메뉴 건너뛰기




Volumn 45, Issue 1, 2016, Pages 63-70

Investigation of the free energy profiles of amantadine and rimantadine in the AM2 binding pocket

Author keywords

AM2 virus; Amantadine; M2 pocket; Pathway docking; Rimantadine

Indexed keywords

AMANTADINE; RIMANTADINE; TRANSIENT RECEPTOR POTENTIAL CHANNEL M2; M2 PROTEIN, INFLUENZA A VIRUS; MATRIX PROTEIN; PROTEIN BINDING;

EID: 84952864894     PISSN: 01757571     EISSN: 14321017     Source Type: Journal    
DOI: 10.1007/s00249-015-1077-y     Document Type: Article
Times cited : (8)

References (41)
  • 2
    • 40349105892 scopus 로고    scopus 로고
    • Amantadine-induced conformational and dynamical changes of the influenza M2 transmembrane proton channel
    • PID: 18230730
    • Cady SD, Hong M (2008) Amantadine-induced conformational and dynamical changes of the influenza M2 transmembrane proton channel. Proc Natl Acad Sci USA 105:1483–1488
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 1483-1488
    • Cady, S.D.1    Hong, M.2
  • 3
    • 58149345493 scopus 로고    scopus 로고
    • Structure of amantadine-bound M2 transmembrane peptide of influenza A in lipid bilayers from magic-angle-spinning solid-state NMR: the role of Ser31 in amantadine binding
    • PID: 19061899
    • Cady SD, Mishanina TV, Hong M (2009) Structure of amantadine-bound M2 transmembrane peptide of influenza A in lipid bilayers from magic-angle-spinning solid-state NMR: the role of Ser31 in amantadine binding. J Mol Biol 385:1127–1141
    • (2009) J Mol Biol , vol.385 , pp. 1127-1141
    • Cady, S.D.1    Mishanina, T.V.2    Hong, M.3
  • 4
    • 76249125649 scopus 로고    scopus 로고
    • Structure of the amantadine binding site of influenza M2 proton channels in lipid bilayers
    • PID: 20130653
    • Cady SD, Schmidt-Rohr K, Wang J, Soto CS, DeGrado WF, Hong M (2010) Structure of the amantadine binding site of influenza M2 proton channels in lipid bilayers. Nature 463:689–692
    • (2010) Nature , vol.463 , pp. 689-692
    • Cady, S.D.1    Schmidt-Rohr, K.2    Wang, J.3    Soto, C.S.4    DeGrado, W.F.5    Hong, M.6
  • 7
    • 0022157043 scopus 로고
    • The molecular basis of the specific anti-influenza action of amantadine
    • PID: 4065098
    • Hay AJ, Wolstenholme AJ, Skehel JJ, Smith MH (1985) The molecular basis of the specific anti-influenza action of amantadine. EMBO J 4:3021–3024
    • (1985) EMBO J , vol.4 , pp. 3021-3024
    • Hay, A.J.1    Wolstenholme, A.J.2    Skehel, J.J.3    Smith, M.H.4
  • 8
    • 0025923280 scopus 로고
    • Influenza virus M2 integral membrane protein is a homotetramer stabilized by formation of disulfide bonds
    • Holsinger LJ, Lamb RA (1991) Influenza virus M2 integral membrane protein is a homotetramer stabilized by formation of disulfide bonds. J Virology 183:32–43
    • (1991) J Virology , vol.183 , pp. 32-43
    • Holsinger, L.J.1    Lamb, R.A.2
  • 9
    • 33646494326 scopus 로고    scopus 로고
    • Histidines, heart of the hydrogen ion channel from influenza A virus: toward an understanding of conductance and proton selectivity
    • PID: 16632600
    • Hu J, Fu R, Nishimura K, Zhang L, Zhou H-X, Busath DD, Vijayvergiya V, Cross TA (2006) Histidines, heart of the hydrogen ion channel from influenza A virus: toward an understanding of conductance and proton selectivity. Proc Natl Acad Sci USA 103:6865–6870
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 6865-6870
    • Hu, J.1    Fu, R.2    Nishimura, K.3    Zhang, L.4    Zhou, H.-X.5    Busath, D.D.6    Vijayvergiya, V.7    Cross, T.A.8
  • 10
    • 34250334756 scopus 로고    scopus 로고
    • Backbone structure of the amantadine-blocked Trans-membrane domain M2 proton channel from influenza A virus
    • PID: 17384070
    • Hu J, Asbury T, Achutha S, Li C, Bertram R, Quine JR, Fu R, Cross TA (2007) Backbone structure of the amantadine-blocked Trans-membrane domain M2 proton channel from influenza A virus. Biophys J 92:4335–4343
    • (2007) Biophys J , vol.92 , pp. 4335-4343
    • Hu, J.1    Asbury, T.2    Achutha, S.3    Li, C.4    Bertram, R.5    Quine, J.R.6    Fu, R.7    Cross, T.A.8
  • 13
    • 49449093199 scopus 로고    scopus 로고
    • Functional studies indicate amantadine binds to the pore of the influenza A virus M2 proton-selective ion channel
    • PID: 18669647
    • Jing X, Ma C, Ohigashi Y, Oliveira FA, Jardetzky TS, Pinto LH, Lamb RA (2008) Functional studies indicate amantadine binds to the pore of the influenza A virus M2 proton-selective ion channel. Proc Natl Acad Sci USA 105:10967–10972
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 10967-10972
    • Jing, X.1    Ma, C.2    Ohigashi, Y.3    Oliveira, F.A.4    Jardetzky, T.S.5    Pinto, L.H.6    Lamb, R.A.7
  • 14
    • 0034614541 scopus 로고    scopus 로고
    • Helix tilt of the M2 transmembrane peptide from influenza A virus: an intrinsic property
    • PID: 10623512
    • Kovacs FA, Denny JK, Song Z, Quine JR, Cross TA (2000) Helix tilt of the M2 transmembrane peptide from influenza A virus: an intrinsic property. J Mol Biol 295:117–125
    • (2000) J Mol Biol , vol.295 , pp. 117-125
    • Kovacs, F.A.1    Denny, J.K.2    Song, Z.3    Quine, J.R.4    Cross, T.A.5
  • 16
    • 0021893484 scopus 로고
    • Influenza virus M2 protein is an integral membrane protein expressed on the infected-cell surface
    • PID: 3882238
    • Lamb RA, Zebedee SL, Richardson CD (1985) Influenza virus M2 protein is an integral membrane protein expressed on the infected-cell surface. Cell 40:627–633
    • (1985) Cell , vol.40 , pp. 627-633
    • Lamb, R.A.1    Zebedee, S.L.2    Richardson, C.D.3
  • 17
    • 79961011765 scopus 로고    scopus 로고
    • Study on phylogenetic relationship, variability, and correlated mutations in M2 proteins of influenza virus A
    • PID: 21829678
    • Le L, Leluk J (2011) Study on phylogenetic relationship, variability, and correlated mutations in M2 proteins of influenza virus A. PLoS One 6:e22970. doi:10.1371/journal.pone.0022970
    • (2011) PLoS One , vol.6 , pp. e22970
    • Le, L.1    Leluk, J.2
  • 18
    • 0035085645 scopus 로고    scopus 로고
    • Definitive assignment of proton selectivity and attoampere unitary current to the M2 ion channel protein of influenza virus
    • PID: 11264354
    • Lin TI, Schroeder C (2001) Definitive assignment of proton selectivity and attoampere unitary current to the M2 ion channel protein of influenza virus. J Virology 75:3647–3656
    • (2001) J Virology , vol.75 , pp. 3647-3656
    • Lin, T.I.1    Schroeder, C.2
  • 19
    • 84938957326 scopus 로고    scopus 로고
    • Steered molecular dynamics approach for promising drugs for influenza A virus targeting M2 channel protein
    • Nguyen H, Le L (2015) Steered molecular dynamics approach for promising drugs for influenza A virus targeting M2 channel protein. European Biophys J. doi:10.1007/s00249-015-1047-4
    • (2015) European Biophys J
    • Nguyen, H.1    Le, L.2
  • 20
    • 0037027306 scopus 로고    scopus 로고
    • The closed state of a H+ channel helical bundle combining precise orientational and distance restraints from solid state NMR
    • PID: 12403618
    • Nishimura K, Kim S, Zhang L, Cross TA (2002) The closed state of a H+ channel helical bundle combining precise orientational and distance restraints from solid state NMR. Biochemistry 41:13170–13177
    • (2002) Biochemistry , vol.41 , pp. 13170-13177
    • Nishimura, K.1    Kim, S.2    Zhang, L.3    Cross, T.A.4
  • 21
    • 71449123670 scopus 로고    scopus 로고
    • An amantadine-sensitive chimeric BM2 ion channel of influenza B virus has implications for the mechanism of drug inhibition
    • PID: 19841275
    • Ohigashi Y, Ma C, Jing X, Balannick V, Pinto LH, Lamb RA (2009) An amantadine-sensitive chimeric BM2 ion channel of influenza B virus has implications for the mechanism of drug inhibition. Proc Natl Acad Sci USA 106:18775–18779
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 18775-18779
    • Ohigashi, Y.1    Ma, C.2    Jing, X.3    Balannick, V.4    Pinto, L.H.5    Lamb, R.A.6
  • 22
    • 0035918599 scopus 로고    scopus 로고
    • Protonation of histidine and histidine-tryptophan interaction in the activation of the M2 ion channel from influenza a virus
    • PID: 11352741
    • Okada A, Miura T, Takeuchi H (2001) Protonation of histidine and histidine-tryptophan interaction in the activation of the M2 ion channel from influenza a virus. Biochemistry 40:6053–6060
    • (2001) Biochemistry , vol.40 , pp. 6053-6060
    • Okada, A.1    Miura, T.2    Takeuchi, H.3
  • 23
    • 77954982338 scopus 로고    scopus 로고
    • Flu channel drug resistance: a tale of two sites
    • PID: 21203971
    • Pielak RM, Chou JJ (2010) Flu channel drug resistance: a tale of two sites. Protein Cell 1:246–258
    • (2010) Protein Cell , vol.1 , pp. 246-258
    • Pielak, R.M.1    Chou, J.J.2
  • 24
    • 0026612385 scopus 로고
    • Influenza virus M2 protein has ion channel activity
    • PID: 1374685
    • Pinto LH, Holsinger LJ, Lamb RA (1992) Influenza virus M2 protein has ion channel activity. Cell 69:517–528
    • (1992) Cell , vol.69 , pp. 517-528
    • Pinto, L.H.1    Holsinger, L.J.2    Lamb, R.A.3
  • 25
    • 0027339698 scopus 로고
    • Influenza virus M2 protein: a molecular modeling study of the ion channel
    • PID: 7679490
    • Sansom MS, Kerr ID (1993) Influenza virus M2 protein: a molecular modeling study of the ion channel. Protein Eng 6:65–74
    • (1993) Protein Eng , vol.6 , pp. 65-74
    • Sansom, M.S.1    Kerr, I.D.2
  • 26
    • 38749106195 scopus 로고    scopus 로고
    • Structure and mechanism of the M2 proton channel of influenza A virus
    • PID: 18235503
    • Schnell JR, Chou JJ (2008) Structure and mechanism of the M2 proton channel of influenza A virus. Nature 451:591–595
    • (2008) Nature , vol.451 , pp. 591-595
    • Schnell, J.R.1    Chou, J.J.2
  • 27
    • 77958156306 scopus 로고    scopus 로고
    • Insight into the mechanism of the influenza A proton channel from a structure in a lipid bilayer
    • PID: 20966252
    • Sharma M, Yi M, Dong H, Qin H, Peterson E, Busath DD, Zhou H-X, Cross TA (2010) Insight into the mechanism of the influenza A proton channel from a structure in a lipid bilayer. Science 330:509–512
    • (2010) Science , vol.330 , pp. 509-512
    • Sharma, M.1    Yi, M.2    Dong, H.3    Qin, H.4    Peterson, E.5    Busath, D.D.6    Zhou, H.-X.7    Cross, T.A.8
  • 28
    • 0034894108 scopus 로고    scopus 로고
    • Influenza: vaccination and treatment
    • PID: 11491177
    • Stephenson I, Nicholson KG (2001) Influenza: vaccination and treatment. Eur Respir J 17:1282–1293
    • (2001) Eur Respir J , vol.17 , pp. 1282-1293
    • Stephenson, I.1    Nicholson, K.G.2
  • 30
    • 0026008031 scopus 로고
    • Structural characteristics of the M2 protein of influenza A viruses: evidence that it forms a tetrameric channel
    • Sugrue RJ, Hay AJ (1991) Structural characteristics of the M2 protein of influenza A viruses: evidence that it forms a tetrameric channel. J Virology 180:617–624
    • (1991) J Virology , vol.180 , pp. 617-624
    • Sugrue, R.J.1    Hay, A.J.2
  • 31
    • 0036007087 scopus 로고    scopus 로고
    • Influenza a virus M2 ion channel activity is essential for efficient replication in tissue culture
    • PID: 11773413
    • Takeda M, Pekosz A, Shuck K, Pinto LH, Lamb RA (2002) Influenza a virus M2 ion channel activity is essential for efficient replication in tissue culture. J Virology 76:1391–1399
    • (2002) J Virology , vol.76 , pp. 1391-1399
    • Takeda, M.1    Pekosz, A.2    Shuck, K.3    Pinto, L.H.4    Lamb, R.A.5
  • 32
    • 0037131381 scopus 로고    scopus 로고
    • The gate of the influenza virus M2 proton channel is formed by a single tryptophan residue
    • PID: 12183461
    • Tang Y, Zaitseva F, Lamb RA, Pinto LH (2002) The gate of the influenza virus M2 proton channel is formed by a single tryptophan residue. J Biol Chem 277:39880–39886
    • (2002) J Biol Chem , vol.277 , pp. 39880-39886
    • Tang, Y.1    Zaitseva, F.2    Lamb, R.A.3    Pinto, L.H.4
  • 33
    • 0142210121 scopus 로고    scopus 로고
    • Initial structural and dynamic characterization of the M2 protein transmembrane and amphipathic helices in lipid bilayers
    • PID: 14573870
    • Tian C, Gao PF, Pinto LH, Lamb RA, Cross TA (2003) Initial structural and dynamic characterization of the M2 protein transmembrane and amphipathic helices in lipid bilayers. Protein Sci 12:2597–2605
    • (2003) Protein Sci , vol.12 , pp. 2597-2605
    • Tian, C.1    Gao, P.F.2    Pinto, L.H.3    Lamb, R.A.4    Cross, T.A.5
  • 34
    • 84904434889 scopus 로고    scopus 로고
    • Recent progress and challenges in the computer-aided design of inhibitors for influenza A M2 channel proteins
    • Tran L, Le L (2014) Recent progress and challenges in the computer-aided design of inhibitors for influenza A M2 channel proteins. Med Chem Res. doi:10.1007/s00044-014-0964-6
    • (2014) Med Chem Res
    • Tran, L.1    Le, L.2
  • 35
    • 84555189814 scopus 로고    scopus 로고
    • Discovery of potential M2 channel inhibitors based on the amantadine scaffold via virtual screening and pharmacophore modeling
    • PID: 22158591
    • Tran L, Choi SB, Al-Naiiar BO, Yusuf M, Wahab HA, Le L (2011) Discovery of potential M2 channel inhibitors based on the amantadine scaffold via virtual screening and pharmacophore modeling. Molecules 16:10227–10255
    • (2011) Molecules , vol.16 , pp. 10227-10255
    • Tran, L.1    Choi, S.B.2    Al-Naiiar, B.O.3    Yusuf, M.4    Wahab, H.A.5    Le, L.6
  • 36
    • 84886100818 scopus 로고    scopus 로고
    • Strategy in structure-based drugs design for influenza A virus targeting M2 channel proteins
    • Tran N, Tran L, Le L (2013) Strategy in structure-based drugs design for influenza A virus targeting M2 channel proteins. Med Chem Res 12:6078–6088
    • (2013) Med Chem Res , vol.12 , pp. 6078-6088
    • Tran, N.1    Tran, L.2    Le, L.3
  • 37
    • 76149120388 scopus 로고    scopus 로고
    • AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
    • PID: 19499576
    • Trott O, Olson AJ (2010) AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J Comput Chem 31:455–461
    • (2010) J Comput Chem , vol.31 , pp. 455-461
    • Trott, O.1    Olson, A.J.2
  • 38
    • 20444385829 scopus 로고    scopus 로고
    • Chemical rescue of histidine selectivity filter mutants of the M2 ion channel of influenza A virus
    • PID: 15784624
    • Venkataraman P, Lamb RA, Pinto LH (2005) Chemical rescue of histidine selectivity filter mutants of the M2 ion channel of influenza A virus. J Biol Chem 280:21463–21472
    • (2005) J Biol Chem , vol.280 , pp. 21463-21472
    • Venkataraman, P.1    Lamb, R.A.2    Pinto, L.H.3
  • 39
    • 0027185716 scopus 로고
    • Ion channel activity of influenza A virus M2 protein: characterization of the amantadine block
    • PID: 7688826
    • Wang C, Takeuchi K, Pinto LH, Lamb RA (1993) Ion channel activity of influenza A virus M2 protein: characterization of the amantadine block. J Virology 67:5585–5594
    • (1993) J Virology , vol.67 , pp. 5585-5594
    • Wang, C.1    Takeuchi, K.2    Pinto, L.H.3    Lamb, R.A.4
  • 40
    • 0028980598 scopus 로고
    • Activation of the M2 ion channel of influenza virus: a role for the transmembrane domain histidine residue
    • PID: 8534806
    • Wang C, Lamb RA, Pinto LH (1995) Activation of the M2 ion channel of influenza virus: a role for the transmembrane domain histidine residue. Biophys J 69:1363–1371
    • (1995) Biophys J , vol.69 , pp. 1363-1371
    • Wang, C.1    Lamb, R.A.2    Pinto, L.H.3
  • 41
    • 49149107480 scopus 로고    scopus 로고
    • A secondary gate as a mechanism for inhibition of the M2 proton channel by amantadine
    • PID: 18476738
    • Yi M, Cross TA, Zhou H-X (2008) A secondary gate as a mechanism for inhibition of the M2 proton channel by amantadine. J Phys Chem B 112:7977–7979
    • (2008) J Phys Chem B , vol.112 , pp. 7977-7979
    • Yi, M.1    Cross, T.A.2    Zhou, H.-X.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.