Evaluation of bacterial contamination in raw milk, ultra-high temperature milk and infant formula using single molecule, real-time sequencing technology

Journal of Dairy Science

Volumn 98, Issue 12, 2015, Pages 8464-8472

  Hou, Qiangchuan ^a   Xu, Haiyan ^a   Zheng, Yi ^a   Xi, Xiaoxia ^a   Kwok, Lai Yu ^a   Sun, Zhihong ^a   Zhang, Heping ^a   Zhang, Wenyi ^a  

^a INNER MONGOLIA AGRICULTURAL UNIVERSITY   (China)

Author keywords

Bacterial contamination; Dairy products; Realtime sequencing technology sequencing; Single molecule

Indexed keywords

RNA 16S;

ANIMAL; ARTIFICIAL MILK; BACILLUS CEREUS; BACTERIAL GENE; BACTERIUM; CLASSIFICATION; ENTEROCOCCUS; GENETICS; HEAT; HUMAN; INFANT; MICROBIOLOGY; MILK;

ANIMALS; BACILLUS CEREUS; BACTERIA; ENTEROCOCCUS; GENES, BACTERIAL; HOT TEMPERATURE; HUMANS; INFANT; INFANT FORMULA; MILK; RNA, RIBOSOMAL, 16S;

EID: 84951764136     PISSN: 00220302     EISSN: 15253198     Source Type: Journal    
DOI: 10.3168/jds.2015-9886     Document Type: Article

References (31)

1. Abd, A. A. H., N. I. AbdulA'Al, and A. S. Abood. 2014. Prevalence of thermophiles and mesophiles in raw and UHT milk. Int. J. Anim. Vet. Adv. 6:24-27
2. Ahmed, M. M. M., E. E. Hafez, M. M. Hassan, H. A. Abdelrrassoul, and Y. M. Mabrouk. 2014. Detection of infant formula contamination by microorganisms. World Appl. Sci. J. 30:93-98
3. Al-Shamary, A. H. A., and N. I. Abdalali. 2011. Detection of microbial load in imported UHT milk in Baghdad. Al-Anbar J. Vet. Sci. 4:103-107
4. Alm, E. W., D. Zimbler, E. Callahan, and E. Plomaritis. 2014. Patterns and persistence of antibiotic resistance in faecal indicator bacteria from freshwater recreational beaches. J. Appl. Microbiol. 117:273-285
5. Amir, A., A. Zeisel, O. Zuk, M. Elgart, S. Stern, O. Shamir, P. J. Turnbaugh, Y. Soen, and N. Shental. 2013. High-resolution microbial community reconstruction by integrating short reads from multiple 16S rRNA regions. Nucleic Acids Res. 41:e205
6. Barancelli, G. V., T. M. Camargo, N. G. Gagliardi, E. Porto, R. A. Souza, F. Campioni, J. P. Falcao, E. Hofer, A. G. Cruz, and C. A. Oliveira. 2014. Pulsed-field gel electrophoresis characterization of Listeria monocytogenes isolates from cheese manufacturing plants in Sao Paulo, Brazil. Int. J. Food Microbiol. 173:21-29
7. Caporaso, J. G., K. Bittinger, F. D. Bushman, T. Z. DeSantis, G. L. Andersen, and R. Knight. 2010a. PyNAST: A flexible tool for aligning sequences to a template alignment. Bioinformatics 26:266-267
8. Caporaso, J. G., J. Kuczynski, J. Stombaugh, K. Bittinger, F. D. Bushman, E. K. Costello, N. Fierer, A. G. Pena, J. K. Goodrich, J. I. Gordon, G. A. Huttley, S. T. Kelley, D. Knights, J. E. Koenig, R. E. Ley, C. A. Lozupone, D. McDonald, B. D. Muegge, M. Pirrung, J. Reeder, J. R. Sevinsky, P. J. Turnbaugh, W. A. Walters, J. Widmann, T. Yatsunenko, J. Zaneveld, and R. Knight. 2010b. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7:335-336
9. Cole, J. R., B. Chai, R. J. Farris, Q. Wang, A. S. Kulam-Syed-Mohideen, D. M. McGarrell, A. M. Bandela, E. Cardenas, G. M. Garrity, and J. M. Tiedje. 2007. The ribosomal database project (RDP-II): Introducing myRDP space and quality controlled public data. Nucleic Acids Res. 35:D169-D172
10. de Boer, E., and R. R. Beumer. 1999. Methodology for detection and typing of foodborne microorganisms. Int. J. Food Microbiol. 50:119-130
11. Edgar, R. C. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26:2460-2461
12. Fuller, F., J. Beghin, and S. Rozelle. 2007. Consumption of dairy products in urban China: Results from Beijing, Shanghai and Guangzhou. Aust. J. Agric. Resour. Econ. 51:459-474
13. Jahne, M. A., S. W. Rogers, I. P. Ramler, E. Holder, and G. Hayes. 2015. Hierarchal clustering yields insight into multidrug-resistant bacteria isolated from a cattle feedlot wastewater treatment system. Environ. Monit. Assess. 187:4168
14. Janštová, B., M. Dračková, and L. Vorlová. 2006. Effect of Bacillus cereus enzymes on milk quality following ultra high temperature processing. Acta Vet. (Brno) 75:601-609
15. Johnston, D. W., J. Bruce, and J. Hill. 1983. Incidence of antibioticresistant Escherichia coli in milk produced in the west of Scotland. J. Appl. Bacteriol. 54:77-83
16. Jongenburger, I., M. W. Reij, E. P. Boer, L. G. Gorris, and M. H. Zwietering. 2011. Actual distribution of Cronobacter spp. in industrial batches of powdered infant formula and consequences for performance of sampling strategies. Int. J. Food Microbiol. 151:62-69
17. Kaylegian, K. E., R. Moag, D. M. Galton, and K. J. Boor. 2008. Raw milk consumption beliefs and practices among New York State dairy producers. Food Prot. Trends 28:184-191
18. Kim, S. A., S. W. Oh, Y. M. Lee, J. Y. Imm, I. G. Hwang, D. H. Kang, and M. S. Rhee. 2011. Microbial contamination of food products consumed by infants and babies in Korea. Lett. Appl. Microbiol. 53:532-538
19. Liu, W., Y. Zheng, L. Y. Kwok, Z. H. Sun, J. C. Zhang, Z. Guo, Q. C. Hou, B. L. G. Menghe, and H. P. Zhang. 2015. High-throughput sequencing for the detection of the bacterial and fungal diversity in Mongolian naturally fermented cow's milk in Russia. BMC Microbiol. 15:45
20. Lozupone, C., and R. Knight. 2005. UniFrac: A new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71:8228-8235
21. Mosher, J. J., E. L. Bernberg, O. Shevchenko, J. Kan, and L. A. Kaplan. 2013. Efficacy of a 3rd generation high-throughput sequencing platform for analyses of 16S rRNA genes from environmental samples. J. Microbiol. Methods 95:175-181
22. Oliver, S. P., K. J. Boor, S. C. Murphy, and S. E. Murinda. 2009. Food safety hazards associated with consumption of raw milk. Foodborne Pathog. Dis. 6:793-806
23. Price, M. N., P. S. Dehal, and A. P. Arkin. 2009. FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix. Mol. Biol. Evol. 26:1641-1650
24. Remenant, B., E. Jaffres, X. Dousset, M. F. Pilet, and M. Zagorec. 2015. Bacterial spoilers of food: Behavior, fitness and functional properties. Food Microbiol. 45:45-53. http://dx.doi.org/10.1016/j. fm.2014.03.009
25. Ruusunen, M., M. Salonen, H. Pulkkinen, M. Huuskonen, S. Hellstrom, J. Revez, M. L. Hanninen, M. Fredriksson-Ahomaa, and M. Lindstrom. 2013. Pathogenic bacteria in Finnish bulk tank milk. Foodborne Pathog. Dis. 10:99-106
26. Scheldeman, P., L. Herman, S. Foster, and M. Heyndrickx. 2006. Bacillus sporothermodurans and other highly heat-resistant spore formers in milk. J. Appl. Microbiol. 101:542-555
27. Schloss, P. D., S. L. Westcott, M. L. Jenior, and S. K. Highlander. 2015. Sequencing 16S rRNA gene fragments using the PacBiol. SMRT DNA sequencing system. PeerJ http://dx.doi.org/10.7287/peerj.preprints.778v1
28. Stenfors Arnesen, L. P., A. Fagerlund, and P. E. Granum. 2008. From soil to gut: Bacillus cereus and its food poisoning toxins. FEMS Microbiol. Rev. 32:579-606
29. Wang, M., B. Cao, Q. Gao, Y. Sun, P. Liu, L. Feng, and L. Wang. 2009. Detection of Enterobacter sakazakii and other pathogens associated with infant formula powder by use of a DNA microarray. J. Clin. Microbiol. 47:3178-3184
30. Wareth, G., F. Melzer, M. C. Elschner, H. Neubauer, and U. Roesler. 2014. Detection of Brucella melitensis in bovine milk and milk products from apparently healthy animals in Egypt by real-time PCR. J. Infect. Dev. Ctries. 8:1339-1343
31. Zhang, W., Z. Sun, B. Menghe, and H. Zhang. 2015. Short communication: Single molecule, real-time sequencing technology revealed species-and strain-specific methylation patterns of 2 Lactobacillus strains. J. Dairy Sci. 98:3020-3024