-
1
-
-
33847213280
-
A novel system for gene silencing using siRNAs in rice leaf and stem-derived protoplasts
-
Bart, R., Chern, M., Park, C.J., Bartley, L., and Ronald, P.C. (2006). A novel system for gene silencing using siRNAs in rice leaf and stem-derived protoplasts. Plant Methods 2: 13.
-
(2006)
Plant Methods
, vol.2
, pp. 13
-
-
Bart, R.1
Chern, M.2
Park, C.J.3
Bartley, L.4
Ronald, P.C.5
-
2
-
-
33845730777
-
Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression
-
Benhamed, M., Bertrand, C., Servet, C., and Zhou, D.X. (2006). Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression. Plant Cell 18: 2893-2903.
-
(2006)
Plant Cell
, vol.18
, pp. 2893-2903
-
-
Benhamed, M.1
Bertrand, C.2
Servet, C.3
Zhou, D.X.4
-
3
-
-
79953754165
-
Polycomb repressive complex 2 controls the embryo-to-seedling phase transition
-
Bouyer, D., Roudier, F., Heese, M., Andersen, E.D., Gey, D., Nowack, M.K., Goodrich, J., Renou, J.P., Grini, P.E., Colot, V., and Schnittger, A. (2011). Polycomb repressive complex 2 controls the embryo-to-seedling phase transition. PLoS Genet. 7: e1002014.
-
(2011)
PLoS Genet.
, vol.7
-
-
Bouyer, D.1
Roudier, F.2
Heese, M.3
Andersen, E.D.4
Gey, D.5
Nowack, M.K.6
Goodrich, J.7
Renou, J.P.8
Grini, P.E.9
Colot, V.10
Schnittger, A.11
-
4
-
-
33644785858
-
Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis
-
Braybrook, S.A., Stone, S.L., Park, S., Bui, A.Q., Le, B.H., Fischer, R.L., Goldberg, R.B., and Harada, J.J. (2006). Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis. Proc. Natl. Acad. Sci. USA 103: 3468-3473.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 3468-3473
-
-
Braybrook, S.A.1
Stone, S.L.2
Park, S.3
Bui, A.Q.4
Le, B.H.5
Fischer, R.L.6
Goldberg, R.B.7
Harada, J.J.8
-
5
-
-
0038304813
-
Coordinate repression of regulators of embryonic identity by PICKLE during germination in Arabidopsis
-
Dean Rider, S., Jr., Henderson, J.T., Jerome, R.E., Edenberg, H.J., Romero-Severson, J., and Ogas, J. (2003). Coordinate repression of regulators of embryonic identity by PICKLE during germination in Arabidopsis. Plant J. 35: 33-43.
-
(2003)
Plant J.
, vol.35
, pp. 33-43
-
-
Dean Rider, S.1
Henderson Jr., J.T.2
Jerome, R.E.3
Edenberg, H.J.4
Romero-Severson, J.5
Ogas, J.6
-
6
-
-
33745591667
-
Arabidopsis thaliana histone deacetylase 1 (AtHD1) is localized in euchromatic regions and demonstrates histone deacetylase activity in vitro
-
Fong, P.M., Tian, L., and Chen, Z.J. (2006). Arabidopsis thaliana histone deacetylase 1 (AtHD1) is localized in euchromatic regions and demonstrates histone deacetylase activity in vitro. Cell Res. 16: 479-488.
-
(2006)
Cell Res.
, vol.16
, pp. 479-488
-
-
Fong, P.M.1
Tian, L.2
Chen, Z.J.3
-
7
-
-
77950541597
-
Epigenetic regulation of peanut allergen gene Ara h 3 in developing embryos
-
Fu, G., Zhong, Y., Li, C., Li, Y., Lin, X., Liao, B., Tsang, E.W., Wu, K., and Huang, S. (2010). Epigenetic regulation of peanut allergen gene Ara h 3 in developing embryos. Planta 231: 1049-1060.
-
(2010)
Planta
, vol.231
, pp. 1049-1060
-
-
Fu, G.1
Zhong, Y.2
Li, C.3
Li, Y.4
Lin, X.5
Liao, B.6
Tsang, E.W.7
Wu, K.8
Huang, S.9
-
8
-
-
62549153134
-
Repression of seed maturation genes by a trihelix transcriptional repressor in Arabidopsis seedlings
-
Gao, M.J., Lydiate, D.J., Li, X., Lui, H., Gjetvaj, B., Hegedus, D.D., and Rozwadowski, K. (2009). Repression of seed maturation genes by a trihelix transcriptional repressor in Arabidopsis seedlings. Plant Cell 21: 54-71.
-
(2009)
Plant Cell
, vol.21
, pp. 54-71
-
-
Gao, M.J.1
Lydiate, D.J.2
Li, X.3
Lui, H.4
Gjetvaj, B.5
Hegedus, D.D.6
Rozwadowski, K.7
-
9
-
-
4544314621
-
The transcription factor FUSCA3 controls developmental timing in Arabidopsis through the hormones gibberellin and abscisic acid
-
Gazzarrini, S., Tsuchiya, Y., Lumba, S., Okamoto, M., and McCourt, P. (2004). The transcription factor FUSCA3 controls developmental timing in Arabidopsis through the hormones gibberellin and abscisic acid. Dev. Cell 7: 373-385.
-
(2004)
Dev. Cell
, vol.7
, pp. 373-385
-
-
Gazzarrini, S.1
Tsuchiya, Y.2
Lumba, S.3
Okamoto, M.4
McCourt, P.5
-
10
-
-
23744483843
-
Profiling histone modification patterns in plants using genomic tiling microarrays
-
Gendrel, A.V., Lippman, Z., Martienssen, R., and Colot, V. (2005). Profiling histone modification patterns in plants using genomic tiling microarrays. Nat. Methods 2: 213-218.
-
(2005)
Nat. Methods
, vol.2
, pp. 213-218
-
-
Gendrel, A.V.1
Lippman, Z.2
Martienssen, R.3
Colot, V.4
-
11
-
-
0026939004
-
Isolation of the Arabidopsis ABI3 gene by positional cloning
-
Giraudat, J., Hauge, B.M., Valon, C., Smalle, J., Parcy, F., and Goodman, H.M. (1992). Isolation of the Arabidopsis ABI3 gene by positional cloning. Plant Cell 4: 1251-1261.
-
(1992)
Plant Cell
, vol.4
, pp. 1251-1261
-
-
Giraudat, J.1
Hauge, B.M.2
Valon, C.3
Smalle, J.4
Parcy, F.5
Goodman, H.M.6
-
12
-
-
0027984393
-
Plant embryogenesis: Zygote to seed
-
Goldberg, R.B., de Paiva, G., and Yadegari, R. (1994). Plant embryogenesis: Zygote to seed. Science 266: 605-614.
-
(1994)
Science
, vol.266
, pp. 605-614
-
-
Goldberg, R.B.1
de Paiva, G.2
Yadegari, R.3
-
13
-
-
70649099295
-
The ASH1 HOMOLOG 2 (ASHH2) histone H3 methyltransferase is required for ovule and anther development in Arabidopsis
-
Grini, P.E., Thorstensen, T., Alm, V., Vizcay-Barrena, G., Windju, S.S., Jørstad, T.S., Wilson, Z.A., and Aalen, R.B. (2009). The ASH1 HOMOLOG 2 (ASHH2) histone H3 methyltransferase is required for ovule and anther development in Arabidopsis. PLoS ONE 4: e7817.
-
(2009)
PLoS ONE
, vol.4
-
-
Grini, P.E.1
Thorstensen, T.2
Alm, V.3
Vizcay-Barrena, G.4
Windju, S.S.5
Jørstad, T.S.6
Wilson, Z.A.7
Aalen, R.B.8
-
14
-
-
0035041743
-
Role of Arabidopsis LEAFY COTYLEDON genes in seed development
-
Harada, J.J. (2001). Role of Arabidopsis LEAFY COTYLEDON genes in seed development. J. Plant Physiol. 158: 405-409.
-
(2001)
J. Plant Physiol.
, vol.158
, pp. 405-409
-
-
Harada, J.J.1
-
15
-
-
77956334087
-
Structural insight into the zinc finger CW domain as a histone modification reader
-
He, F., et al. (2010). Structural insight into the zinc finger CW domain as a histone modification reader. Structure 18: 1127-1139.
-
(2010)
Structure
, vol.18
, pp. 1127-1139
-
-
He, F.1
-
16
-
-
12144286003
-
PICKLE acts throughout the plant to repress expression of embryonic traits and may play a role in gibberellindependent responses
-
Henderson, J.T., Li, H.C., Rider, S.D., Mordhorst, A.P., Romero-Severson, J., Cheng, J.C., Robey, J., Sung, Z.R., de Vries, S.C., and Ogas, J. (2004). PICKLE acts throughout the plant to repress expression of embryonic traits and may play a role in gibberellindependent responses. Plant Physiol. 134: 995-1005.
-
(2004)
Plant Physiol.
, vol.134
, pp. 995-1005
-
-
Henderson, J.T.1
Li, H.C.2
Rider, S.D.3
Mordhorst, A.P.4
Romero-Severson, J.5
Cheng, J.C.6
Robey, J.7
Sung, Z.R.8
de Vries, S.C.9
Ogas, J.10
-
17
-
-
79956121935
-
The CW domain, a new histone recognition module in chromatin proteins
-
Hoppmann, V., Thorstensen, T., Kristiansen, P.E., Veiseth, S.V., Rahman, M.A., Finne, K., Aalen, R.B., and Aasland, R. (2011). The CW domain, a new histone recognition module in chromatin proteins. EMBO J. 30: 1939-1952.
-
(2011)
EMBO J.
, vol.30
, pp. 1939-1952
-
-
Hoppmann, V.1
Thorstensen, T.2
Kristiansen, P.E.3
Veiseth, S.V.4
Rahman, M.A.5
Finne, K.6
Aalen, R.B.7
Aasland, R.8
-
18
-
-
79953112057
-
Rapid and reversible light-mediated chromatin modifications of Arabidopsis phytochrome A locus
-
Jang, I.C., Chung, P.J., Hemmes, H., Jung, C., and Chua, N.H. (2011). Rapid and reversible light-mediated chromatin modifications of Arabidopsis phytochrome A locus. Plant Cell 23: 459-470.
-
(2011)
Plant Cell
, vol.23
, pp. 459-470
-
-
Jang, I.C.1
Chung, P.J.2
Hemmes, H.3
Jung, C.4
Chua, N.H.5
-
19
-
-
37249022362
-
Arabidopsis relatives of the human lysine-specific Demethylase1 repress the expression of FWA and FLOWERING LOCUS C and thus promote the floral transition
-
Jiang, D., Yang, W., He, Y., and Amasino, R.M. (2007). Arabidopsis relatives of the human lysine-specific Demethylase1 repress the expression of FWA and FLOWERING LOCUS C and thus promote the floral transition. Plant Cell 19: 2975-2987.
-
(2007)
Plant Cell
, vol.19
, pp. 2975-2987
-
-
Jiang, D.1
Yang, W.2
He, Y.3
Amasino, R.M.4
-
20
-
-
67650522886
-
A novel mammalian flavindependent histone demethylase
-
Karytinos, A., Forneris, F., Profumo, A., Ciossani, G., Battaglioli, E., Binda, C., and Mattevi, A. (2009). A novel mammalian flavindependent histone demethylase. J. Biol. Chem. 284: 17775-17782.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 17775-17782
-
-
Karytinos, A.1
Forneris, F.2
Profumo, A.3
Ciossani, G.4
Battaglioli, E.5
Binda, C.6
Mattevi, A.7
-
21
-
-
77950990836
-
Chromatin regulation functions in plant abiotic stress responses
-
Kim, J.M., To, T.K., Nishioka, T., and Seki, M. (2010). Chromatin regulation functions in plant abiotic stress responses. Plant Cell Environ. 33: 604-611.
-
(2010)
Plant Cell Environ.
, vol.33
, pp. 604-611
-
-
Kim, J.M.1
To, T.K.2
Nishioka, T.3
Seki, M.4
-
22
-
-
57749119423
-
Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense
-
Kim, K.C., Lai, Z., Fan, B., and Chen, Z. (2008). Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Plant Cell 20: 2357-2371.
-
(2008)
Plant Cell
, vol.20
, pp. 2357-2371
-
-
Kim, K.C.1
Lai, Z.2
Fan, B.3
Chen, Z.4
-
23
-
-
0036897923
-
Epigenetic inheritance of expression states in plant development: The role of Polycomb group proteins
-
Köhler, C., and Grossniklaus, U. (2002). Epigenetic inheritance of expression states in plant development: The role of Polycomb group proteins. Curr. Opin. Cell Biol. 14: 773-779.
-
(2002)
Curr. Opin. Cell Biol.
, vol.14
, pp. 773-779
-
-
Köhler, C.1
Grossniklaus, U.2
-
24
-
-
2642673640
-
Embryogenesis: A new start in life
-
Laux, T., and Jurgens, G. (1997). Embryogenesis: A new start in life. Plant Cell 9: 989-1000.
-
(1997)
Plant Cell
, vol.9
, pp. 989-1000
-
-
Laux, T.1
Jurgens, G.2
-
25
-
-
70350671254
-
Regulation of oleosin expression in developing peanut (Arachis hypogaea L.) embryos through nucleosome loss and histone modifications
-
Li, C., Wu, K., Fu, G., Li, Y., Zhong, Y., Lin, X., Zhou, Y., Tian, L., and Huang, S. (2009). Regulation of oleosin expression in developing peanut (Arachis hypogaea L.) embryos through nucleosome loss and histone modifications. J. Exp. Bot. 60: 4371-4382.
-
(2009)
J. Exp. Bot.
, vol.60
, pp. 4371-4382
-
-
Li, C.1
Wu, K.2
Fu, G.3
Li, Y.4
Zhong, Y.5
Lin, X.6
Zhou, Y.7
Tian, L.8
Huang, S.9
-
26
-
-
33644874154
-
PICKLE acts during germination to repress expression of embryonic traits
-
Li, H.C., Chuang, K., Henderson, J.T., Rider, S.D., Jr., Bai, Y., Zhang, H., Fountain, M., Gerber, J., and Ogas, J. (2005). PICKLE acts during germination to repress expression of embryonic traits. Plant J. 44: 1010-1022.
-
(2005)
Plant J.
, vol.44
, pp. 1010-1022
-
-
Li, H.C.1
Chuang, K.2
Henderson, J.T.3
Rider, S.D.4
Bai Jr., Y.5
Zhang, H.6
Fountain, M.7
Gerber, J.8
Ogas, J.9
-
27
-
-
84555206210
-
Many keys to push: Diversifying the 'readership' of plant homeodomain fingers
-
Li, Y., and Li, H. (2012). Many keys to push: Diversifying the 'readership' of plant homeodomain fingers. Acta Biochim. Biophys. Sin. (Shanghai) 44: 28-39.
-
(2012)
Acta Biochim. Biophys. Sin. (Shanghai)
, vol.44
, pp. 28-39
-
-
Li, Y.1
Li, H.2
-
28
-
-
0035964869
-
Correlation between histone lysine methylation and developmental changes at the chicken beta-globin locus
-
Litt, M.D., Simpson, M., Gaszner, M., Allis, C.D., and Felsenfeld, G. (2001). Correlation between histone lysine methylation and developmental changes at the chicken beta-globin locus. Science 293: 2453-2455.
-
(2001)
Science
, vol.293
, pp. 2453-2455
-
-
Litt, M.D.1
Simpson, M.2
Gaszner, M.3
Allis, C.D.4
Felsenfeld, G.5
-
29
-
-
67651121609
-
Chromatin and DNA modifications in the Opaque2-mediated regulation of gene transcription during maize endosperm development
-
Locatelli, S., Piatti, P., Motto, M., and Rossi, V. (2009). Chromatin and DNA modifications in the Opaque2-mediated regulation of gene transcription during maize endosperm development. Plant Cell 21: 1410-1427.
-
(2009)
Plant Cell
, vol.21
, pp. 1410-1427
-
-
Locatelli, S.1
Piatti, P.2
Motto, M.3
Rossi, V.4
-
30
-
-
0032568696
-
Arabidopsis LEAFY COTYLEDON1 is sufficient to induce embryo development in vegetative cells
-
Lotan, T., Ohto, M., Yee, K.M., West, M.A., Lo, R., Kwong, R.W., Yamagishi, K., Fischer, R.L., Goldberg, R.B., and Harada, J.J. (1998). Arabidopsis LEAFY COTYLEDON1 is sufficient to induce embryo development in vegetative cells. Cell 93: 1195-1205.
-
(1998)
Cell
, vol.93
, pp. 1195-1205
-
-
Lotan, T.1
Ohto, M.2
Yee, K.M.3
West, M.A.4
Lo, R.5
Kwong, R.W.6
Yamagishi, K.7
Fischer, R.L.8
Goldberg, R.B.9
Harada, J.J.10
-
31
-
-
79959741225
-
Arabidopsis REF6 is a histone H3 lysine 27 demethylase
-
Lu, F., Cui, X., Zhang, S., Jenuwein, T., and Cao, X. (2011). Arabidopsis REF6 is a histone H3 lysine 27 demethylase. Nat. Genet. 43: 715-719.
-
(2011)
Nat. Genet.
, vol.43
, pp. 715-719
-
-
Lu, F.1
Cui, X.2
Zhang, S.3
Jenuwein, T.4
Cao, X.5
-
32
-
-
73849110791
-
Arabidopsis homolog of the yeast TREX-2 mRNA export complex: Components and anchoring nucleoporin
-
Lu, Q., Tang, X., Tian, G., Wang, F., Liu, K., Nguyen, V., Kohalmi, S.E., Keller, W.A., Tsang, E.W., Harada, J.J., Rothstein, S.J., and Cui, Y. (2010). Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin. Plant J. 61: 259-270.
-
(2010)
Plant J.
, vol.61
, pp. 259-270
-
-
Lu, Q.1
Tang, X.2
Tian, G.3
Wang, F.4
Liu, K.5
Nguyen, V.6
Kohalmi, S.E.7
Keller, W.A.8
Tsang, E.W.9
Harada, J.J.10
Rothstein, S.J.11
Cui, Y.12
-
33
-
-
0032167979
-
FUSCA3 encodes a protein with a conserved VP1/AB13-like B3 domain which is of functional importance for the regulation of seed maturation in Arabidopsis thaliana
-
Luerssen, H., Kirik, V., Herrmann, P., and Miséra, S. (1998). FUSCA3 encodes a protein with a conserved VP1/AB13-like B3 domain which is of functional importance for the regulation of seed maturation in Arabidopsis thaliana. Plant J. 15: 755-764.
-
(1998)
Plant J.
, vol.15
, pp. 755-764
-
-
Luerssen, H.1
Kirik, V.2
Herrmann, P.3
Miséra, S.4
-
34
-
-
84872028679
-
Histone deacetylase HDA6 is functionally associated with AS1 in repression of KNOX genes in Arabidopsis
-
Luo, M., Yu, C.W., Chen, F.F., Zhao, L., Tian, G., Liu, X., Cui, Y., Yang, J.Y., and Wu, K. (2012). Histone deacetylase HDA6 is functionally associated with AS1 in repression of KNOX genes in Arabidopsis. PLoS Genet. 8: e1003114.
-
(2012)
PLoS Genet.
, vol.8
-
-
Luo, M.1
Yu, C.W.2
Chen, F.F.3
Zhao, L.4
Tian, G.5
Liu, X.6
Cui, Y.7
Yang, J.Y.8
Wu, K.9
-
35
-
-
33749505862
-
Different Polycomb group complexes regulate common target genes in Arabidopsis
-
Makarevich, G., Leroy, O., Akinci, U., Schubert, D., Clarenz, O., Goodrich, J., Grossniklaus, U., and Köhler, C. (2006). Different Polycomb group complexes regulate common target genes in Arabidopsis. EMBO Rep. 7: 947-952.
-
(2006)
EMBO Rep.
, vol.7
, pp. 947-952
-
-
Makarevich, G.1
Leroy, O.2
Akinci, U.3
Schubert, D.4
Clarenz, O.5
Goodrich, J.6
Grossniklaus, U.7
Köhler, C.8
-
36
-
-
70350217260
-
Integrating the genetic and physical maps of Arabidopsis thaliana: Identification of mapped alleles of cloned essential (EMB) genes
-
Meinke, D., Sweeney, C., and Muralla, R. (2009). Integrating the genetic and physical maps of Arabidopsis thaliana: Identification of mapped alleles of cloned essential (EMB) genes. PLoS ONE 4: e7386.
-
(2009)
PLoS ONE
, vol.4
-
-
Meinke, D.1
Sweeney, C.2
Muralla, R.3
-
37
-
-
0842307061
-
Silencing of transgene transcription precedes methylation of promoter DNA and histone H3 lysine 9
-
Mutskov, V., and Felsenfeld, G. (2004). Silencing of transgene transcription precedes methylation of promoter DNA and histone H3 lysine 9. EMBO J. 23: 138-149.
-
(2004)
EMBO J.
, vol.23
, pp. 138-149
-
-
Mutskov, V.1
Felsenfeld, G.2
-
38
-
-
33645749644
-
Ordered histone modifications are associated with transcriptional poising and activation of the phaseolin promoter
-
Ng, D.W., Chandrasekharan, M.B., and Hall, T.C. (2006). Ordered histone modifications are associated with transcriptional poising and activation of the phaseolin promoter. Plant Cell 18: 119-132.
-
(2006)
Plant Cell
, vol.18
, pp. 119-132
-
-
Ng, D.W.1
Chandrasekharan, M.B.2
Hall, T.C.3
-
39
-
-
0141483281
-
The Rtf1 component of the Paf1 transcriptional elongation complex is required for ubiquitination of histone H2B
-
Ng, H.H., Dole, S., and Struhl, K. (2003). The Rtf1 component of the Paf1 transcriptional elongation complex is required for ubiquitination of histone H2B. J. Biol. Chem. 278: 33625-33628.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 33625-33628
-
-
Ng, H.H.1
Dole, S.2
Struhl, K.3
-
40
-
-
0030772968
-
Cellular differentiation regulated by gibberellin in the Arabidopsis thaliana pickle mutant
-
Ogas, J., Cheng, J.C., Sung, Z.R., and Somerville, C. (1997). Cellular differentiation regulated by gibberellin in the Arabidopsis thaliana pickle mutant. Science 277: 91-94.
-
(1997)
Science
, vol.277
, pp. 91-94
-
-
Ogas, J.1
Cheng, J.C.2
Sung, Z.R.3
Somerville, C.4
-
41
-
-
0033598804
-
PICKLE is a CHD3 chromatin-remodeling factor that regulates the transition from embryonic to vegetative development in Arabidopsis
-
Ogas, J., Kaufmann, S., Henderson, J., and Somerville, C. (1999). PICKLE is a CHD3 chromatin-remodeling factor that regulates the transition from embryonic to vegetative development in Arabidopsis. Proc. Natl. Acad. Sci. USA 96: 13839-13844.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 13839-13844
-
-
Ogas, J.1
Kaufmann, S.2
Henderson, J.3
Somerville, C.4
-
42
-
-
0034860366
-
Repression domains of class II ERF transcriptional repressors share an essential motif for active repression
-
Ohta, M., Matsui, K., Hiratsu, K., Shinshi, H., and Ohme-Takagi, M. (2001). Repression domains of class II ERF transcriptional repressors share an essential motif for active repression. Plant Cell 13: 1959-1968.
-
(2001)
Plant Cell
, vol.13
, pp. 1959-1968
-
-
Ohta, M.1
Matsui, K.2
Hiratsu, K.3
Shinshi, H.4
Ohme-Takagi, M.5
-
43
-
-
0028534830
-
Regulation of gene expression programs during Arabidopsis seed development: Roles of the ABI3 locus and of endogenous abscisic acid
-
Parcy, F., Valon, C., Raynal, M., Gaubier-Comella, P., Delseny, M., and Giraudat, J. (1994). Regulation of gene expression programs during Arabidopsis seed development: Roles of the ABI3 locus and of endogenous abscisic acid. Plant Cell 6: 1567-1582.
-
(1994)
Plant Cell
, vol.6
, pp. 1567-1582
-
-
Parcy, F.1
Valon, C.2
Raynal, M.3
Gaubier-Comella, P.4
Delseny, M.5
Giraudat, J.6
-
44
-
-
36349030778
-
The role of chromatin-remodeling factor PKL in balancing osmotic stress responses during Arabidopsis seed germination
-
Perruc, E., Kinoshita, N., and Lopez-Molina, L. (2007). The role of chromatin-remodeling factor PKL in balancing osmotic stress responses during Arabidopsis seed germination. Plant J. 52: 927-936.
-
(2007)
Plant J.
, vol.52
, pp. 927-936
-
-
Perruc, E.1
Kinoshita, N.2
Lopez-Molina, L.3
-
45
-
-
1542606770
-
The CW domain, a structural module shared amongst vertebrates, vertebrate-infecting parasites and higher plants
-
Perry, J., and Zhao, Y. (2003). The CW domain, a structural module shared amongst vertebrates, vertebrate-infecting parasites and higher plants. Trends Biochem. Sci. 28: 576-580.
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 576-580
-
-
Perry, J.1
Zhao, Y.2
-
46
-
-
35649008287
-
Histone modifications and dynamic regulation of genome accessibility in plants
-
Pfluger, J., and Wagner, D. (2007). Histone modifications and dynamic regulation of genome accessibility in plants. Curr. Opin. Plant Biol. 10: 645-652.
-
(2007)
Curr. Opin. Plant Biol.
, vol.10
, pp. 645-652
-
-
Pfluger, J.1
Wagner, D.2
-
47
-
-
3543134886
-
Metabolic profiling of the Arabidopsis pkl mutant reveals selective derepression of embryonic traits
-
Rider, S.D., Jr., Hemm, M.R., Hostetler, H.A., Li, H.C., Chapple, C., and Ogas, J. (2004). Metabolic profiling of the Arabidopsis pkl mutant reveals selective derepression of embryonic traits. Planta 219: 489-499.
-
(2004)
Planta
, vol.219
, pp. 489-499
-
-
Rider, S.D.1
Hemm Jr., M.R.2
Hostetler, H.A.3
Li, H.C.4
Chapple, C.5
Ogas, J.6
-
48
-
-
24044440820
-
LEAFY COTYLEDON 2 activation is sufficient to trigger the accumulation of oil and seed specific mRNAs in Arabidopsis leaves
-
Santos Mendoza, M., Dubreucq, B., Miquel, M., Caboche, M., and Lepiniec, L. (2005). LEAFY COTYLEDON 2 activation is sufficient to trigger the accumulation of oil and seed specific mRNAs in Arabidopsis leaves. FEBS Lett. 579: 4666-4670.
-
(2005)
FEBS Lett.
, vol.579
, pp. 4666-4670
-
-
Santos Mendoza, M.1
Dubreucq, B.2
Miquel, M.3
Caboche, M.4
Lepiniec, L.5
-
49
-
-
11144332565
-
Histone demethylation mediated by the nuclear amine oxidase homolog LSD1
-
Shi, Y., Lan, F., Matson, C., Mulligan, P., Whetstine, J.R., Cole, P.A., Casero, R.A., and Shi, Y. (2004). Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 119: 941-953.
-
(2004)
Cell
, vol.119
, pp. 941-953
-
-
Shi, Y.1
Lan, F.2
Matson, C.3
Mulligan, P.4
Whetstine, J.R.5
Cole, P.A.6
Casero, R.A.7
Shi, Y.8
-
50
-
-
34248653184
-
Rapid, transient expression of fluorescent fusion proteins in tobacco plants and generation of stably transformed plants
-
Sparkes, I.A., Runions, J., Kearns, A., and Hawes, C. (2006). Rapid, transient expression of fluorescent fusion proteins in tobacco plants and generation of stably transformed plants. Nat. Protoc. 1: 2019-2025.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 2019-2025
-
-
Sparkes, I.A.1
Runions, J.2
Kearns, A.3
Hawes, C.4
-
51
-
-
0035949505
-
LEAFY COTYLEDON2 encodes a B3 domain transcription factor that induces embryo development
-
Stone, S.L., Kwong, L.W., Yee, K.M., Pelletier, J., Lepiniec, L., Fischer, R.L., Goldberg, R.B., and Harada, J.J. (2001). LEAFY COTYLEDON2 encodes a B3 domain transcription factor that induces embryo development. Proc. Natl. Acad. Sci. USA 98: 11806-11811.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 11806-11811
-
-
Stone, S.L.1
Kwong, L.W.2
Yee, K.M.3
Pelletier, J.4
Lepiniec, L.5
Fischer, R.L.6
Goldberg, R.B.7
Harada, J.J.8
-
52
-
-
0033592999
-
Methylation of histone H3 at lysine 4 is highly conserved and correlates with transcriptionally active nuclei in Tetrahymena
-
Strahl, B.D., Ohba, R., Cook, R.G., and Allis, C.D. (1999). Methylation of histone H3 at lysine 4 is highly conserved and correlates with transcriptionally active nuclei in Tetrahymena. Proc. Natl. Acad. Sci. USA 96: 14967-14972.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 14967-14972
-
-
Strahl, B.D.1
Ohba, R.2
Cook, R.G.3
Allis, C.D.4
-
53
-
-
51649104525
-
Functional symmetry of the B3 network controlling seed development
-
Suzuki, M., and McCarty, D.R. (2008). Functional symmetry of the B3 network controlling seed development. Curr. Opin. Plant Biol. 11: 548-553.
-
(2008)
Curr. Opin. Plant Biol.
, vol.11
, pp. 548-553
-
-
Suzuki, M.1
McCarty, D.R.2
-
54
-
-
34247257356
-
Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes
-
Suzuki, M., Wang, H.H., and McCarty, D.R. (2007). Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes. Plant Physiol. 143: 902-911.
-
(2007)
Plant Physiol.
, vol.143
, pp. 902-911
-
-
Suzuki, M.1
Wang, H.H.2
McCarty, D.R.3
-
55
-
-
27944470089
-
Dynamic histone acetylation of late embryonic genes during seed germination
-
Tai, H.H., Tai, G.C., and Beardmore, T. (2005). Dynamic histone acetylation of late embryonic genes during seed germination. Plant Mol. Biol. 59: 909-925.
-
(2005)
Plant Mol. Biol.
, vol.59
, pp. 909-925
-
-
Tai, H.H.1
Tai, G.C.2
Beardmore, T.3
-
56
-
-
40749154400
-
The Arabidopsis histone deacetylases HDA6 and HDA19 contribute to the repression of embryonic properties after germination
-
Tanaka, M., Kikuchi, A., and Kamada, H. (2008). The Arabidopsis histone deacetylases HDA6 and HDA19 contribute to the repression of embryonic properties after germination. Plant Physiol. 146: 149-161.
-
(2008)
Plant Physiol.
, vol.146
, pp. 149-161
-
-
Tanaka, M.1
Kikuchi, A.2
Kamada, H.3
-
57
-
-
84870664436
-
MicroRNA-mediated repression of the seed maturation program during vegetative development in Arabidopsis
-
Tang, X., et al. (2012b). MicroRNA-mediated repression of the seed maturation program during vegetative development in Arabidopsis. PLoS Genet. 8: e1003091.
-
(2012)
PLoS Genet.
, vol.8
-
-
Tang, X.1
-
58
-
-
51549114313
-
The Arabidopsis BRAHMA chromatin-remodeling ATPase is involved in repression of seed maturation genes in leaves
-
Tang, X., Hou, A., Babu, M., Nguyen, V., Hurtado, L., Lu, Q., Reyes, J.C., Wang, A., Keller, W.A., Harada, J.J., Tsang, E.W., and Cui, Y. (2008). The Arabidopsis BRAHMA chromatin-remodeling ATPase is involved in repression of seed maturation genes in leaves. Plant Physiol. 147: 1143-1157.
-
(2008)
Plant Physiol.
, vol.147
, pp. 1143-1157
-
-
Tang, X.1
Hou, A.2
Babu, M.3
Nguyen, V.4
Hurtado, L.5
Lu, Q.6
Reyes, J.C.7
Wang, A.8
Keller, W.A.9
Harada, J.J.10
Tsang, E.W.11
Cui, Y.12
-
59
-
-
84856908907
-
Synergistic repression of the embryonic programme by SET DOMAIN GROUP 8 and EMBRYONIC FLOWER 2 in Arabidopsis seedlings
-
Tang, X., Lim, M.H., Pelletier, J., Tang, M., Nguyen, V., Keller, W.A., Tsang, E.W., Wang, A., Rothstein, S.J., Harada, J.J., and Cui, Y. (2012a). Synergistic repression of the embryonic programme by SET DOMAIN GROUP 8 and EMBRYONIC FLOWER 2 in Arabidopsis seedlings. J. Exp. Bot. 63: 1391-1404.
-
(2012)
J. Exp. Bot.
, vol.63
, pp. 1391-1404
-
-
Tang, X.1
Lim, M.H.2
Pelletier, J.3
Tang, M.4
Nguyen, V.5
Keller, W.A.6
Tsang, E.W.7
Wang, A.8
Rothstein, S.J.9
Harada, J.J.10
Cui, Y.11
-
60
-
-
80054006207
-
Detection of protein interactions in plant using a gateway compatible bimolecular fluorescence complementation (BiFC) system
-
Tian, G., Lu, Q., Zhang, L., Kohalmi, S.E., and Cui, Y. (2011). Detection of protein interactions in plant using a gateway compatible bimolecular fluorescence complementation (BiFC) system. J. Vis. Exp. 55: 3473.
-
(2011)
J. Vis. Exp.
, vol.55
, pp. 3473
-
-
Tian, G.1
Lu, Q.2
Zhang, L.3
Kohalmi, S.E.4
Cui, Y.5
-
61
-
-
0141678036
-
Genetic control of developmental changes induced by disruption of Arabidopsis histone deacetylase 1 (AtHD1) expression
-
Tian, L., Wang, J., Fong, M.P., Chen, M., Cao, H., Gelvin, S.B., and Chen, Z.J. (2003). Genetic control of developmental changes induced by disruption of Arabidopsis histone deacetylase 1 (AtHD1) expression. Genetics 165: 399-409.
-
(2003)
Genetics
, vol.165
, pp. 399-409
-
-
Tian, L.1
Wang, J.2
Fong, M.P.3
Chen, M.4
Cao, H.5
Gelvin, S.B.6
Chen, Z.J.7
-
62
-
-
33847784301
-
Two B3 domain transcriptional repressors prevent sugar-inducible expression of seed maturation genes in Arabidopsis seedlings
-
Tsukagoshi, H., Morikami, A., and Nakamura, K. (2007). Two B3 domain transcriptional repressors prevent sugar-inducible expression of seed maturation genes in Arabidopsis seedlings. Proc. Natl. Acad. Sci. USA 104: 2543-2547.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 2543-2547
-
-
Tsukagoshi, H.1
Morikami, A.2
Nakamura, K.3
-
63
-
-
18444385522
-
Analysis of a sugar response mutant of Arabidopsis identified a novel B3 domain protein that functions as an active transcriptional repressor
-
Tsukagoshi, H., Saijo, T., Shibata, D., Morikami, A., and Nakamura, K. (2005). Analysis of a sugar response mutant of Arabidopsis identified a novel B3 domain protein that functions as an active transcriptional repressor. Plant Physiol. 138: 675-685.
-
(2005)
Plant Physiol.
, vol.138
, pp. 675-685
-
-
Tsukagoshi, H.1
Saijo, T.2
Shibata, D.3
Morikami, A.4
Nakamura, K.5
-
64
-
-
27744464921
-
Seed maturation: Developing an intrusive phase to accomplish a quiescent state
-
Vicente-Carbajosa, J., and Carbonero, P. (2005). Seed maturation: Developing an intrusive phase to accomplish a quiescent state. Int. J. Dev. Biol. 49: 645-651.
-
(2005)
Int. J. Dev. Biol.
, vol.49
, pp. 645-651
-
-
Vicente-Carbajosa, J.1
Carbonero, P.2
-
65
-
-
7044229949
-
Visualization of protein interactions in living plant cells using bimolecular fluorescence complementation
-
Walter, M., Chaban, C., Schütze, K., Batistic, O., Weckermann, K., Näke, C., Blazevic, D., Grefen, C., Schumacher, K., Oecking, C., Harter, K., and Kudla, J. (2004). Visualization of protein interactions in living plant cells using bimolecular fluorescence complementation. Plant J. 40: 428-438.
-
(2004)
Plant J.
, vol.40
, pp. 428-438
-
-
Walter, M.1
Chaban, C.2
Schütze, K.3
Batistic, O.4
Weckermann, K.5
Näke, C.6
Blazevic, D.7
Grefen, C.8
Schumacher, K.9
Oecking, C.10
Harter, K.11
Kudla, J.12
-
66
-
-
41649120400
-
HDA6 is required for jasmonate response, senescence and flowering in Arabidopsis
-
Wu, K., Zhang, L., Zhou, C., Yu, C.W., and Chaikam, V. (2008). HDA6 is required for jasmonate response, senescence and flowering in Arabidopsis. J. Exp. Bot. 59: 225-234.
-
(2008)
J. Exp. Bot.
, vol.59
, pp. 225-234
-
-
Wu, K.1
Zhang, L.2
Zhou, C.3
Yu, C.W.4
Chaikam, V.5
-
67
-
-
51949088978
-
betaC1, the pathogenicity factor of TYLCCNV, interacts with AS1 to alter leaf development and suppress selective jasmonic acid responses
-
Yang, J.Y., Iwasaki, M., Machida, C., Machida, Y., Zhou, X., and Chua, N.H. (2008). betaC1, the pathogenicity factor of TYLCCNV, interacts with AS1 to alter leaf development and suppress selective jasmonic acid responses. Genes Dev. 22: 2564-2577.
-
(2008)
Genes Dev.
, vol.22
, pp. 2564-2577
-
-
Yang, J.Y.1
Iwasaki, M.2
McHida, C.3
McHida, Y.4
Zhou, X.5
Chua, N.H.6
-
68
-
-
16244366803
-
Class II histone deacetylases: From sequence to function, regulation, and clinical implication
-
Yang, X.J., and Grégoire, S. (2005). Class II histone deacetylases: from sequence to function, regulation, and clinical implication. Mol. Cell. Biol. 25: 2873-2884.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 2873-2884
-
-
Yang, X.J.1
Grégoire, S.2
-
69
-
-
34447099171
-
Arabidopsis mesophyll protoplasts: A versatile cell system for transient gene expression analysis
-
Yoo, S.D., Cho, Y.H., and Sheen, J. (2007). Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat. Protoc. 2: 1565-1572.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 1565-1572
-
-
Yoo, S.D.1
Cho, Y.H.2
Sheen, J.3
-
70
-
-
79956045378
-
HISTONE DEACETYLASE6 interacts with FLOWERING LOCUS D and regulates flowering in Arabidopsis
-
Yu, C.W., Liu, X., Luo, M., Chen, C., Lin, X., Tian, G., Lu, Q., Cui, Y., and Wu, K. (2011). HISTONE DEACETYLASE6 interacts with FLOWERING LOCUS D and regulates flowering in Arabidopsis. Plant Physiol. 156: 173-184.
-
(2011)
Plant Physiol.
, vol.156
, pp. 173-184
-
-
Yu, C.W.1
Liu, X.2
Luo, M.3
Chen, C.4
Lin, X.5
Tian, G.6
Lu, Q.7
Cui, Y.8
Wu, K.9
-
71
-
-
34249068213
-
Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis
-
Zhang, X., Clarenz, O., Cokus, S., Bernatavichute, Y.V., Pellegrini, M., Goodrich, J., and Jacobsen, S.E. (2007). Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol. 5: e129.
-
(2007)
PLoS Biol.
, vol.5
-
-
Zhang, X.1
Clarenz, O.2
Cokus, S.3
Bernatavichute, Y.V.4
Pellegrini, M.5
Goodrich, J.6
Jacobsen, S.E.7
-
72
-
-
28544449208
-
Prevention of early flowering by expression of FLOWERING LOCUS C requires methylation of histone H3 K36
-
Zhao, Z., Yu, Y., Meyer, D., Wu, C., and Shen, W.H. (2005). Prevention of early flowering by expression of FLOWERING LOCUS C requires methylation of histone H3 K36. Nat. Cell Biol. 7: 1256-1260.
-
(2005)
Nat. Cell Biol.
, vol.7
, pp. 1256-1260
-
-
Zhao, Z.1
Yu, Y.2
Meyer, D.3
Wu, C.4
Shen, W.H.5
-
73
-
-
23944456969
-
HISTONE DEACETYLASE19 is involved in jasmonic acid and ethylene signaling of pathogen response in Arabidopsis
-
Zhou, C., Zhang, L., Duan, J., Miki, B., andWu, K. (2005). HISTONE DEACETYLASE19 is involved in jasmonic acid and ethylene signaling of pathogen response in Arabidopsis. Plant Cell 17: 1196-1204.
-
(2005)
Plant Cell
, vol.17
, pp. 1196-1204
-
-
Zhou, C.1
Zhang, L.2
Duan, J.3
Miki, B.4
Wu, K.5
-
74
-
-
77954460369
-
Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression
-
Zhou, J., Wang, X., He, K., Charron, J.B., Elling, A.A., and Deng, X.W. (2010). Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression. Plant Mol. Biol. 72: 585-595.
-
(2010)
Plant Mol. Biol.
, vol.72
, pp. 585-595
-
-
Zhou, J.1
Wang, X.2
He, K.3
Charron, J.B.4
Elling, A.A.5
Deng, X.W.6
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