-
1
-
-
0032953881
-
Inferring the fitness effects of DNA mutations from polymorphism and divergence data: Statistical power to detect directional selection under stationarity and free recombination
-
Akashi, H. 1999. Inferring the fitness effects of DNA mutations from polymorphism and divergence data: Statistical power to detect directional selection under stationarity and free recombination. Genetics 151: 221-238.
-
(1999)
Genetics
, vol.151
, pp. 221-238
-
-
Akashi, H.1
-
2
-
-
0033862962
-
The epidemiology of pathogenic mitochondrial DNA mutations
-
Chinnery, P.F., Johnson, M.A., Wardell, T.M., Singh-Kler, R., Hayes, C., Brown, D.T., Taylor, R.W., Bindoff, L.A., and Turnbull, D.M. 2000. The epidemiology of pathogenic mitochondrial DNA mutations. Ann. Neurol. 48: 188-193.
-
(2000)
Ann. Neurol.
, vol.48
, pp. 188-193
-
-
Chinnery, P.F.1
Johnson, M.A.2
Wardell, T.M.3
Singh-Kler, R.4
Hayes, C.5
Brown, D.T.6
Taylor, R.W.7
Bindoff, L.A.8
Turnbull, D.M.9
-
3
-
-
0013430113
-
-
The University of Chicago Press, Chicago
-
Coppinger, R. and Coppinger, L. 2001. Dogs. The University of Chicago Press, Chicago.
-
(2001)
Dogs
-
-
Coppinger, R.1
Coppinger, L.2
-
5
-
-
0034924997
-
Positive and negative selection on the human genome
-
Fay, J.C., Wyckoff, G.J., and Wu, C.I. 2001. Positive and negative selection on the human genome. Genetics 158: 1227-1234.
-
(2001)
Genetics
, vol.158
, pp. 1227-1234
-
-
Fay, J.C.1
Wyckoff, G.J.2
Wu, C.I.3
-
6
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution Int. J. Org. Evolution 39: 783-791.
-
(1985)
Evolution Int. J. Org. Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
7
-
-
11144230088
-
Molecular origins of rapid and continuous morphological evolution
-
Fondon III, J.W. and Garner, H.R. 2004. Molecular origins of rapid and continuous morphological evolution. Proc. Natl. Acad. Sci. 101: 18058-18063.
-
(2004)
Proc. Natl. Acad. Sci.
, vol.101
, pp. 18058-18063
-
-
Fondon III, J.W.1
Garner, H.R.2
-
8
-
-
0028168856
-
A codon-based model of nucleotide substitution for protein-coding DNA sequences
-
Goldman, N. and Yang, Z. 1994. A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11: 725-736.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 725-736
-
-
Goldman, N.1
Yang, Z.2
-
9
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa, M., Kishino, H., and Yano, T. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22: 160-174.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
10
-
-
0031729188
-
Preponderance of slightly deleterious polymorphism in mitochondrial DNA: Nonsynonymous/synonymous rate ratio is much higher within species than between species
-
Hasegawa, M., Cao, Y., and Yang, Z. 1998. Preponderance of slightly deleterious polymorphism in mitochondrial DNA: Nonsynonymous/synonymous rate ratio is much higher within species than between species. Mol. Biol. Evol. 15: 1499-1505.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1499-1505
-
-
Hasegawa, M.1
Cao, Y.2
Yang, Z.3
-
11
-
-
0028341048
-
Rapid evolution of a heteroplasmic repetitive sequence in the mitochondrial DNA control region of carnivores
-
Hoelzel, A.R., Lopez, J.V., Dover, G.A., and O'Brien, S.J. 1994. Rapid evolution of a heteroplasmic repetitive sequence in the mitochondrial DNA control region of carnivores. J. Mol. Evol. 39: 191-199.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 191-199
-
-
Hoelzel, A.R.1
Lopez, J.V.2
Dover, G.A.3
O'Brien, S.J.4
-
12
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogeny
-
Huelsenbeck, J.P. and Ronquist, F. 2001. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
13
-
-
0034619822
-
Mitochondrial genome variation and the origin of modern humans
-
Ingman, M., Kaessmann, H., Pääbo, S., and Gyllensten, U. 2000. Mitochondrial genome variation and the origin of modern humans. Nature 408: 708-713.
-
(2000)
Nature
, vol.408
, pp. 708-713
-
-
Ingman, M.1
Kaessmann, H.2
Pääbo, S.3
Gyllensten, U.4
-
14
-
-
33244457956
-
The role of selection in the evolution of human mitochondrial genomes
-
Kivisild, T., Shen, P., Wall, D.P., Do, B., Sung, R., Davis, K., Passarino, G., Underhill, P.A., Scharfe, C., Torroni, A., et al. 2006. The role of selection in the evolution of human mitochondrial genomes. Genetics 172: 373-387.
-
(2006)
Genetics
, vol.172
, pp. 373-387
-
-
Kivisild, T.1
Shen, P.2
Wall, D.P.3
Do, B.4
Sung, R.5
Davis, K.6
Passarino, G.7
Underhill, P.A.8
Scharfe, C.9
Torroni, A.10
-
15
-
-
0015162354
-
On the constancy of the evolutionary rate of cistrons
-
Ohta, T. and Kimura, M. 1971. On the constancy of the evolutionary rate of cistrons. J. Mol. Evol. 1: 18-25.
-
(1971)
J. Mol. Evol.
, vol.1
, pp. 18-25
-
-
Ohta, T.1
Kimura, M.2
-
16
-
-
0033794759
-
Unleashing the canine genome
-
Ostrander, E.A. and Kruglyak, L. 2000. Unleashing the canine genome. Genome Res. 10: 1271-1274.
-
(2000)
Genome Res.
, vol.10
, pp. 1271-1274
-
-
Ostrander, E.A.1
Kruglyak, L.2
-
17
-
-
0030994606
-
The probability of fixation in populations of changing size
-
Otto, S.P. and Whitlock, M.C. 1997. The probability of fixation in populations of changing size. Genetics 146: 723-733.
-
(1997)
Genetics
, vol.146
, pp. 723-733
-
-
Otto, S.P.1
Whitlock, M.C.2
-
18
-
-
2442653898
-
Genetic structure of the purebred domestic dog
-
Parker, H.G., Kim, L.V., Sutter, N.B., Carlson, S., Lorentzen, T.D., Malek, T.B., Johnson, G.S., DeFrance, H.B., Ostrander, E.A., and Kruglyak, L. 2004. Genetic structure of the purebred domestic dog. Science 304: 1160-1166.
-
(2004)
Science
, vol.304
, pp. 1160-1166
-
-
Parker, H.G.1
Kim, L.V.2
Sutter, N.B.3
Carlson, S.4
Lorentzen, T.D.5
Malek, T.B.6
Johnson, G.S.7
DeFrance, H.B.8
Ostrander, E.A.9
Kruglyak, L.10
-
19
-
-
0041836283
-
Estimating the distribution of fitness effects from DNA sequence data: Implications for the molecular clock
-
Piganeau, G. and Eyre-Walker, A. 2003. Estimating the distribution of fitness effects from DNA sequence data: Implications for the molecular clock. Proc. Natl. Acad. Sci. 100: 10335-10340.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 10335-10340
-
-
Piganeau, G.1
Eyre-Walker, A.2
-
20
-
-
0031773680
-
MODELTEST: Testing the model of DNA substitution
-
Posada, D. and Crandall, K.A. 1998. MODELTEST: Testing the model of DNA substitution. Bioinformatics 14: 817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
21
-
-
0347356538
-
Effects of purifying and adaptive selection on regional variation in human mtDNA
-
Ruiz-Pesini, E., Mishmar, D., Brandon, M., Procaccio, V., and Wallace, D.C. 2004. Effects of purifying and adaptive selection on regional variation in human mtDNA. Science 303: 223-226.
-
(2004)
Science
, vol.303
, pp. 223-226
-
-
Ruiz-Pesini, E.1
Mishmar, D.2
Brandon, M.3
Procaccio, V.4
Wallace, D.C.5
-
22
-
-
2442713362
-
The earliest Ice Age dogs: Evidence from Eliseevichi
-
Sablin, M.V. and Khlopachev, G.A. 2002. The earliest Ice Age dogs: Evidence from Eliseevichi. Curr. Anthropol. 43: 795-799.
-
(2002)
Curr. Anthropol.
, vol.43
, pp. 795-799
-
-
Sablin, M.V.1
Khlopachev, G.A.2
-
23
-
-
3042757551
-
From wolf to domestic dog: Changes in brain gene expression
-
Saetre, P., Lindberg, J., Leonard, J.A., Olsson, K., Pettersson, U., Ellegren, H., Bergstrom, T.F., Vilà, C., and Jazin, E. 2004. From wolf to domestic dog: Changes in brain gene expression. Brain Res. Mol. Brain Res. 126: 198-206.
-
(2004)
Brain Res. Mol. Brain Res.
, vol.126
, pp. 198-206
-
-
Saetre, P.1
Lindberg, J.2
Leonard, J.A.3
Olsson, K.4
Pettersson, U.5
Ellegren, H.6
Bergstrom, T.F.7
Vilà, C.8
Jazin, E.9
-
24
-
-
0015927177
-
Generation time and genomic evolution in primates
-
Sarich, V.M. and Wilson, A.C. 1973. Generation time and genomic evolution in primates. Science 179: 1144-1147.
-
(1973)
Science
, vol.179
, pp. 1144-1147
-
-
Sarich, V.M.1
Wilson, A.C.2
-
25
-
-
2242463993
-
Genetic evidence for an East Asian origin of domestic dogs
-
Savolainen, P., Zhang, Y.P., Luo, J., Lundeberg, J., and Leitner, T. 2002. Genetic evidence for an East Asian origin of domestic dogs. Science 298: 1610-1613.
-
(2002)
Science
, vol.298
, pp. 1610-1613
-
-
Savolainen, P.1
Zhang, Y.P.2
Luo, J.3
Lundeberg, J.4
Leitner, T.5
-
26
-
-
9444243847
-
Dog star rising: The canine genetic system
-
Sutter, N.B. and Ostrander, E.A. 2004. Dog star rising: The canine genetic system. Nat. Rev. Genet. 5: 900-910.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 900-910
-
-
Sutter, N.B.1
Ostrander, E.A.2
-
28
-
-
0030616576
-
Multiple and ancient origins of the domestic dog
-
Vilà, C., Savolainen, P., Maldonado, J.E., Amorim, I.R., Rice, J.E., Honeycutt, R.L., Crandall, K.A., Lundeberg, J., and Wayne, R.K. 1997. Multiple and ancient origins of the domestic dog. Science 276: 1687-1689.
-
(1997)
Science
, vol.276
, pp. 1687-1689
-
-
Vilà, C.1
Savolainen, P.2
Maldonado, J.E.3
Amorim, I.R.4
Rice, J.E.5
Honeycutt, R.L.6
Crandall, K.A.7
Lundeberg, J.8
Wayne, R.K.9
-
29
-
-
0033389838
-
Mitochondrial DNA phylogeography and population history of the Gray Wolf Canis lupus
-
Vilà, C., Amorim, I.R., Leonard, J.A., Posada, D., Castroviejo, J., Petrucci-Fonseca, F., Crandall, K.A., Ellegren, H., and Wayne, R.K. 1999. Mitochondrial DNA phylogeography and population history of the Gray Wolf Canis lupus. Mol. Ecol. 8: 2089-2103.
-
(1999)
Mol. Ecol.
, vol.8
, pp. 2089-2103
-
-
Vilà, C.1
Amorim, I.R.2
Leonard, J.A.3
Posada, D.4
Castroviejo, J.5
Petrucci-Fonseca, F.6
Crandall, K.A.7
Ellegren, H.8
Wayne, R.K.9
-
30
-
-
15244345942
-
Genes of domestic mammals augmented by backcrossing with wild ancestors
-
Vilà, C., Seddon, J., and Ellegren, H. 2005. Genes of domestic mammals augmented by backcrossing with wild ancestors. Trends Genet. 21: 214-218.
-
(2005)
Trends Genet.
, vol.21
, pp. 214-218
-
-
Vilà, C.1
Seddon, J.2
Ellegren, H.3
-
31
-
-
28844501661
-
Short interspersed elements (SINEs) are a major source of canine genomic diversity
-
Wang, W. and Kirkness, E.F. 2005. Short interspersed elements (SINEs) are a major source of canine genomic diversity. Genome Res. 15: 1798-1808.
-
(2005)
Genome Res.
, vol.15
, pp. 1798-1808
-
-
Wang, W.1
Kirkness, E.F.2
-
32
-
-
3142684241
-
Consequences of domestication: Morphological diversity of the dog
-
eds. A. Ruvinsky and J. Sampson, CABI Publishing, Oxon, UK
-
Wayne, R.K. 2001. Consequences of domestication: Morphological diversity of the dog. In The genetics of the dog (eds. A. Ruvinsky and J. Sampson), pp. 43-60. CABI Publishing, Oxon, UK.
-
(2001)
The Genetics of the Dog
, pp. 43-60
-
-
Wayne, R.K.1
-
33
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang, Z. 1997. PAML: A program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
34
-
-
0033921902
-
Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes
-
Zhang, J. 2000. Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes. J. Mol. Evol. 50: 56-68.
-
(2000)
J. Mol. Evol.
, vol.50
, pp. 56-68
-
-
Zhang, J.1
|