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Volumn 107, Issue 18, 2010, Pages 8063-8070

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors

Author keywords

Embryo; mRNA localization; Transcriptome

Indexed keywords

BETA GLUCURONIDASE; MESSENGER RNA; TRANSCRIPTION FACTOR;

EID: 77952382638     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1003530107     Document Type: Article
Times cited : (459)

References (58)
  • 3
    • 0024979237 scopus 로고
    • Regulation of gene expression during plant embryogenesis
    • Goldberg RB, Barker SJ, Perez-Grau L (1989) Regulation of gene expression during plant embryogenesis. Cell 56:149-160.
    • (1989) Cell , vol.56 , pp. 149-160
    • Goldberg, R.B.1    Barker, S.J.2    Perez-Grau, L.3
  • 5
    • 0036487177 scopus 로고    scopus 로고
    • An integrated overview of seed development in Arabidopsis thaliana ecotype WS
    • DOI 10.1016/S0981-9428(01)01350-X, PII S098194280101350X
    • Baud S, Boutin J-P, Miquel M, Lepiniec L, Rochat C (2002) Anintegrated overview of seed development in Arabidopsis thaliana ecotype WS. Plant Physiol Biochem 40:151-160. (Pubitemid 35197620)
    • (2002) Plant Physiology and Biochemistry , vol.40 , Issue.2 , pp. 151-160
    • Baud, S.1    Boutin, J.-P.2    Miquel, M.3    Lepiniec, L.4    Rochat, C.5
  • 6
    • 2942675232 scopus 로고    scopus 로고
    • Nuclear endosperm development in cereals and Arabidopsis thaliana
    • DOI 10.1105/tpc.017111
    • Olsen OA (2004) Nuclear endosperm development in cereals and Arabidopsis thaliana. Plant Cell 16(Suppl):S214-S227. (Pubitemid 38774230)
    • (2004) Plant Cell , vol.16 , Issue.SUPPL.
    • Olsen, O.-A.1
  • 7
    • 2942662256 scopus 로고    scopus 로고
    • Genetic regulation of embryonic pattern formation
    • DOI 10.1105/tpc.016014
    • Laux T, Würschum T, Breuninger H (2004) Genetic regulationof embryonic pattern formation. Plant Cell 16(Suppl):S190-S202. (Pubitemid 38774228)
    • (2004) Plant Cell , vol.16 , Issue.SUPPL.
    • Laux, T.1    Wurschum, T.2    Breuninger, H.3
  • 8
    • 25844512647 scopus 로고    scopus 로고
    • Genetic analysis of seed coat development in Arabidopsis
    • DOI 10.1016/j.tplants.2005.08.005, PII S1360138505001998
    • Haughn G, Chaudhury A (2005) Genetic analysis of seed coat development in Arabidopsis. Trends Plant Sci 10:472-477. (Pubitemid 41395268)
    • (2005) Trends in Plant Science , vol.10 , Issue.10 , pp. 472-477
    • Haughn, G.1    Chaudhury, A.2
  • 10
    • 52749095549 scopus 로고    scopus 로고
    • The importance of being essential: EMBRYO-DEFECTIVE genes in Arabidopsis
    • Devic M (2008) The importance of being essential: EMBRYO-DEFECTIVE genes in Arabidopsis. C R Biol 331:726-736.
    • (2008) C R Biol , vol.331 , pp. 726-736
    • Devic, M.1
  • 12
    • 2942651120 scopus 로고    scopus 로고
    • Imprinting and seed development
    • Gehring M, Choi Y, Fischer RL (2004) Imprinting and seed development. Plant Cell 16 (Suppl):S203-S213.
    • (2004) Plant Cell , vol.16 , Issue.SUPPL.
    • Gehring, M.1    Choi, Y.2    Fischer, R.L.3
  • 13
    • 39749196238 scopus 로고    scopus 로고
    • Cellular programming of plant gene imprinting
    • Huh JH, Bauer MJ, Hsieh TF, Fischer RL (2008) Cellular programming of plant gene imprinting. Cell 132:735-744.
    • (2008) Cell , vol.132 , pp. 735-744
    • Huh, J.H.1    Bauer, M.J.2    Hsieh, T.F.3    Fischer, R.L.4
  • 14
    • 44449154262 scopus 로고    scopus 로고
    • Differential Expression of WOX Genes Mediates Apical-Basal Axis Formation in the Arabidopsis Embryo
    • DOI 10.1016/j.devcel.2008.03.008, PII S1534580708001160
    • Breuninger H, Rikirsch E, Hermann M, Ueda M, Laux T (2008) Differential expression of WOX genes mediates apical-basal axis formation in the Arabidopsis embryo. Dev Cell 14:867-876. (Pubitemid 351757195)
    • (2008) Developmental Cell , vol.14 , Issue.6 , pp. 867-876
    • Breuninger, H.1    Rikirsch, E.2    Hermann, M.3    Ueda, M.4    Laux, T.5
  • 15
    • 56549091074 scopus 로고    scopus 로고
    • LECs go crazy in embryo development
    • Braybrook SA, Harada JJ (2008) LECs go crazy in embryo development. Trends Plant Sci 13:624-630.
    • (2008) Trends Plant Sci , vol.13 , pp. 624-630
    • Braybrook, S.A.1    Harada, J.J.2
  • 16
    • 33644785858 scopus 로고    scopus 로고
    • Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis
    • Braybrook SA, et al. (2006) Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis. Proc Natl Acad Sci USA 103:3468-3473.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 3468-3473
    • Braybrook, S.A.1
  • 17
    • 0037341191 scopus 로고    scopus 로고
    • Module-specific regulation of the beta-phaseolin promoter during embryogenesis
    • Chandrasekharan MB, Bishop KJ, Hall TC (2003) Module-specific regulation of the beta-phaseolin promoter during embryogenesis. Plant J 33:853-866.
    • (2003) Plant J , vol.33 , pp. 853-866
    • Chandrasekharan, M.B.1    Bishop, K.J.2    Hall, T.C.3
  • 18
    • 0346258170 scopus 로고    scopus 로고
    • Regulation of storage protein gene expression in Arabidopsis
    • DOI 10.1242/dev.00814
    • Kroj T, Savino G, Valon C, Giraudat J, Parcy F (2003) Regulation of storage protein gene expression in Arabidopsis. Development 130:6065-6073. (Pubitemid 38008808)
    • (2003) Development , vol.130 , Issue.24 , pp. 6065-6073
    • Kroj, T.1    Savino, G.2    Valon, C.3    Giraudat, J.4    Parcy, F.5
  • 19
  • 20
    • 66249115987 scopus 로고    scopus 로고
    • Arabidopsis NF-YB subunits LEC1 and LEC1-LIKE activate transcription by interacting with seed-specific ABRE-binding factors
    • Yamamoto A, et al. (2009) Arabidopsis NF-YB subunits LEC1 and LEC1-LIKE activate transcription by interacting with seed-specific ABRE-binding factors. Plant J 58:843-856.
    • (2009) Plant J , vol.58 , pp. 843-856
    • Yamamoto, A.1
  • 21
    • 62549106668 scopus 로고    scopus 로고
    • Identification of cis-regulatory sequences that activate transcription in the suspensor of plant embryos
    • Kawashima T, et al. (2009) Identification of cis-regulatory sequences that activate transcription in the suspensor of plant embryos. Proc Natl Acad Sci USA 106:3627-3632.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 3627-3632
    • Kawashima, T.1
  • 22
    • 0029360789 scopus 로고
    • Overlap of Viviparous1 (VP1) and abscisic acid response elements in the Empromoter: G-box elements are sufficient but not necessary for VP1 transactivation
    • Vasil V, et al. (1995) Overlap of Viviparous1 (VP1) and abscisic acid response elements in the Empromoter: G-box elements are sufficient but not necessary for VP1 transactivation. Plant Cell 7:1511-1518.
    • (1995) Plant Cell , vol.7 , pp. 1511-1518
    • Vasil, V.1
  • 23
    • 47849128399 scopus 로고    scopus 로고
    • A gene expression atlas of the model legume Medicago truncatula
    • Benedito VA, et al. (2008) A gene expression atlas of the model legume Medicago truncatula. Plant J 55:504-513.
    • (2008) Plant J , vol.55 , pp. 504-513
    • Benedito, V.A.1
  • 24
    • 24344488725 scopus 로고    scopus 로고
    • Organ-specific expression of arabidopsis genome during development
    • DOI 10.1104/pp.104.054783
    • Ma L, et al. (2005) Organ-specific expression of Arabidopsis genome during development. Plant Physiol 138:80-91. (Pubitemid 43138109)
    • (2005) Plant Physiology , vol.138 , Issue.1 , pp. 80-91
    • Ma, L.1    Sun, N.2    Liu, X.3    Jiao, Y.4    Zhao, H.5    Xing, W.D.6
  • 26
    • 59149095771 scopus 로고    scopus 로고
    • A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies
    • Jiao Y, et al. (2009) A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies. Nat Genet 41:258-263.
    • (2009) Nat Genet , vol.41 , pp. 258-263
    • Jiao, Y.1
  • 28
    • 0035983837 scopus 로고    scopus 로고
    • W
    • DOI 10.1105/tpc.000877
    • Ruuska SA, Girke T, Benning C, Ohlrogge JB (2002) Contrapuntal networks of gene expression during Arabidopsis seed filling. Plant Cell 14:1191-1206. (Pubitemid 34780427)
    • (2002) Plant Cell , vol.14 , Issue.6 , pp. 1191-1206
    • Ruuska, S.A.1    Girke, T.2    Benning, C.3    Ohlrogge, J.B.4
  • 29
    • 34247282083 scopus 로고    scopus 로고
    • Transcriptional profiling of the Arabidopsis embryo
    • Spencer MW, Casson SA, Lindsey K (2007) Transcriptional profiling of the Arabidopsis embryo. Plant Physiol 143:924-940.
    • (2007) Plant Physiol , vol.143 , pp. 924-940
    • Spencer, M.W.1    Casson, S.A.2    Lindsey, K.3
  • 30
    • 46249092151 scopus 로고    scopus 로고
    • Gene expression profiling of M. truncatula transcription factors identifies putative regulators of grain legume seed filling
    • Verdier J, et al. (2008) Gene expression profiling of M. truncatula transcription factors identifies putative regulators of grain legume seed filling. Plant Mol Biol 67:567-580.
    • (2008) Plant Mol Biol , vol.67 , pp. 567-580
    • Verdier, J.1
  • 31
    • 57749096998 scopus 로고    scopus 로고
    • Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation
    • Day RC, Herridge RP, Ambrose BA, Macknight RC (2008) Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation. Plant Physiol 148:1964-1984.
    • (2008) Plant Physiol , vol.148 , pp. 1964-1984
    • Day, R.C.1    Herridge, R.P.2    Ambrose, B.A.3    Macknight, R.C.4
  • 33
    • 58149481232 scopus 로고    scopus 로고
    • Properties of developmental gene regulatory networks
    • Davidson EH, Levine MS (2008) Properties of developmental gene regulatory networks. Proc Natl Acad Sci USA 105:20063-20066.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 20063-20066
    • Davidson, E.H.1    Levine, M.S.2
  • 34
    • 0343621499 scopus 로고    scopus 로고
    • Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana
    • DOI 10.1038/47134
    • Mayer K, et al. (1999) Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Nature 402:769-777. (Pubitemid 30012516)
    • (1999) Nature , vol.402 , Issue.6763 , pp. 769-777
    • Bevan, M.1
  • 36
    • 2342501846 scopus 로고    scopus 로고
    • Development and evaluation of an Arabidopsis whole genome Affymetrix probe array
    • DOI 10.1111/j.1365-313X.2004.02061.x
    • Redman JC, Haas BJ, Tanimoto G, Town CD (2004) Development and evaluation of an Arabidopsis whole genome Affymetrix probe array. Plant J 38:545-561. (Pubitemid 38601050)
    • (2004) Plant Journal , vol.38 , Issue.3 , pp. 545-561
    • Redman, J.C.1    Haas, B.J.2    Tanimoto, G.3    Town, C.D.4
  • 38
    • 0033919076 scopus 로고    scopus 로고
    • Arabidopsis seed coat development: Morphological differentiation of the outer integument
    • DOI 10.1046/j.1365-313X.2000.00756.x
    • Windsor JB, Symonds VV, Mendenhall J, Lloyd AM (2000) Arabidopsis seed coat development: morphological differentiation of the outer integument. Plant J 22:483-493. (Pubitemid 30427757)
    • (2000) Plant Journal , vol.22 , Issue.6 , pp. 483-493
    • Windsor, J.B.1    Symonds, V.V.2    Mendenhall, J.3    Lloyd, A.M.4
  • 39
    • 0035542785 scopus 로고    scopus 로고
    • MYB61 is required for mucilage deposition and extrusion in the arabidopsis seed coat
    • DOI 10.1105/tpc.13.12.2777
    • Penfield S, Meissner RC, Shoue DA, Carpita NC, Bevan MW (2001) MYB61 is required for mucilage deposition and extrusion in the Arabidopsis seed coat. Plant Cell 13:2777-2791. (Pubitemid 34088640)
    • (2001) Plant Cell , vol.13 , Issue.12 , pp. 2777-2791
    • Penfield, S.1    Meissner, R.C.2    Shoue, D.A.3    Carpita, N.C.4    Bevan, M.W.5
  • 40
    • 57549101679 scopus 로고    scopus 로고
    • Transcriptional regulation by an NAC (NAM-ATAF1,2-CUC2) transcription factor attenuates ABA signalling for efficient basal defence towards Blumeria graminis f. sp. hordei in Arabidopsis
    • Jensen MK, et al. (2008) Transcriptional regulation by an NAC (NAM-ATAF1,2-CUC2) transcription factor attenuates ABA signalling for efficient basal defence towards Blumeria graminis f. sp. hordei in Arabidopsis. Plant J 56:867-880.
    • (2008) Plant J , vol.56 , pp. 867-880
    • Jensen, M.K.1
  • 41
    • 70349233864 scopus 로고    scopus 로고
    • A pivotal role of the basic leucine zipper transcription factor bZIP53 in the regulation of Arabidopsis seed maturation gene expression based on heterodimerization and protein complex formation
    • Alonso R, et al. (2009) A pivotal role of the basic leucine zipper transcription factor bZIP53 in the regulation of Arabidopsis seed maturation gene expression based on heterodimerization and protein complex formation. Plant Cell 21:1747-1761.
    • (2009) Plant Cell , vol.21 , pp. 1747-1761
    • Alonso, R.1
  • 42
    • 17444401034 scopus 로고    scopus 로고
    • WUSCHEL is a primary target for transcriptional regulation by SPLAYED in dynamic control of stem cell fate in Arabidopsis
    • DOI 10.1101/gad.1276305
    • Kwon CS, Chen C, Wagner D (2005) WUSCHEL is a primary target for transcriptional regulation by SPLAYED in dynamic control of stem cell fate in Arabidopsis. Genes Dev 19:992-1003. (Pubitemid 40548066)
    • (2005) Genes and Development , vol.19 , Issue.8 , pp. 992-1003
    • Kwon, C.S.1    Chen, C.2    Wagner, D.3
  • 43
    • 34248207000 scopus 로고    scopus 로고
    • A novel transcriptional cascade regulating expression of heat stress proteins during seed development of Arabidopsis
    • DOI 10.1105/tpc.106.048165
    • Kotak S, Vierling E, Bäumlein H, von Koskull-Döring P (2007) A novel transcriptional cascade regulating expression of heat stress proteins during seed development of Arabidopsis. Plant Cell 19:182-195. (Pubitemid 46852710)
    • (2007) Plant Cell , vol.19 , Issue.1 , pp. 182-195
    • Kotak, S.1    Vierling, E.2    Baumlein, H.3    Von Koskull-Dorlng, P.4
  • 44
    • 0035041743 scopus 로고    scopus 로고
    • Role of arabidopsis LEAFY COTYLEDON genes in seed development
    • Harada JJ (2001) Role of Arabidopsis LEAFY COTYLEDON genes in seed development. J Plant Physiol 158:405-409. (Pubitemid 32378890)
    • (2001) Journal of Plant Physiology , vol.158 , Issue.4 , pp. 405-409
    • Harada, J.J.1
  • 45
    • 0032029096 scopus 로고    scopus 로고
    • PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis
    • DOI 10.1105/tpc.10.3.383
    • Li Z, Thomas TL (1998) PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 10:383-398. (Pubitemid 28553953)
    • (1998) Plant Cell , vol.10 , Issue.3 , pp. 383-398
    • Li, Z.1    Thomas, T.L.2
  • 46
    • 0035916355 scopus 로고    scopus 로고
    • Polycomb group genes control pattern formation in plant seed
    • DOI 10.1016/S0960-9822(01)00072-0
    • Sørensen MB, Chaudhury AM, Robert H, Bancharel E, Berger F (2001) Polycomb group genes control pattern formation in plant seed. Curr Biol 11:277-281. (Pubitemid 32185332)
    • (2001) Current Biology , vol.11 , Issue.4 , pp. 277-281
    • Sorensen, M.B.1    Chaudhury, A.M.2    Robert, H.3    Bancharel, E.4    Berger, F.5
  • 48
    • 0001210657 scopus 로고
    • Transcriptional and post-transcriptional regulation of soybean seed protein mRNA levels
    • Walling L, Drews GN, Goldberg RB (1986) Transcriptional and post-transcriptional regulation of soybean seed protein mRNA levels. Proc Natl Acad Sci USA 83:2123-2127.
    • (1986) Proc Natl Acad Sci USA , vol.83 , pp. 2123-2127
    • Walling, L.1    Drews, G.N.2    Goldberg, R.B.3
  • 49
    • 0019891152 scopus 로고
    • Abundance, diversity, and regulation of mRNA sequence sets in soybean embryogenesis
    • Goldberg RB, Hoschek G, Tam SH, Ditta GS, Breidenbach RW (1981) Abundance, diversity, and regulation of mRNA sequence sets in soybean embryogenesis. Dev Biol 83:201-217.
    • (1981) Dev Biol , vol.83 , pp. 201-217
    • Goldberg, R.B.1    Hoschek, G.2    Tam, S.H.3    Ditta, G.S.4    Breidenbach, R.W.5
  • 50
    • 0019874701 scopus 로고
    • Developmental biochemistry of cottonseed embryogenesis and germination: Changing messenger ribonucleic acid populations as shown by reciprocal heterologous complementary deoxyribonucleic acid - Messenger ribonucleic acid hybridization
    • Galau GA, Dure L, 3rd (1981) Developmental biochemistry of cottonseed embryogenesis and germination: Changing messenger ribonucleic acid populations as shown by reciprocal heterologous complementary deoxyribonucleic acid - messenger ribonucleic acid hybridization. Biochemistry 20:4169-4178.
    • (1981) Biochemistry , vol.20 , pp. 4169-4178
    • Galau, G.A.1    Dure III, L.2
  • 53
    • 0042847315 scopus 로고    scopus 로고
    • Binding site selection for the plant MADS domain protein AGL15. An in vitro and in vivo study
    • DOI 10.1074/jbc.M212976200
    • Tang W, Perry SE (2003) Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study. J Biol Chem 278:28154-28159. (Pubitemid 36900014)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.30 , pp. 28154-28159
    • Tang, W.1    Perry, S.E.2
  • 54
    • 1542475839 scopus 로고    scopus 로고
    • Arabidopsis transcript profiling on Affymetrix GeneChip arrays
    • DOI 10.1023/B:PLAN.0000019069.23317.97
    • Hennig L, Menges M, Murray JA, Gruissem W (2003) Arabidopsis transcript profiling on Affymetrix GeneChip arrays. Plant Mol Biol 53:457-465. (Pubitemid 38345340)
    • (2003) Plant Molecular Biology , vol.53 , Issue.4 , pp. 457-465
    • Hennig, L.1    Menges, M.2    Murray, J.A.H.3    Gruissem, W.4
  • 55
    • 0034524684 scopus 로고    scopus 로고
    • Large-scale profiling of the Arabidopsis transcriptome
    • Zhu T, Wang X (2000) Large-scale profiling of the Arabidopsis transcriptome. Plant Physiol 124:1472-1476.
    • (2000) Plant Physiol , vol.124 , pp. 1472-1476
    • Zhu, T.1    Wang, X.2
  • 56
    • 17744413236 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
    • research
    • Li C, Wong WH (2001) Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application.Genome Biol, 2: research0032.0031-0032.0011.
    • (2001) Genome Biol , vol.2
    • Li, C.1    Wong, W.H.2


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