Sci. USA, 110, E435-E444.
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. E435-E444
-
-
Belmonte, M.F.1
Kirkbride, R.C.2
Stone, S.L.3
-
8
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y., and, Hochberg, Y., (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Royal Stat. Soc. B, 57, 289-300.
-
(1995)
J. Royal Stat. Soc. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
9
-
-
33644785858
-
Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis
-
Braybrook, S.A., Stone, S.L., Park, S., Bui, A.Q., Le, B.H., Fischer, R.L., Goldberg, R.B., and, Harada, J.J., (2006) Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis. Proc. Natl Acad. Sci. USA, 103, 3468-3473.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 3468-3473
-
-
Braybrook, S.A.1
Stone, S.L.2
Park, S.3
Bui, A.Q.4
Le, B.H.5
Fischer, R.L.6
Goldberg, R.B.7
Harada, J.J.8
-
10
-
-
44449154262
-
Differential expression of WOX genes mediates apical-basal axis formation in the Arabidopsis embryo
-
Breuninger, H., Rikirsch, E., Hermann, M., Ueda, M., and, Laux, T., (2008) Differential expression of WOX genes mediates apical-basal axis formation in the Arabidopsis embryo. Dev. Cell, 14, 867-876.
-
(2008)
Dev. Cell
, vol.14
, pp. 867-876
-
-
Breuninger, H.1
Rikirsch, E.2
Hermann, M.3
Ueda, M.4
Laux, T.5
-
11
-
-
9144230748
-
Interaction of Polycomb-group proteins controlling flowering in Arabidopsis
-
Chanvivattana, Y., Bishopp, A., Schubert, D., Stock, C., Moon, Y.H., Sung, Z.R., and, Goodrich, J., (2004) Interaction of Polycomb-group proteins controlling flowering in Arabidopsis. Development, 131, 5263-5276.
-
(2004)
Development
, vol.131
, pp. 5263-5276
-
-
Chanvivattana, Y.1
Bishopp, A.2
Schubert, D.3
Stock, C.4
Moon, Y.H.5
Sung, Z.R.6
Goodrich, J.7
-
12
-
-
84940944686
-
TRANSPARENT TESTA GLABRA 1 regulates the accumulation of seed storage reserves in Arabidopsis
-
Chen, M., Zhang, B., Li, C., Kulaveerasingam, H., Chew, F.T., and, Yu, H., (2015) TRANSPARENT TESTA GLABRA 1 regulates the accumulation of seed storage reserves in Arabidopsis. Plant Physiol., 169, 391-402.
-
(2015)
Plant Physiol.
, vol.169
, pp. 391-402
-
-
Chen, M.1
Zhang, B.2
Li, C.3
Kulaveerasingam, H.4
Chew, F.T.5
Yu, H.6
-
13
-
-
57749121499
-
Arabidopsis 10-formyl tetrahydrofolate deformylases are essential for photorespiration
-
Collakova, E., Goyer, A., Naponelli, V., Krassovskaya, I., Gregory, J.F. 3rd, Hanson, A.D., and, Shachar-Hill, Y., (2008) Arabidopsis 10-formyl tetrahydrofolate deformylases are essential for photorespiration. Plant Cell, 20, 1818-1832.
-
(2008)
Plant Cell
, vol.20
, pp. 1818-1832
-
-
Collakova, E.1
Goyer, A.2
Naponelli, V.3
Krassovskaya, I.4
Gregory, J.F.5
Hanson, A.D.6
Shachar Hill, Y.7
-
14
-
-
85016506648
-
Metabolic and transcriptional reprogramming in developing soybean (Glycine max) embryos
-
Collakova, E., Aghamirzaie, D., Fang, Y., Klumas, C., Tabataba, F., Kakumanu, A., Myers, E., Heath, L.S., and, Grene, R., (2013) Metabolic and transcriptional reprogramming in developing soybean (Glycine max) embryos. Metabolites, 3, 347-372.
-
(2013)
Metabolites
, vol.3
, pp. 347-372
-
-
Collakova, E.1
Aghamirzaie, D.2
Fang, Y.3
Klumas, C.4
Tabataba, F.5
Kakumanu, A.6
Myers, E.7
Heath, L.S.8
Grene, R.9
-
15
-
-
84855902041
-
Identification of reference genes for RT-qPCR expression analysis in Arabidopsis and tomato seeds
-
Dekkers, B.J., Willems, L., Bassel, G.W., van Bolderen-Veldkamp, R.P., Ligterink, W., Hilhorst, H.W., and, Bentsink, L., (2012) Identification of reference genes for RT-qPCR expression analysis in Arabidopsis and tomato seeds. Plant Cell Physiol., 53, 28-37.
-
(2012)
Plant Cell Physiol.
, vol.53
, pp. 28-37
-
-
Dekkers, B.J.1
Willems, L.2
Bassel, G.W.3
Van Bolderen-Veldkamp, R.P.4
Ligterink, W.5
Hilhorst, H.W.6
Bentsink, L.7
-
16
-
-
0036007687
-
Metabolomics - The link between genotypes and phenotypes
-
Fiehn, O., (2002) Metabolomics-the link between genotypes and phenotypes. Plant Mol. Biol., 48, 155-171.
-
(2002)
Plant Mol. Biol.
, vol.48
, pp. 155-171
-
-
Fiehn, O.1
-
17
-
-
84899157501
-
Abscisic acid synthesis and response
-
Finkelstein, R., (2013) Abscisic acid synthesis and response. Arabidopsis Book, 11, e0166.
-
(2013)
Arabidopsis Book
, vol.11
, pp. e0166
-
-
Finkelstein, R.1
-
18
-
-
0036270393
-
Abscisic acid signaling in seeds and seedlings
-
Finkelstein, R.R., Gampala, S.S., and, Rock, C.D., (2002) Abscisic acid signaling in seeds and seedlings. Plant Cell, 14 (Suppl), S15-S45.
-
(2002)
Plant Cell
, vol.14
, pp. S15-S45
-
-
Finkelstein, R.R.1
Gampala, S.S.2
Rock, C.D.3
-
19
-
-
79953300078
-
FIMO: Scanning for occurrences of a given motif
-
Grant, C.E., Bailey, T.L., and, Noble, W.S., (2011) FIMO: scanning for occurrences of a given motif. Bioinformatics, 27, 1017-1018.
-
(2011)
Bioinformatics
, vol.27
, pp. 1017-1018
-
-
Grant, C.E.1
Bailey, T.L.2
Noble, W.S.3
-
20
-
-
70350132711
-
The RY/Sph element mediates transcriptional repression of maturation genes from late maturation to early seedling growth
-
Guerriero, G., Martin, N., Golovko, A., Sundstrom, J.F., Rask, L., and, Ezcurra, I., (2009) The RY/Sph element mediates transcriptional repression of maturation genes from late maturation to early seedling growth. New Phytol., 184, 552-565.
-
(2009)
New Phytol.
, vol.184
, pp. 552-565
-
-
Guerriero, G.1
Martin, N.2
Golovko, A.3
Sundstrom, J.F.4
Rask, L.5
Ezcurra, I.6
-
21
-
-
84880770032
-
The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism
-
Guo, X., Hou, X., Fang, J., Wei, P., Xu, B., Chen, M., Feng, Y., and, Chu, C., (2013) The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism. Plant J., 75, 403-416.
-
(2013)
Plant J.
, vol.75
, pp. 403-416
-
-
Guo, X.1
Hou, X.2
Fang, J.3
Wei, P.4
Xu, B.5
Chen, M.6
Feng, Y.7
Chu, C.8
-
22
-
-
0142214657
-
Expression and maintenance of embryogenic potential is enhanced through constitutive expression of AGAMOUS-Like 15
-
Harding, E.W., Tang, W., Nichols, K.W., Fernandez, D.E., and, Perry, S.E., (2003) Expression and maintenance of embryogenic potential is enhanced through constitutive expression of AGAMOUS-Like 15. Plant Physiol., 133, 653-663.
-
(2003)
Plant Physiol.
, vol.133
, pp. 653-663
-
-
Harding, E.W.1
Tang, W.2
Nichols, K.W.3
Fernandez, D.E.4
Perry, S.E.5
-
23
-
-
33750542134
-
Proteomic and transcriptomic analysis of Arabidopsis seeds: Molecular evidence for successive processing of seed proteins and its implication in the stress response to sulfur nutrition
-
Higashi, Y., Hirai, M.Y., Fujiwara, T., Naito, S., Noji, M., and, Saito, K., (2006) Proteomic and transcriptomic analysis of Arabidopsis seeds: molecular evidence for successive processing of seed proteins and its implication in the stress response to sulfur nutrition. Plant J., 48, 557-571.
-
(2006)
Plant J.
, vol.48
, pp. 557-571
-
-
Higashi, Y.1
Hirai, M.Y.2
Fujiwara, T.3
Naito, S.4
Noji, M.5
Saito, K.6
-
24
-
-
79956121935
-
The CW domain, a new histone recognition module in chromatin proteins
-
Hoppmann, V., Thorstensen, T., Kristiansen, P.E., Veiseth, S.V., Rahman, M.A., Finne, K., Aalen, R.B., and, Aasland, R., (2011) The CW domain, a new histone recognition module in chromatin proteins. EMBO J., 30, 1939-1952.
-
(2011)
EMBO J.
, vol.30
, pp. 1939-1952
-
-
Hoppmann, V.1
Thorstensen, T.2
Kristiansen, P.E.3
Veiseth, S.V.4
Rahman, M.A.5
Finne, K.6
Aalen, R.B.7
Aasland, R.8
-
25
-
-
26644432046
-
Two naturally occurring deletion mutants of 12S seed storage proteins in Arabidopsis thaliana
-
Hou, A., Liu, K., Catawatcharakul, N., Tang, X., Nguyen, V., Keller, W.A., Tsang, E.W., and, Cui, Y., (2005) Two naturally occurring deletion mutants of 12S seed storage proteins in Arabidopsis thaliana. Planta, 222, 512-520.
-
(2005)
Planta
, vol.222
, pp. 512-520
-
-
Hou, A.1
Liu, K.2
Catawatcharakul, N.3
Tang, X.4
Nguyen, V.5
Keller, W.A.6
Tsang, E.W.7
Cui, Y.8
-
26
-
-
33845257333
-
The ENHANCER of SHOOT REGENERATION 2 gene in Arabidopsis regulates CUP-SHAPED COTYLEDON 1 at the transcriptional level and controls cotyledon development
-
Ikeda, Y., Banno, H., Niu, Q.W., Howell, S.H., and, Chua, N.H., (2006) The ENHANCER OF SHOOT REGENERATION 2 gene in Arabidopsis regulates CUP-SHAPED COTYLEDON 1 at the transcriptional level and controls cotyledon development. Plant Cell Physiol., 47, 1443-1456.
-
(2006)
Plant Cell Physiol.
, vol.47
, pp. 1443-1456
-
-
Ikeda, Y.1
Banno, H.2
Niu, Q.W.3
Howell, S.H.4
Chua, N.H.5
-
27
-
-
84886798837
-
Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression
-
Jia, H., McCarty, D.R., and, Suzuki, M., (2013) Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression. Plant Physiol., 163, 1293-1305.
-
(2013)
Plant Physiol.
, vol.163
, pp. 1293-1305
-
-
Jia, H.1
McCarty, D.R.2
Suzuki, M.3
-
28
-
-
84886799117
-
Regulation of the seed to seedling developmental phase transition by the LAFL and VAL transcription factor networks
-
Jia, H., Suzuki, M., and, McCarty, D.R., (2014) Regulation of the seed to seedling developmental phase transition by the LAFL and VAL transcription factor networks. WIREs Dev. Biol., 3, 135-145.
-
(2014)
WIREs Dev. Biol.
, vol.3
, pp. 135-145
-
-
Jia, H.1
Suzuki, M.2
McCarty, D.R.3
-
29
-
-
84864423903
-
Elongation-related functions of LEAFY COTYLEDON1 during the development of Arabidopsis thaliana
-
Junker, A., Monke, G., Rutten, T., et al. (2012) Elongation-related functions of LEAFY COTYLEDON1 during the development of Arabidopsis thaliana. Plant J., 71, 427-442.
-
(2012)
Plant J.
, vol.71
, pp. 427-442
-
-
Junker, A.1
Monke, G.2
Rutten, T.3
-
30
-
-
79951506522
-
EAR motif-mediated transcriptional repression in plants: An underlying mechanism for epigenetic regulation of gene expression
-
Kagale, S., and, Rozwadowski, K., (2011) EAR motif-mediated transcriptional repression in plants: an underlying mechanism for epigenetic regulation of gene expression. Epigenetics, 6, 141-146.
-
(2011)
Epigenetics
, vol.6
, pp. 141-146
-
-
Kagale, S.1
Rozwadowski, K.2
-
31
-
-
78651310442
-
Comprehensive hormone profiling in developing Arabidopsis seeds: Examination of the site of ABA biosynthesis, ABA transport and hormone interactions
-
Kanno, Y., Jikumaru, Y., Hanada, A., Nambara, E., Abrams, S.R., Kamiya, Y., and, Seo, M., (2010) Comprehensive hormone profiling in developing Arabidopsis seeds: examination of the site of ABA biosynthesis, ABA transport and hormone interactions. Plant Cell Physiol., 51, 1988-2001.
-
(2010)
Plant Cell Physiol.
, vol.51
, pp. 1988-2001
-
-
Kanno, Y.1
Jikumaru, Y.2
Hanada, A.3
Nambara, E.4
Abrams, S.R.5
Kamiya, Y.6
Seo, M.7
-
32
-
-
84908158261
-
Endoplasmic reticulum-associated inactivation of the hormone jasmonoyl-L-isoleucine by multiple members of the cytochrome P450 94 family in Arabidopsis
-
Koo, A.J., Thireault, C., Zemelis, S., Poudel, A.N., Zhang, T., Kitaoka, N., Brandizzi, F., Matsuura, H., and, Howe, G.A., (2014) Endoplasmic reticulum-associated inactivation of the hormone jasmonoyl-L-isoleucine by multiple members of the cytochrome P450 94 family in Arabidopsis. J. Biol. Chem., 289, 29728-29738.
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 29728-29738
-
-
Koo, A.J.1
Thireault, C.2
Zemelis, S.3
Poudel, A.N.4
Zhang, T.5
Kitaoka, N.6
Brandizzi, F.7
Matsuura, H.8
Howe, G.A.9
-
33
-
-
33748762745
-
A role for chromatin remodeling in regulation of CUC gene expression in the Arabidopsis cotyledon boundary
-
Kwon, C.S., Hibara, K., Pfluger, J., Bezhani, S., Metha, H., Aida, M., Tasaka, M., and, Wagner, D., (2006) A role for chromatin remodeling in regulation of CUC gene expression in the Arabidopsis cotyledon boundary. Development, 133, 3223-3230.
-
(2006)
Development
, vol.133
, pp. 3223-3230
-
-
Kwon, C.S.1
Hibara, K.2
Pfluger, J.3
Bezhani, S.4
Metha, H.5
Aida, M.6
Tasaka, M.7
Wagner, D.8
-
34
-
-
84896735766
-
Voom: Precision weights unlock linear model analysis tools for RNA-seq read counts
-
Law, C.W., Chen, Y., Shi, W., and, Smyth, G.K., (2014) Voom: Precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol., 15, R29.
-
(2014)
Genome Biol.
, vol.15
, pp. R29
-
-
Law, C.W.1
Chen, Y.2
Shi, W.3
Smyth, G.K.4
-
35
-
-
77952382638
-
Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors
-
Le, B.H., Cheng, C., Bui, A.Q., et al. (2010) Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors. Proc. Natl. Acad. Sci. U. S. A., 107, 8063-8070.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A
, vol.107
, pp. 8063-8070
-
-
Le, B.H.1
Cheng, C.2
Bui, A.Q.3
-
36
-
-
33646069325
-
Oil content of Arabidopsis seeds: The influence of seed anatomy, light and plant-to-plant variation
-
Li, Y., Beisson, F., Pollard, M., and, Ohlrogge, J., (2006) Oil content of Arabidopsis seeds: the influence of seed anatomy, light and plant-to-plant variation. Phytochemistry, 67, 904-915.
-
(2006)
Phytochemistry
, vol.67
, pp. 904-915
-
-
Li, Y.1
Beisson, F.2
Pollard, M.3
Ohlrogge, J.4
-
37
-
-
84868480786
-
WOX2 and STIMPY-LIKE/WOX8 promote cotyledon boundary formation in Arabidopsis
-
Lie, C., Kelsom, C., and, Wu, X., (2012) WOX2 and STIMPY-LIKE/WOX8 promote cotyledon boundary formation in Arabidopsis. Plant J., 72, 674-682.
-
(2012)
Plant J.
, vol.72
, pp. 674-682
-
-
Lie, C.1
Kelsom, C.2
Wu, X.3
-
38
-
-
84912569727
-
Isotopically nonstationary 13C flux analysis of changes in Arabidopsis thaliana leaf metabolism due to high light acclimation
-
Ma, F., Jazmin, L.J., Young, J.D., and, Allen, D.K., (2014) Isotopically nonstationary 13C flux analysis of changes in Arabidopsis thaliana leaf metabolism due to high light acclimation. Proc. Natl. Acad. Sci. U. S. A., 111, 16967-16972.
-
(2014)
Proc. Natl. Acad. Sci. U. S. A
, vol.111
, pp. 16967-16972
-
-
Ma, F.1
Jazmin, L.J.2
Young, J.D.3
Allen, D.K.4
-
39
-
-
77950529946
-
Motif Enrichment Analysis: A unified framework and an evaluation on ChIP data
-
McLeay, R.C., and, Bailey, T.L., (2010) Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data. BMC Bioinformatics, 11, 165.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 165
-
-
McLeay, R.C.1
Bailey, T.L.2
-
41
-
-
84884686966
-
BZIP67 regulates the omega-3 fatty acid content of Arabidopsis seed oil by activating fatty acid desaturase 3
-
Mendes, A., Kelly, A.A., van Erp, H., Shaw, E., Powers, S.J., Kurup, S., and, Eastmond, P.J., (2013) bZIP67 regulates the omega-3 fatty acid content of Arabidopsis seed oil by activating fatty acid desaturase 3. Plant Cell, 25, 3104-3116.
-
(2013)
Plant Cell
, vol.25
, pp. 3104-3116
-
-
Mendes, A.1
Kelly, A.A.2
Van Erp, H.3
Shaw, E.4
Powers, S.J.5
Kurup, S.6
Eastmond, P.J.7
-
42
-
-
2442572055
-
Seed-specific transcription factors ABI3 and FUS3: Molecular interaction with DNA
-
Monke, G., Altschmied, L., Tewes, A., Reidt, W., Mock, H.P., Baumlein, H., and, Conrad, U., (2004) Seed-specific transcription factors ABI3 and FUS3: molecular interaction with DNA. Planta, 219, 158-166.
-
(2004)
Planta
, vol.219
, pp. 158-166
-
-
Monke, G.1
Altschmied, L.2
Tewes, A.3
Reidt, W.4
Mock, H.P.5
Baumlein, H.6
Conrad, U.7
-
43
-
-
84866902488
-
Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon
-
Monke, G., Seifert, M., Keilwagen, J., et al. (2012) Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon. Nucleic Acids Res., 40, 8240-8254.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 8240-8254
-
-
Monke, G.1
Seifert, M.2
Keilwagen, J.3
-
44
-
-
84955575740
-
PHDs govern plant development
-
Mouriz, A., Lopez-Gonzalez, L., Jarillo, J.A., and, Pineiro, M., (2015) PHDs govern plant development. Plant Signal Behav., 10, e993253.
-
(2015)
Plant Signal Behav.
, vol.10
, pp. e993253
-
-
Mouriz, A.1
Lopez-Gonzalez, L.2
Jarillo, J.A.3
Pineiro, M.4
-
45
-
-
84855480596
-
Rapid and sensitive hormonal profiling of complex plant samples by liquid chromatography coupled to electrospray ionization tandem mass spectrometry
-
Muller, M., and, Munne-Bosch, S., (2011) Rapid and sensitive hormonal profiling of complex plant samples by liquid chromatography coupled to electrospray ionization tandem mass spectrometry. Plant Methods, 7, 37.
-
(2011)
Plant Methods
, vol.7
, pp. 37
-
-
Muller, M.1
Munne-Bosch, S.2
-
46
-
-
20444402692
-
Abscisic acid biosynthesis and catabolism
-
Nambara, E., and, Marion-Poll, A., (2005) Abscisic acid biosynthesis and catabolism. Annu. Rev. Plant Biol., 56, 165-185.
-
(2005)
Annu. Rev. Plant Biol.
, vol.56
, pp. 165-185
-
-
Nambara, E.1
Marion-Poll, A.2
-
47
-
-
70349247546
-
DNA-free RNA isolation protocols for Arabidopsis thaliana, including seeds and siliques
-
Onate-Sanchez, L., and, Vicente-Carbajosa, J., (2008) DNA-free RNA isolation protocols for Arabidopsis thaliana, including seeds and siliques. BMC Res. Notes, 1, 93.
-
(2008)
BMC Res. Notes
, vol.1
, pp. 93
-
-
Onate-Sanchez, L.1
Vicente-Carbajosa, J.2
-
48
-
-
34248197316
-
Storage reserve mobilisation and seedling establishment in Arabidopsis
-
Penfield, S., Pinfield-Wells, H.M., and, Graham, I.A., (2006) Storage reserve mobilisation and seedling establishment in Arabidopsis. Arabidopsis Book, 4, e0100.
-
(2006)
Arabidopsis Book
, vol.4
, pp. e0100
-
-
Penfield, S.1
Pinfield-Wells, H.M.2
Graham, I.A.3
-
49
-
-
84924377038
-
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
-
Pertea, M., Pertea, G.M., Antonescu, C.M., Chang, T.C., Mendell, J.T., and, Salzberg, S.L., (2015) StringTie enables improved reconstruction of a transcriptome from RNA-seq reads. Nat. Biotechnol., 33, 290-295.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 290-295
-
-
Pertea, M.1
Pertea, G.M.2
Antonescu, C.M.3
Chang, T.C.4
Mendell, J.T.5
Salzberg, S.L.6
-
50
-
-
84926507971
-
Limma powers differential expression analyses for RNA-sequencing and microarray studies
-
Ritchie, M.E., Phipson, B., Wu, D., Hu, Y., Law, C.W., Shi, W., and, Smyth, G.K., (2015) limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res., 43, e47.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. e47
-
-
Ritchie, M.E.1
Phipson, B.2
Wu, D.3
Hu, Y.4
Law, C.W.5
Shi, W.6
Smyth, G.K.7
-
51
-
-
79959893275
-
The PHD finger: A versatile epigenome reader
-
Sanchez, R., and, Zhou, M.M., (2011) The PHD finger: a versatile epigenome reader. Trends Biochem. Sci., 36, 364-372.
-
(2011)
Trends Biochem. Sci.
, vol.36
, pp. 364-372
-
-
Sanchez, R.1
Zhou, M.M.2
-
52
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
Schmid, M., Davison, T.S., Henz, S.R., Pape, U.J., Demar, M., Vingron, M., Scholkopf, B., Weigel, D., and, Lohmann, J.U., (2005) A gene expression map of Arabidopsis thaliana development. Nat. Genet., 37, 501-506.
-
(2005)
Nat. Genet.
, vol.37
, pp. 501-506
-
-
Schmid, M.1
Davison, T.S.2
Henz, S.R.3
Pape, U.J.4
Demar, M.5
Vingron, M.6
Scholkopf, B.7
Weigel, D.8
Lohmann, J.U.9
-
53
-
-
44949231424
-
Analyzing real-time PCR data by the comparative CT method
-
Schmittgen, T.D., and, Livak, K.J., (2008) Analyzing real-time PCR data by the comparative CT method. Nat. Protoc., 3, 1101-1108.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1101-1108
-
-
Schmittgen, T.D.1
Livak, K.J.2
-
54
-
-
33749352265
-
Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27
-
Schubert, D., Primavesi, L., Bishopp, A., Roberts, G., Doonan, J., Jenuwein, T., and, Goodrich, J., (2006) Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27. EMBO J., 25, 4638-4649.
-
(2006)
EMBO J.
, vol.25
, pp. 4638-4649
-
-
Schubert, D.1
Primavesi, L.2
Bishopp, A.3
Roberts, G.4
Doonan, J.5
Jenuwein, T.6
Goodrich, J.7
-
55
-
-
84886446912
-
High-level expression of sugar inducible gene2 (HSI2) is a negative regulator of drought stress tolerance in Arabidopsis
-
Sharma, N., Bender, Y., Boyle, K., and, Fobert, P.R., (2013) High-level expression of sugar inducible gene2 (HSI2) is a negative regulator of drought stress tolerance in Arabidopsis. BMC Plant Biol., 13, 170.
-
(2013)
BMC Plant Biol.
, vol.13
, pp. 170
-
-
Sharma, N.1
Bender, Y.2
Boyle, K.3
Fobert, P.R.4
-
56
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Article3.
-
Smyth, G.K., (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 3, Article3.
-
(2004)
Stat. Appl. Genet. Mol. Biol.
, vol.3
-
-
Smyth, G.K.1
-
57
-
-
34247257356
-
Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes
-
Suzuki, M., Wang, H.H., and, McCarty, D.R., (2007) Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes. Plant Physiol., 143, 902-911.
-
(2007)
Plant Physiol.
, vol.143
, pp. 902-911
-
-
Suzuki, M.1
Wang, H.H.2
McCarty, D.R.3
-
58
-
-
56549125270
-
The plant B3 superfamily
-
Swaminathan, K., Peterson, K., and, Jack, T., (2008) The plant B3 superfamily. Trends Plant Sci., 13, 647-655.
-
(2008)
Trends Plant Sci.
, vol.13
, pp. 647-655
-
-
Swaminathan, K.1
Peterson, K.2
Jack, T.3
-
59
-
-
18444385522
-
Analysis of a sugar response mutant of Arabidopsis identified a novel B3 domain protein that functions as an active transcriptional repressor
-
Tsukagoshi, H., Saijo, T., Shibata, D., Morikami, A., and, Nakamura, K., (2005) Analysis of a sugar response mutant of Arabidopsis identified a novel B3 domain protein that functions as an active transcriptional repressor. Plant Physiol., 138, 675-685.
-
(2005)
Plant Physiol.
, vol.138
, pp. 675-685
-
-
Tsukagoshi, H.1
Saijo, T.2
Shibata, D.3
Morikami, A.4
Nakamura, K.5
-
60
-
-
33847784301
-
Two B3 domain transcriptional repressors prevent sugar-inducible expression of seed maturation genes in Arabidopsis seedlings
-
Tsukagoshi, H., Morikami, A., and, Nakamura, K., (2007) Two B3 domain transcriptional repressors prevent sugar-inducible expression of seed maturation genes in Arabidopsis seedlings. Proc. Natl. Acad. Sci. U. S. A., 104, 2543-2547.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A
, vol.104
, pp. 2543-2547
-
-
Tsukagoshi, H.1
Morikami, A.2
Nakamura, K.3
-
61
-
-
79751505690
-
Transcriptional activation of Arabidopsis axis patterning genes WOX8/9 links zygote polarity to embryo development
-
Ueda, M., Zhang, Z., and, Laux, T., (2011) Transcriptional activation of Arabidopsis axis patterning genes WOX8/9 links zygote polarity to embryo development. Dev. Cell, 20, 264-270.
-
(2011)
Dev. Cell
, vol.20
, pp. 264-270
-
-
Ueda, M.1
Zhang, Z.2
Laux, T.3
-
62
-
-
33947114535
-
Methylation of gibberellins by Arabidopsis GAMT1 and GAMT2
-
Varbanova, M., Yamaguchi, S., Yang, Y., et al. (2007) Methylation of gibberellins by Arabidopsis GAMT1 and GAMT2. Plant Cell, 19, 32-45.
-
(2007)
Plant Cell
, vol.19
, pp. 32-45
-
-
Varbanova, M.1
Yamaguchi, S.2
Yang, Y.3
-
63
-
-
84859064387
-
A novel HSI2 mutation in Arabidopsis affects the PHD-like domain and leads to derepression of seed-specific gene expression
-
Veerappan, V., Wang, J., Kang, M., Lee, J., Tang, Y., Jha, A.K., Shi, H., Palanivelu, R., and, Allen, R.D., (2012) A novel HSI2 mutation in Arabidopsis affects the PHD-like domain and leads to derepression of seed-specific gene expression. Planta, 236, 1-17.
-
(2012)
Planta
, vol.236
, pp. 1-17
-
-
Veerappan, V.1
Wang, J.2
Kang, M.3
Lee, J.4
Tang, Y.5
Jha, A.K.6
Shi, H.7
Palanivelu, R.8
Allen, R.D.9
-
64
-
-
84920762050
-
HSI2/VAL1 PHD-like domain promotes H3K27 trimethylation to repress the expression of seed maturation genes and complex transgenes in Arabidopsis seedlings
-
Veerappan, V., Chen, N., Reichert, A.I., and, Allen, R.D., (2014) HSI2/VAL1 PHD-like domain promotes H3K27 trimethylation to repress the expression of seed maturation genes and complex transgenes in Arabidopsis seedlings. BMC Plant Biol., 14, 293.
-
(2014)
BMC Plant Biol.
, vol.14
, pp. 293
-
-
Veerappan, V.1
Chen, N.2
Reichert, A.I.3
Allen, R.D.4
-
65
-
-
84874624769
-
Identification of direct targets of FUSCA3, a key regulator of Arabidopsis seed development
-
Wang, F., and, Perry, S.E., (2013) Identification of direct targets of FUSCA3, a key regulator of Arabidopsis seed development. Plant Physiol., 161, 1251-1264.
-
(2013)
Plant Physiol.
, vol.161
, pp. 1251-1264
-
-
Wang, F.1
Perry, S.E.2
-
66
-
-
84880697730
-
VAL- and AtBMI1-mediated H2Aub initiate the switch from embryonic to postgerminative growth in Arabidopsis
-
Yang, C., Bratzel, F., Hohmann, N., Koch, M., Turck, F., and, Calonje, M., (2013) VAL- and AtBMI1-mediated H2Aub initiate the switch from embryonic to postgerminative growth in Arabidopsis. Curr. Biol., 23, 1324-1329.
-
(2013)
Curr. Biol.
, vol.23
, pp. 1324-1329
-
-
Yang, C.1
Bratzel, F.2
Hohmann, N.3
Koch, M.4
Turck, F.5
Calonje, M.6
-
67
-
-
34249068213
-
Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis
-
Zhang, X., Clarenz, O., Cokus, S., Bernatavichute, Y.V., Pellegrini, M., Goodrich, J., and, Jacobsen, S.E., (2007) Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol., 5, e129.
-
(2007)
PLoS Biol.
, vol.5
, pp. e129
-
-
Zhang, X.1
Clarenz, O.2
Cokus, S.3
Bernatavichute, Y.V.4
Pellegrini, M.5
Goodrich, J.6
Jacobsen, S.E.7
-
68
-
-
84874515786
-
HISTONE DEACETYLASE19 interacts with HSL1 and participates in the repression of seed maturation genes in Arabidopsis seedlings
-
Zhou, Y., Tan, B., Luo, M., et al. (2013) HISTONE DEACETYLASE19 interacts with HSL1 and participates in the repression of seed maturation genes in Arabidopsis seedlings. Plant Cell, 25, 134-148.
-
(2013)
Plant Cell
, vol.25
, pp. 134-148
-
-
Zhou, Y.1
Tan, B.2
Luo, M.3
|