-
1
-
-
84896390510
-
Structured illumination microscopy for superresolution
-
Allen J.R., Ross S.T., Davidson M.W. Structured illumination microscopy for superresolution. Chemphyschem 2014, 15:566-576.
-
(2014)
Chemphyschem
, vol.15
, pp. 566-576
-
-
Allen, J.R.1
Ross, S.T.2
Davidson, M.W.3
-
2
-
-
84867760568
-
In vivo architecture and action of bacterial structural maintenance of chromosome proteins
-
Badrinarayanan A., Reyes-Lamothe R., Uphoff S., Leake M.C., Sherratt D.J. In vivo architecture and action of bacterial structural maintenance of chromosome proteins. Science 2012, 338:528-531.
-
(2012)
Science
, vol.338
, pp. 528-531
-
-
Badrinarayanan, A.1
Reyes-Lamothe, R.2
Uphoff, S.3
Leake, M.C.4
Sherratt, D.J.5
-
3
-
-
84890574571
-
Partitioning of RNA polymerase activity in live Escherichia coli from analysis of single-molecule diffusive trajectories
-
Bakshi S., Dalrymple R.M., Li W., Choi H., Weisshaar J.C. Partitioning of RNA polymerase activity in live Escherichia coli from analysis of single-molecule diffusive trajectories. Biophys. J. 2013, 105:2676-2686.
-
(2013)
Biophys. J.
, vol.105
, pp. 2676-2686
-
-
Bakshi, S.1
Dalrymple, R.M.2
Li, W.3
Choi, H.4
Weisshaar, J.C.5
-
4
-
-
84925437387
-
"Breaking up is hard to do": the formation and resolution of sister chromatid intertwines
-
Baxter J. "Breaking up is hard to do": the formation and resolution of sister chromatid intertwines. J. Mol. Biol. 2015, 427:590-607.
-
(2015)
J. Mol. Biol.
, vol.427
, pp. 590-607
-
-
Baxter, J.1
-
5
-
-
84857439388
-
A model for chromosome condensation based on the interplay between condensin and topoisomerase II
-
Baxter J., Aragón L. A model for chromosome condensation based on the interplay between condensin and topoisomerase II. Trends Genet. 2012, 28:110-117.
-
(2012)
Trends Genet.
, vol.28
, pp. 110-117
-
-
Baxter, J.1
Aragón, L.2
-
6
-
-
84891810056
-
Condensin aids sister chromatid decatenation by topoisomerase II
-
Charbin A., Bouchoux C., Uhlmann F. Condensin aids sister chromatid decatenation by topoisomerase II. Nucleic Acids Res. 2014, 42:340-348.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 340-348
-
-
Charbin, A.1
Bouchoux, C.2
Uhlmann, F.3
-
7
-
-
22544467771
-
The structural basis for substrate specificity in DNA topoisomerase IV
-
Corbett K.D., Schoeffler A.J., Thomsen N.D., Berger J.M. The structural basis for substrate specificity in DNA topoisomerase IV. J. Mol. Biol. 2005, 351:545-561.
-
(2005)
J. Mol. Biol.
, vol.351
, pp. 545-561
-
-
Corbett, K.D.1
Schoeffler, A.J.2
Thomsen, N.D.3
Berger, J.M.4
-
8
-
-
0034669232
-
Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements
-
Crisona N.J., Strick T.R., Bensimon D., Croquette V., Cozzarelli N.R. Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements. Genes Dev. 2000, 14:2881-2892.
-
(2000)
Genes Dev.
, vol.14
, pp. 2881-2892
-
-
Crisona, N.J.1
Strick, T.R.2
Bensimon, D.3
Croquette, V.4
Cozzarelli, N.R.5
-
9
-
-
34548348945
-
MukB colocalizes with the oriC region and is required for organization of the two Escherichia coli chromosome arms into separate cell halves
-
Danilova O., Reyes-Lamothe R., Pinskaya M., Sherratt D., Possoz C. MukB colocalizes with the oriC region and is required for organization of the two Escherichia coli chromosome arms into separate cell halves. Mol. Microbiol. 2007, 65:1485-1492.
-
(2007)
Mol. Microbiol.
, vol.65
, pp. 1485-1492
-
-
Danilova, O.1
Reyes-Lamothe, R.2
Pinskaya, M.3
Sherratt, D.4
Possoz, C.5
-
10
-
-
84901197793
-
Beyond DnaA: the role of DNA topology and DNA methylation in bacterial replication initiation
-
Donczew R., Zakrzewska-Czerwińska J., Zawilak-Pawlik A. Beyond DnaA: the role of DNA topology and DNA methylation in bacterial replication initiation. J. Mol. Biol. 2014, 426:2269-2282.
-
(2014)
J. Mol. Biol.
, vol.426
, pp. 2269-2282
-
-
Donczew, R.1
Zakrzewska-Czerwińska, J.2
Zawilak-Pawlik, A.3
-
11
-
-
34249932435
-
Probing transcription factor dynamics at the single-molecule level in a living cell
-
Elf J., Li G.W., Xie X.S. Probing transcription factor dynamics at the single-molecule level in a living cell. Science 2007, 316:1191-1194.
-
(2007)
Science
, vol.316
, pp. 1191-1194
-
-
Elf, J.1
Li, G.W.2
Xie, X.S.3
-
12
-
-
0037249352
-
Temporal regulation of topoisomerase IV activity in E. coli
-
Espeli O., Levine C., Hassing H., Marians K.J. Temporal regulation of topoisomerase IV activity in E. coli. Mol. Cell 2003, 11:189-201.
-
(2003)
Mol. Cell
, vol.11
, pp. 189-201
-
-
Espeli, O.1
Levine, C.2
Hassing, H.3
Marians, K.J.4
-
13
-
-
34948899396
-
Unlinking chromosome catenanes in vivo by site-specific recombination
-
Grainge I., Bregu M., Vazquez M., Sivanathan V., Ip S.C., Sherratt D.J. Unlinking chromosome catenanes in vivo by site-specific recombination. EMBO J. 2007, 26:4228-4238.
-
(2007)
EMBO J.
, vol.26
, pp. 4228-4238
-
-
Grainge, I.1
Bregu, M.2
Vazquez, M.3
Sivanathan, V.4
Ip, S.C.5
Sherratt, D.J.6
-
14
-
-
0029018327
-
Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter
-
Guzman L.M., Belin D., Carson M.J., Beckwith J. Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter. J. Bacteriol. 1995, 177:4121-4130.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 4121-4130
-
-
Guzman, L.M.1
Belin, D.2
Carson, M.J.3
Beckwith, J.4
-
15
-
-
78650495032
-
Physical and functional interaction between the condensin MukB and the decatenase topoisomerase IV in Escherichia coli
-
Hayama R., Marians K.J. Physical and functional interaction between the condensin MukB and the decatenase topoisomerase IV in Escherichia coli. Proc. Natl. Acad. Sci. USA 2010, 107:18826-18831.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 18826-18831
-
-
Hayama, R.1
Marians, K.J.2
-
16
-
-
84875159535
-
The MukB-ParC interaction affects the intramolecular, not intermolecular, activities of topoisomerase IV
-
Hayama R., Bahng S., Karasu M.E., Marians K.J. The MukB-ParC interaction affects the intramolecular, not intermolecular, activities of topoisomerase IV. J. Biol. Chem. 2013, 288:7653-7661.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 7653-7661
-
-
Hayama, R.1
Bahng, S.2
Karasu, M.E.3
Marians, K.J.4
-
17
-
-
33646177549
-
At the heart of the chromosome: SMC proteins in action
-
Hirano T. At the heart of the chromosome: SMC proteins in action. Nat. Rev. Mol. Cell Biol. 2006, 7:311-322.
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 311-322
-
-
Hirano, T.1
-
18
-
-
33745179903
-
Distribution of gyrase and topoisomerase IV on bacterial nucleoid: implications for nucleoid organization
-
Hsu Y.H., Chung M.W., Li T.K. Distribution of gyrase and topoisomerase IV on bacterial nucleoid: implications for nucleoid organization. Nucleic Acids Res. 2006, 34:3128-3138.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 3128-3138
-
-
Hsu, Y.H.1
Chung, M.W.2
Li, T.K.3
-
19
-
-
84884621139
-
Regulation of sister chromosome cohesion by the replication fork tracking protein SeqA
-
Joshi M.C., Magnan D., Montminy T.P., Lies M., Stepankiw N., Bates D. Regulation of sister chromosome cohesion by the replication fork tracking protein SeqA. PLoS Genet. 2013, 9:e1003673.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003673
-
-
Joshi, M.C.1
Magnan, D.2
Montminy, T.P.3
Lies, M.4
Stepankiw, N.5
Bates, D.6
-
20
-
-
0032538454
-
The mechanism of inhibition of topoisomerase IV by quinolone antibacterials
-
Khodursky A.B., Cozzarelli N.R. The mechanism of inhibition of topoisomerase IV by quinolone antibacterials. J. Biol. Chem. 1998, 273:27668-27677.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 27668-27677
-
-
Khodursky, A.B.1
Cozzarelli, N.R.2
-
22
-
-
0034662998
-
Analysis of topoisomerase function in bacterial replication fork movement: use of DNA microarrays
-
Khodursky A.B., Peter B.J., Schmid M.B., DeRisi J., Botstein D., Brown P.O., Cozzarelli N.R. Analysis of topoisomerase function in bacterial replication fork movement: use of DNA microarrays. Proc. Natl. Acad. Sci. USA 2000, 97:9419-9424.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 9419-9424
-
-
Khodursky, A.B.1
Peter, B.J.2
Schmid, M.B.3
DeRisi, J.4
Botstein, D.5
Brown, P.O.6
Cozzarelli, N.R.7
-
23
-
-
77955629227
-
Cellular strategies for regulating DNA supercoiling: a single-molecule perspective
-
Koster D.A., Crut A., Shuman S., Bjornsti M.A., Dekker N.H. Cellular strategies for regulating DNA supercoiling: a single-molecule perspective. Cell 2010, 142:519-530.
-
(2010)
Cell
, vol.142
, pp. 519-530
-
-
Koster, D.A.1
Crut, A.2
Shuman, S.3
Bjornsti, M.A.4
Dekker, N.H.5
-
24
-
-
84878593676
-
The role of DNA bending in type IIA topoisomerase function
-
Lee I., Dong K.C., Berger J.M. The role of DNA bending in type IIA topoisomerase function. Nucleic Acids Res. 2013, 41:5444-5456.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 5444-5456
-
-
Lee, I.1
Dong, K.C.2
Berger, J.M.3
-
25
-
-
78650438598
-
Escherichia coli condensin MukB stimulates topoisomerase IV activity by a direct physical interaction
-
Li Y., Stewart N.K., Berger A.J., Vos S., Schoeffler A.J., Berger J.M., Chait B.T., Oakley M.G. Escherichia coli condensin MukB stimulates topoisomerase IV activity by a direct physical interaction. Proc. Natl. Acad. Sci. USA 2010, 107:18832-18837.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 18832-18837
-
-
Li, Y.1
Stewart, N.K.2
Berger, A.J.3
Vos, S.4
Schoeffler, A.J.5
Berger, J.M.6
Chait, B.T.7
Oakley, M.G.8
-
26
-
-
38749148048
-
High-density mapping of single-molecule trajectories with photoactivated localization microscopy
-
Manley S., Gillette J.M., Patterson G.H., Shroff H., Hess H.F., Betzig E., Lippincott-Schwartz J. High-density mapping of single-molecule trajectories with photoactivated localization microscopy. Nat. Methods 2008, 5:155-157.
-
(2008)
Nat. Methods
, vol.5
, pp. 155-157
-
-
Manley, S.1
Gillette, J.M.2
Patterson, G.H.3
Shroff, H.4
Hess, H.F.5
Betzig, E.6
Lippincott-Schwartz, J.7
-
27
-
-
84937019395
-
Slow unloading leads to DNA-bound β2-sliding clamp accumulation in live Escherichia coli cells
-
Moolman M.C., Krishnan S.T., Kerssemakers J.W., van den Berg A., Tulinski P., Depken M., Reyes-Lamothe R., Sherratt D.J., Dekker N.H. Slow unloading leads to DNA-bound β2-sliding clamp accumulation in live Escherichia coli cells. Nat. Commun. 2014, 5:5820.
-
(2014)
Nat. Commun.
, vol.5
, pp. 5820
-
-
Moolman, M.C.1
Krishnan, S.T.2
Kerssemakers, J.W.3
van den Berg, A.4
Tulinski, P.5
Depken, M.6
Reyes-Lamothe, R.7
Sherratt, D.J.8
Dekker, N.H.9
-
28
-
-
66349135629
-
Mechanisms of chiral discrimination by topoisomerase IV
-
Neuman K.C., Charvin G., Bensimon D., Croquette V. Mechanisms of chiral discrimination by topoisomerase IV. Proc. Natl. Acad. Sci. USA 2009, 106:6986-6991.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 6986-6991
-
-
Neuman, K.C.1
Charvin, G.2
Bensimon, D.3
Croquette, V.4
-
29
-
-
84903367765
-
The SMC complex MukBEF recruits topoisomerase IV to the origin of replication region in live Escherichia coli
-
Nicolas E., Upton A.L., Uphoff S., Henry O., Badrinarayanan A., Sherratt D. The SMC complex MukBEF recruits topoisomerase IV to the origin of replication region in live Escherichia coli. MBio 2014, 5:e01001-e01013.
-
(2014)
MBio
, vol.5
, pp. e01001-e01013
-
-
Nicolas, E.1
Upton, A.L.2
Uphoff, S.3
Henry, O.4
Badrinarayanan, A.5
Sherratt, D.6
-
30
-
-
84899902780
-
The bacterial chromosome: architecture and action of bacterial SMC and SMC-like complexes
-
Nolivos S., Sherratt D. The bacterial chromosome: architecture and action of bacterial SMC and SMC-like complexes. FEMS Microbiol. Rev. 2014, 38:380-392.
-
(2014)
FEMS Microbiol. Rev.
, vol.38
, pp. 380-392
-
-
Nolivos, S.1
Sherratt, D.2
-
31
-
-
84874642927
-
Extracting intracellular diffusive states and transition rates from single-molecule tracking data
-
Persson F., Lindén M., Unoson C., Elf J. Extracting intracellular diffusive states and transition rates from single-molecule tracking data. Nat. Methods 2013, 10:265-269.
-
(2013)
Nat. Methods
, vol.10
, pp. 265-269
-
-
Persson, F.1
Lindén, M.2
Unoson, C.3
Elf, J.4
-
32
-
-
0035902590
-
Topological challenges to DNA replication: conformations at the fork
-
Postow L., Crisona N.J., Peter B.J., Hardy C.D., Cozzarelli N.R. Topological challenges to DNA replication: conformations at the fork. Proc. Natl. Acad. Sci. USA 2001, 98:8219-8226.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 8219-8226
-
-
Postow, L.1
Crisona, N.J.2
Peter, B.J.3
Hardy, C.D.4
Cozzarelli, N.R.5
-
33
-
-
77951537332
-
Stoichiometry and architecture of active DNA replication machinery in Escherichia coli
-
Reyes-Lamothe R., Sherratt D.J., Leake M.C. Stoichiometry and architecture of active DNA replication machinery in Escherichia coli. Science 2010, 328:498-501.
-
(2010)
Science
, vol.328
, pp. 498-501
-
-
Reyes-Lamothe, R.1
Sherratt, D.J.2
Leake, M.C.3
-
34
-
-
0041306000
-
Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases
-
Stone M.D., Bryant Z., Crisona N.J., Smith S.B., Vologodskii A., Bustamante C., Cozzarelli N.R. Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases. Proc. Natl. Acad. Sci. USA 2003, 100:8654-8659.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 8654-8659
-
-
Stone, M.D.1
Bryant, Z.2
Crisona, N.J.3
Smith, S.B.4
Vologodskii, A.5
Bustamante, C.6
Cozzarelli, N.R.7
-
35
-
-
84907853623
-
In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair
-
Stracy M., Uphoff S., Garza de Leon F., Kapanidis A.N. In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair. FEBS Lett. 2014, 588:3585-3594.
-
(2014)
FEBS Lett.
, vol.588
, pp. 3585-3594
-
-
Stracy, M.1
Uphoff, S.2
Garza de Leon, F.3
Kapanidis, A.N.4
-
36
-
-
84938941259
-
Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid
-
Stracy M., Lesterlin C., Garza de Leon F., Uphoff S., Zawadzki P., Kapanidis A.N. Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid. Proc. Natl. Acad. Sci. USA 2015, 112:E4390-E4399.
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. E4390-E4399
-
-
Stracy, M.1
Lesterlin, C.2
Garza de Leon, F.3
Uphoff, S.4
Zawadzki, P.5
Kapanidis, A.N.6
-
37
-
-
84877855691
-
Single-molecule DNA repair in live bacteria
-
Uphoff S., Reyes-Lamothe R., Garza de Leon F., Sherratt D.J., Kapanidis A.N. Single-molecule DNA repair in live bacteria. Proc. Natl. Acad. Sci. USA 2013, 110:8063-8068.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 8063-8068
-
-
Uphoff, S.1
Reyes-Lamothe, R.2
Garza de Leon, F.3
Sherratt, D.J.4
Kapanidis, A.N.5
-
38
-
-
81855198087
-
All tangled up: how cells direct, manage and exploit topoisomerase function
-
Vos S.M., Tretter E.M., Schmidt B.H., Berger J.M. All tangled up: how cells direct, manage and exploit topoisomerase function. Nat. Rev. Mol. Cell Biol. 2011, 12:827-841.
-
(2011)
Nat. Rev. Mol. Cell Biol.
, vol.12
, pp. 827-841
-
-
Vos, S.M.1
Tretter, E.M.2
Schmidt, B.H.3
Berger, J.M.4
-
39
-
-
84881660081
-
Distinct regions of the Escherichia coli ParC C-terminal domain are required for substrate discrimination by topoisomerase IV
-
Vos S.M., Lee I., Berger J.M. Distinct regions of the Escherichia coli ParC C-terminal domain are required for substrate discrimination by topoisomerase IV. J. Mol. Biol. 2013, 425:3029-3045.
-
(2013)
J. Mol. Biol.
, vol.425
, pp. 3029-3045
-
-
Vos, S.M.1
Lee, I.2
Berger, J.M.3
-
40
-
-
84887822437
-
Structural basis for the MukB-topoisomerase IV interaction and its functional implications in vivo
-
Vos S.M., Stewart N.K., Oakley M.G., Berger J.M. Structural basis for the MukB-topoisomerase IV interaction and its functional implications in vivo. EMBO J. 2013, 32:2950-2962.
-
(2013)
EMBO J.
, vol.32
, pp. 2950-2962
-
-
Vos, S.M.1
Stewart, N.K.2
Oakley, M.G.3
Berger, J.M.4
-
41
-
-
51149119105
-
Modulation of Escherichia coli sister chromosome cohesion by topoisomerase IV
-
Wang X., Reyes-Lamothe R., Sherratt D.J. Modulation of Escherichia coli sister chromosome cohesion by topoisomerase IV. Genes Dev. 2008, 22:2426-2433.
-
(2008)
Genes Dev.
, vol.22
, pp. 2426-2433
-
-
Wang, X.1
Reyes-Lamothe, R.2
Sherratt, D.J.3
-
42
-
-
58149152843
-
Structural studies of a bacterial condensin complex reveal ATP-dependent disruption of intersubunit interactions
-
Woo J.S., Lim J.H., Shin H.C., Suh M.K., Ku B., Lee K.H., Joo K., Robinson H., Lee J., Park S.Y., et al. Structural studies of a bacterial condensin complex reveal ATP-dependent disruption of intersubunit interactions. Cell 2009, 136:85-96.
-
(2009)
Cell
, vol.136
, pp. 85-96
-
-
Woo, J.S.1
Lim, J.H.2
Shin, H.C.3
Suh, M.K.4
Ku, B.5
Lee, K.H.6
Joo, K.7
Robinson, H.8
Lee, J.9
Park, S.Y.10
|