-
1
-
-
0004228157
-
-
(American Society for Microbiology, Washington, DC
-
Friedberg EC (2006) DNA Repair and Mutagenesis (American Society for Microbiology, Washington, DC).
-
(2006)
DNA Repair and Mutagenesis
-
-
Friedberg, E.C.1
-
2
-
-
84856233300
-
Balancing repair and tolerance of DNA damage caused by alkylating agents
-
Fu D, Calvo JA, Samson LD (2012) Balancing repair and tolerance of DNA damage caused by alkylating agents. Nat Rev Cancer 12(2):104-120.
-
(2012)
Nat Rev Cancer
, vol.12
, Issue.2
, pp. 104-120
-
-
Fu, D.1
Calvo, J.A.2
Samson, L.D.3
-
3
-
-
84860190046
-
Y265C DNA polymerase beta knockin mice survive past birth and accumulate base excision repair intermediate substrates
-
Senejani AG, et al. (2012) Y265C DNA polymerase beta knockin mice survive past birth and accumulate base excision repair intermediate substrates. Proc Natl Acad Sci USA 109(17):6632-6637.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.17
, pp. 6632-6637
-
-
Senejani, A.G.1
-
5
-
-
0037119587
-
Stochastic gene expression in a single cell
-
DOI 10.1126/science.1070919
-
Elowitz MB, Levine AJ, Siggia ED, Swain PS (2002) Stochastic gene expression in a single cell. Science 297(5584):1183-1186. (Pubitemid 36193353)
-
(2002)
Science
, vol.297
, Issue.5584
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
6
-
-
80052565008
-
Random partitioning of molecules at cell division
-
Huh D, Paulsson J (2011) Random partitioning of molecules at cell division. Proc Natl Acad Sci USA 108(36):15004-15009.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.36
, pp. 15004-15009
-
-
Huh, D.1
Paulsson, J.2
-
7
-
-
0035997344
-
Error-prone repair DNA polymerases in prokaryotes and eukaryotes
-
DOI 10.1146/annurev.biochem.71.083101.124707
-
Goodman MF (2002) Error-prone repair DNA polymerases in prokaryotes and eukaryotes. Annu Rev Biochem 71:17-50. (Pubitemid 34800213)
-
(2002)
Annual Review of Biochemistry
, vol.71
, pp. 17-50
-
-
Goodman, M.F.1
-
8
-
-
0028308290
-
Sites in human nuclei where DNA damaged by ultraviolet light is repaired: Visualization and localization relative to the nucleoskeleton
-
Jackson DA, Balajee AS, Mullenders L, Cook PR (1994) Sites in human nuclei where DNA damaged by ultraviolet light is repaired: Visualization and localization relative to the nucleoskeleton. J Cell Sci 107(Pt 7):1745-1752. (Pubitemid 24226425)
-
(1994)
Journal of Cell Science
, vol.107
, Issue.7
, pp. 1745-1752
-
-
Jackson, D.A.1
Balajee, A.S.2
Mullenders, L.3
Cook, P.R.4
-
9
-
-
22244476422
-
Localization of mitochondrial DNA base excision repair to an inner membrane-associated particulate fraction
-
DOI 10.1093/nar/gki683
-
Stuart JA, Mayard S, Hashiguchi K, Souza-Pinto NC, Bohr VA (2005) Localization of mitochondrial DNA base excision repair to an inner membrane-associated particulate fraction. Nucleic Acids Res 33(12):3722-3732. (Pubitemid 41418541)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.12
, pp. 3722-3732
-
-
Stuart, J.A.1
Mayard, S.2
Hashiguchi, K.3
Souza-Pinto, N.C.4
Bohr, V.A.5
-
10
-
-
0033546210
-
The organization of replication and transcription
-
Cook PR (1999) The organization of replication and transcription. Science 284(5421): 1790-1795.
-
(1999)
Science
, vol.284
, Issue.5421
, pp. 1790-1795
-
-
Cook, P.R.1
-
11
-
-
0015798474
-
Genetic and enzymatic characterization of a conditional lethal mutant of Escherichia coli K12 with a temperature-sensitive DNA ligase
-
Konrad EB, Modrich P, Lehman IR (1973) Genetic and enzymatic characterization of a conditional lethal mutant of Escherichia coli K12 with a temperature-sensitive DNA ligase. J Mol Biol 77(4):519-529.
-
(1973)
J Mol Biol
, vol.77
, Issue.4
, pp. 519-529
-
-
Konrad, E.B.1
Modrich, P.2
Lehman, I.R.3
-
12
-
-
0017161630
-
Methyl methane sulfonate-sensitive mutant of Escherichia coli deficient in an endonuclease specific for apurinic sites in deoxyribonucleic acid
-
Ljungquist S, Lindahl T, Howard-Flanders P (1976) Methyl methane sulfonate-sensitive mutant of Escherichia coli deficient in an endonuclease specific for apurinic sites in deoxyribonucleic acid. J Bacteriol 126(2):646-653.
-
(1976)
J Bacteriol
, vol.126
, Issue.2
, pp. 646-653
-
-
Ljungquist, S.1
Lindahl, T.2
Howard-Flanders, P.3
-
13
-
-
0032544037
-
Generation of a strong mutator phenotype in yeast by imbalanced base excision repair
-
DOI 10.1073/pnas.95.17.9997
-
Glassner BJ, Rasmussen LJ, Najarian MT, Posnick LM, Samson LD (1998) Generation of a strong mutator phenotype in yeast by imbalanced base excision repair. Proc Natl Acad Sci USA 95(17):9997-10002. (Pubitemid 28415283)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.17
, pp. 9997-10002
-
-
Glassner, B.J.1
Rasmussen, L.J.2
Najarian, M.T.3
Posnick, L.M.4
Samson, L.D.5
-
14
-
-
34447271714
-
Simulating the temporal modulation of inducible DNA damage response in Escherichia coli
-
DOI 10.1529/biophysj.106.090712
-
Ni M, Wang S-Y, Li J-K, Ouyang Q (2007) Simulating the temporal modulation of inducible DNA damage response in Escherichia coli. Biophys J 93(1):62-73. (Pubitemid 47041652)
-
(2007)
Biophysical Journal
, vol.93
, Issue.1
, pp. 62-73
-
-
Ni, M.1
Wang, S.-Y.2
Li, J.-K.3
Ouyang, Q.4
-
15
-
-
79951828759
-
A matter of life or death: Modeling DNA damage and repair in bacteria
-
Karschau J, et al. (2011) A matter of life or death: Modeling DNA damage and repair in bacteria. Biophys J 100(4):814-821.
-
(2011)
Biophys J
, vol.100
, Issue.4
, pp. 814-821
-
-
Karschau, J.1
-
16
-
-
0742305875
-
Repairing DNA-methylation damage
-
DOI 10.1038/nrm1312
-
Sedgwick B (2004) Repairing DNA-methylation damage. Nat Rev Mol Cell Biol 5(2): 148-157. (Pubitemid 38160257)
-
(2004)
Nature Reviews Molecular Cell Biology
, vol.5
, Issue.2
, pp. 148-157
-
-
Sedgwick, B.1
-
17
-
-
0003890119
-
-
University Science Books, Herndon, VA
-
Kornberg A (2005) DNA Replication (University Science Books, Herndon, VA).
-
(2005)
DNA Replication
-
-
Kornberg, A.1
-
18
-
-
50049123242
-
Tools to study DNA repair: What's in the box?
-
Feuerhahn S, Egly J-M (2008) Tools to study DNA repair: What's in the box? Trends Genet 24(9):467-474.
-
(2008)
Trends Genet
, vol.24
, Issue.9
, pp. 467-474
-
-
Feuerhahn, S.1
Egly, J.-M.2
-
19
-
-
0033532342
-
Action of DNA repair endonuclease ERCC1/XPF in living cells
-
DOI 10.1126/science.284.5416.958
-
Houtsmuller AB, et al. (1999) Action of DNA repair endonuclease ERCC1/XPF in living cells. Science 284(5416):958-961. (Pubitemid 29288433)
-
(1999)
Science
, vol.284
, Issue.5416
, pp. 958-961
-
-
Houtsmuller, A.B.1
Rademakers, S.2
Nigg, A.L.3
Hoogstraten, D.4
Hoeijmakers, J.H.J.5
Vermeulen, W.6
-
20
-
-
24044449257
-
Mathematical modeling of nucleotide excision repair reveals efficiency of sequential assembly strategies
-
DOI 10.1016/j.molcel.2005.06.036, PII S109727650501511X
-
Politi A, et al. (2005) Mathematical modeling of nucleotide excision repair reveals efficiency of sequential assembly strategies. Mol Cell 19(5):679-690. (Pubitemid 41219443)
-
(2005)
Molecular Cell
, vol.19
, Issue.5
, pp. 679-690
-
-
Politi, A.1
Mone, M.J.2
Houtsmuller, A.B.3
Hoogstraten, D.4
Vermeulen, W.5
Heinrich, R.6
Van Driel, R.7
-
21
-
-
34249932435
-
Probing transcription factor dynamics at the single-molecule level in a living cell
-
DOI 10.1126/science.1141967
-
Elf J, Li G-W, Xie XS (2007) Probing transcription factor dynamics at the single-molecule level in a living cell. Science 316(5828):1191-1194. (Pubitemid 46877481)
-
(2007)
Science
, vol.316
, Issue.5828
, pp. 1191-1194
-
-
Elf, J.1
Li, G.-W.2
Xie, X.S.3
-
22
-
-
77951537332
-
Stoichiometry and architecture of active DNA replication machinery in Escherichia coli
-
Reyes-Lamothe R, Sherratt DJ, Leake MC (2010) Stoichiometry and architecture of active DNA replication machinery in Escherichia coli. Science 328(5977):498-501.
-
(2010)
Science
, vol.328
, Issue.5977
, pp. 498-501
-
-
Reyes-Lamothe, R.1
Sherratt, D.J.2
Leake, M.C.3
-
23
-
-
33747179417
-
Imaging intracellular fluorescent proteins at nanometer resolution
-
DOI 10.1126/science.1127344
-
Betzig E, et al. (2006) Imaging intracellular fluorescent proteins at nanometer resolution. Science 313(5793):1642-1645. (Pubitemid 44414039)
-
(2006)
Science
, vol.313
, Issue.5793
, pp. 1642-1645
-
-
Betzig, E.1
Patterson, G.H.2
Sougrat, R.3
Lindwasser, O.W.4
Olenych, S.5
Bonifacino, J.S.6
Davidson, M.W.7
Lippincott-Schwartz, J.8
Hess, H.F.9
-
24
-
-
56149118370
-
Super-resolution imaging in live Caulobacter crescentus cells using photoswitchable EYFP
-
Biteen JS, et al. (2008) Super-resolution imaging in live Caulobacter crescentus cells using photoswitchable EYFP. Nat Methods 5(11):947-949.
-
(2008)
Nat Methods
, vol.5
, Issue.11
, pp. 947-949
-
-
Biteen, J.S.1
-
25
-
-
67650762824
-
Super-resolution fluorescence microscopy
-
Huang B, Bates M, Zhuang X (2009) Super-resolution fluorescence microscopy. Annu Rev Biochem 78:993-1016.
-
(2009)
Annu Rev Biochem
, vol.78
, pp. 993-1016
-
-
Huang, B.1
Bates, M.2
Zhuang, X.3
-
26
-
-
38749148048
-
High-density mapping of single-molecule trajectories with photoactivated localization microscopy
-
DOI 10.1038/nmeth.1176, PII NMETH.1176
-
Manley S, et al. (2008) High-density mapping of single-molecule trajectories with photoactivated localization microscopy. Nat Methods 5(2):155-157. (Pubitemid 351181741)
-
(2008)
Nature Methods
, vol.5
, Issue.2
, pp. 155-157
-
-
Manley, S.1
Gillette, J.M.2
Patterson, G.H.3
Shroff, H.4
Hess, H.F.5
Betzig, E.6
Lippincott-Schwartz, J.7
-
27
-
-
50349088658
-
Investigating intracellular dynamics of FtsZ cytoskeleton with photoactivation single-molecule tracking
-
Niu L, Yu J (2008) Investigating intracellular dynamics of FtsZ cytoskeleton with photoactivation single-molecule tracking. Biophys J 95(4):2009-2016.
-
(2008)
Biophys J
, vol.95
, Issue.4
, pp. 2009-2016
-
-
Niu, L.1
Yu, J.2
-
28
-
-
79961224232
-
Single-molecule investigations of the stringent response machinery in living bacterial cells
-
English BP, et al. (2011) Single-molecule investigations of the stringent response machinery in living bacterial cells. Proc Natl Acad Sci USA 108(31):E365-E373.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.31
-
-
English, B.P.1
-
29
-
-
59349110743
-
Photoactivatable mCherry for high-resolution two-color fluorescence microscopy
-
Subach FV, et al. (2009) Photoactivatable mCherry for high-resolution two-color fluorescence microscopy. Nat Methods 6(2):153-159.
-
(2009)
Nat Methods
, vol.6
, Issue.2
, pp. 153-159
-
-
Subach, F.V.1
-
31
-
-
0026620949
-
Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli
-
Ball CA, Osuna R, Ferguson KC, Johnson RC (1992) Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli. J Bacteriol 174(24):8043-8056. (Pubitemid 23002939)
-
(1992)
Journal of Bacteriology
, vol.174
, Issue.24
, pp. 8043-8056
-
-
Ball, C.A.1
Osuna, R.2
Ferguson, K.C.3
Johnson, R.C.4
-
32
-
-
24744445788
-
Single-particle tracking of oriC-GFP fluorescent spots during chromosome segregation in Escherichia coli
-
DOI 10.1016/j.jsb.2005.06.004, PII S1047847705001243
-
Elmore S, Müller M, Vischer N, Odijk T, Woldringh CL (2005) Single-particle tracking of oriC-GFP fluorescent spots during chromosome segregation in Escherichia coli. J Struct Biol 151(3):275-287. (Pubitemid 41338734)
-
(2005)
Journal of Structural Biology
, vol.151
, Issue.3
, pp. 275-287
-
-
Elmore, S.1
Muller, M.2
Vischer, N.3
Odijk, T.4
Woldringh, C.L.5
-
33
-
-
84862835148
-
Optimal diffusion coefficient estimation in singleparticle tracking
-
Michalet X, Berglund AJ (2012) Optimal diffusion coefficient estimation in singleparticle tracking. Phys Rev E Stat Nonlin Soft Matter Phys 85(6 Pt 1):061916.
-
(2012)
Phys Rev E Stat Nonlin Soft Matter Phys
, vol.85
, Issue.6 PART 1
, pp. 061916
-
-
Michalet, X.1
Berglund, A.J.2
-
34
-
-
33645807371
-
A base-excision DNArepair protein finds intrahelical lesion bases by fast sliding in contact with DNA
-
Blainey PC, van Oijen AM, Banerjee A, Verdine GL, Xie XS (2006) A base-excision DNArepair protein finds intrahelical lesion bases by fast sliding in contact with DNA. Proc Natl Acad Sci USA 103(15):5752-5757.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.15
, pp. 5752-5757
-
-
Blainey, P.C.1
Van Oijen, A.M.2
Banerjee, A.3
Verdine, G.L.4
Xie, X.S.5
-
35
-
-
84868514786
-
Single-molecule imaging reveals target-search mechanisms during DNA mismatch repair
-
Gorman J, et al. (2012) Single-molecule imaging reveals target-search mechanisms during DNA mismatch repair. Proc Natl Acad Sci USA 109(45):E3074-E3083.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.45
-
-
Gorman, J.1
-
36
-
-
73949097615
-
Single molecule measurement of the "speed limit" of DNA polymerase
-
Schwartz JJ, Quake SR (2009) Single molecule measurement of the "speed limit" of DNA polymerase. Proc Natl Acad Sci USA 106(48):20294-20299.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.48
, pp. 20294-20299
-
-
Schwartz, J.J.1
Quake, S.R.2
-
37
-
-
84870552801
-
Single-molecule microscopy reveals new insights into nucleotide selection by DNA polymerase I
-
Markiewicz RP, Vrtis KB, Rueda D, Romano LJ (2012) Single-molecule microscopy reveals new insights into nucleotide selection by DNA polymerase I. Nucleic Acids Res 40 (16):7975-7984.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.16
, pp. 7975-7984
-
-
Markiewicz, R.P.1
Vrtis, K.B.2
Rueda, D.3
Romano, L.J.4
-
38
-
-
0015857933
-
Deoxyribonucleic acid ligase. A steady state kinetic analysis of the reaction catalyzed by the enzyme from Escherichia coli
-
Modorich P, Lehman IR (1973) Deoxyribonucleic acid ligase. A steady state kinetic analysis of the reaction catalyzed by the enzyme from Escherichia coli. J Biol Chem 248(21):7502-7511.
-
(1973)
J Biol Chem
, vol.248
, Issue.21
, pp. 7502-7511
-
-
Modorich, P.1
Lehman, I.R.2
-
39
-
-
0031829701
-
A broadening view of recombinational DNA repair in bacteria
-
DOI 10.1046/j.1365-2443.1998.00175.x
-
Cox MM (1998) A broadening view of recombinational DNA repair in bacteria. Genes Cells 3(2):65-78. (Pubitemid 28383636)
-
(1998)
Genes to Cells
, vol.3
, Issue.2
, pp. 65-78
-
-
Cox, M.M.1
-
40
-
-
0037472087
-
Escherichia coli uracil- and ethenocytosine-initiated base excision DNA repair: Rate-limiting step and patch size distribution
-
DOI 10.1021/bi027115v
-
Sung J-S, Mosbaugh DW (2003) Escherichia coli uracil-and ethenocytosine-initiated base excision DNA repair: Rate-limiting step and patch size distribution. Biochemistry 42(16):4613-4625. (Pubitemid 36506016)
-
(2003)
Biochemistry
, vol.42
, Issue.16
, pp. 4613-4625
-
-
Sung, J.-S.1
Mosbaugh, D.W.2
-
41
-
-
33847234664
-
Detection of labeled abasic sites in damaged DNA by capillary electrophoresis with laser-induced fluorescence
-
Fundador E, Rusling J (2007) Detection of labeled abasic sites in damaged DNA by capillary electrophoresis with laser-induced fluorescence. Anal Bioanal Chem 387(5):1883-1890.
-
(2007)
Anal Bioanal Chem
, vol.387
, Issue.5
, pp. 1883-1890
-
-
Fundador, E.1
Rusling, J.2
-
42
-
-
0019523731
-
Effect of methyl methanesulfonate on the nucleoid structure of Escherichia coli
-
Lossius I, Krüger PG, Kleppe K (1980) Effect of methyl methanesulfonate on the nucleoid structure of Escherichia coli. J Gen Microbiol 124:159-171.
-
(1980)
J Gen Microbiol
, vol.124
, pp. 159-171
-
-
Lossius, I.1
Krüger, P.G.2
Kleppe, K.3
-
43
-
-
77956553257
-
Competition of Escherichia coli DNA polymerases I, II and III with DNA Pol IV in stressed cells
-
Hastings PJ, et al. (2010) Competition of Escherichia coli DNA polymerases I, II and III with DNA Pol IV in stressed cells. PLoS ONE 5(5):e10862.
-
(2010)
PLoS ONE
, vol.5
, Issue.5
-
-
Hastings, P.J.1
-
44
-
-
0034612347
-
Ordered intracellular RecA-DNA assemblies: A potential site of in vivo RecA-mediated activities
-
DOI 10.1073/pnas.090532397
-
Levin-Zaidman S, et al. (2000) Ordered intracellular RecA-DNA assemblies: A potential site of in vivo RecA-mediated activities. Proc Natl Acad Sci USA 97(12):6791-6796. (Pubitemid 30412793)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.12
, pp. 6791-6796
-
-
Levin-Zaidman, S.1
Frenkiel-Krispin, D.2
Shimoni, E.3
Sabanay, I.4
Wolf, S.G.5
Minsky, A.6
-
45
-
-
3042579602
-
How do site-specific DNA-binding proteins find their targets?
-
DOI 10.1093/nar/gkh624
-
Halford SE, Marko JF (2004) How do site-specific DNA-binding proteins find their targets? Nucleic Acids Res 32(10):3040-3052. (Pubitemid 39022995)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.10
, pp. 3040-3052
-
-
Halford, S.E.1
Marko, J.F.2
-
46
-
-
84867760568
-
In vivo architecture and action of bacterial structural maintenance of chromosome proteins
-
Badrinarayanan A, Reyes-Lamothe R, Uphoff S, Leake MC, Sherratt DJ (2012) In vivo architecture and action of bacterial structural maintenance of chromosome proteins. Science 338(6106):528-531.
-
(2012)
Science
, vol.338
, Issue.6106
, pp. 528-531
-
-
Badrinarayanan, A.1
Reyes-Lamothe, R.2
Uphoff, S.3
Leake, M.C.4
Sherratt, D.J.5
|