-
1
-
-
34547587566
-
Antiviral immunity directed by small RNAs
-
Ding SW, Voinnet O (2007) Antiviral immunity directed by small RNAs. Cell 130(3):413-426.
-
(2007)
Cell
, vol.130
, Issue.3
, pp. 413-426
-
-
Ding, S.W.1
Voinnet, O.2
-
2
-
-
84886066428
-
Is RNA interference a physiologically relevant innate antiviral immune response in mammals?
-
Cullen BR, Cherry S, tenOever BR (2013) Is RNA interference a physiologically relevant innate antiviral immune response in mammals? Cell Host Microbe 14(4):374-378.
-
(2013)
Cell Host Microbe
, vol.14
, Issue.4
, pp. 374-378
-
-
Cullen, B.R.1
Cherry, S.2
TenOever, B.R.3
-
3
-
-
0032545933
-
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
-
Fire A, et al. (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391(6669):806-811.
-
(1998)
Nature
, vol.391
, Issue.6669
, pp. 806-811
-
-
Fire, A.1
-
4
-
-
77649239548
-
Six RNA viruses and forty-one hosts: Viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems
-
Parameswaran P, et al. (2010) Six RNA viruses and forty-one hosts: Viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems. PLoS Pathog 6(2):e1000764.
-
(2010)
PLoS Pathog
, vol.6
, Issue.2
, pp. e1000764
-
-
Parameswaran, P.1
-
5
-
-
84904038337
-
The Mammalian response to virus infection is independent of small RNA silencing
-
Backes S, et al. (2014) The Mammalian response to virus infection is independent of small RNA silencing. Cell Reports 8(1):114-125.
-
(2014)
Cell Reports
, vol.8
, Issue.1
, pp. 114-125
-
-
Backes, S.1
-
6
-
-
84904600856
-
Replication of many human viruses is refractory to inhibition by endogenous cellular microRNAs
-
Bogerd HP, et al. (2014) Replication of many human viruses is refractory to inhibition by endogenous cellular microRNAs. J Virol 88(14):8065-8076.
-
(2014)
J Virol
, vol.88
, Issue.14
, pp. 8065-8076
-
-
Bogerd, H.P.1
-
7
-
-
84891595161
-
Identification of RNase L-dependent, 3'-end-modified, viral small RNAs in Sindbis virus-infected mammalian cells
-
Girardi E, Chane-Woon-Ming B, Messmer M, Kaukinen P, Pfeffer S (2013) Identification of RNase L-dependent, 3'-end-modified, viral small RNAs in Sindbis virus-infected mammalian cells. MBio 4(6):e00698-e13.
-
(2013)
MBio
, vol.4
, Issue.6
, pp. e00698-e00713
-
-
Girardi, E.1
Chane-Woon-Ming, B.2
Messmer, M.3
Kaukinen, P.4
Pfeffer, S.5
-
8
-
-
84885583303
-
Antiviral RNA interference in mammalian cells
-
Maillard PV, et al. (2013) Antiviral RNA interference in mammalian cells. Science 342(6155):235-238.
-
(2013)
Science
, vol.342
, Issue.6155
, pp. 235-238
-
-
Maillard, P.V.1
-
9
-
-
82455202433
-
DsRNA expression in the mouse elicits RNAi in oocytes and low adenosine deamination in somatic cells
-
Nejepinska J, et al. (2012) dsRNA expression in the mouse elicits RNAi in oocytes and low adenosine deamination in somatic cells. Nucleic Acids Res 40(1):399-413.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.1
, pp. 399-413
-
-
Nejepinska, J.1
-
10
-
-
54349104464
-
Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs
-
Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R (2008) Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs. Genes Dev 22(20):2773-2785.
-
(2008)
Genes Dev
, vol.22
, Issue.20
, pp. 2773-2785
-
-
Babiarz, J.E.1
Ruby, J.G.2
Wang, Y.3
Bartel, D.P.4
Blelloch, R.5
-
11
-
-
44349159416
-
Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes
-
Tam OH, et al. (2008) Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes. Nature 453(7194):534-538.
-
(2008)
Nature
, vol.453
, Issue.7194
, pp. 534-538
-
-
Tam, O.H.1
-
12
-
-
44349130233
-
Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
-
Watanabe T, et al. (2008) Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes. Nature 453(7194):539-543.
-
(2008)
Nature
, vol.453
, Issue.7194
, pp. 539-543
-
-
Watanabe, T.1
-
13
-
-
84887865235
-
A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes
-
Flemr M, et al. (2013) A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes. Cell 155(4):807-816.
-
(2013)
Cell
, vol.155
, Issue.4
, pp. 807-816
-
-
Flemr, M.1
-
14
-
-
0036847540
-
Ribonuclease activity and RNA binding of recombinant human Dicer
-
Provost P, et al. (2002) Ribonuclease activity and RNA binding of recombinant human Dicer. EMBO J 21(21):5864-5874.
-
(2002)
EMBO J
, vol.21
, Issue.21
, pp. 5864-5874
-
-
Provost, P.1
-
15
-
-
0036845374
-
Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP
-
Zhang H, Kolb FA, Brondani V, Billy E, Filipowicz W (2002) Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP. EMBO J 21(21):5875-5885.
-
(2002)
EMBO J
, vol.21
, Issue.21
, pp. 5875-5885
-
-
Zhang, H.1
Kolb, F.A.2
Brondani, V.3
Billy, E.4
Filipowicz, W.5
-
16
-
-
44649136660
-
Autoinhibition of human dicer by its internal helicase domain
-
Ma E, MacRae IJ, Kirsch JF, Doudna JA (2008) Autoinhibition of human dicer by its internal helicase domain. J Mol Biol 380(1):237-243.
-
(2008)
J Mol Biol
, vol.380
, Issue.1
, pp. 237-243
-
-
Ma, E.1
MacRae, I.J.2
Kirsch, J.F.3
Doudna, J.A.4
-
17
-
-
84901402848
-
Derivation and characterization of Dicer- and microRNA-deficient human cells
-
Bogerd HP, Whisnant AW, Kennedy EM, Flores O, Cullen BR (2014) Derivation and characterization of Dicer- and microRNA-deficient human cells. RNA 20(6):923-937.
-
(2014)
RNA
, vol.20
, Issue.6
, pp. 923-937
-
-
Bogerd, H.P.1
Whisnant, A.W.2
Kennedy, E.M.3
Flores, O.4
Cullen, B.R.5
-
18
-
-
84883197339
-
The double-stranded RNA binding domain of human Dicer functions as a nuclear localization signal
-
Doyle M, et al. (2013) The double-stranded RNA binding domain of human Dicer functions as a nuclear localization signal. RNA 19(9):1238-1252.
-
(2013)
RNA
, vol.19
, Issue.9
, pp. 1238-1252
-
-
Doyle, M.1
-
19
-
-
84872851598
-
The multiple faces of proteinkinase R in antiviral defense
-
Munir M, Berg M (2013) The multiple faces of proteinkinase R in antiviral defense. Virulence 4(1):85-89.
-
(2013)
Virulence
, vol.4
, Issue.1
, pp. 85-89
-
-
Munir, M.1
Berg, M.2
-
20
-
-
42449121506
-
PKR in innate immunity, cancer, and viral oncolysis
-
Balachandran S, Barber GN (2007) PKR in innate immunity, cancer, and viral oncolysis. Methods Mol Biol 383:277-301.
-
(2007)
Methods Mol Biol
, vol.383
, pp. 277-301
-
-
Balachandran, S.1
Barber, G.N.2
-
21
-
-
84892765883
-
Genome-scale CRISPR-Cas9 knockout screening in human cells
-
Shalem O, et al. (2014) Genome-scale CRISPR-Cas9 knockout screening in human cells. Science 343(6166):84-87.
-
(2014)
Science
, vol.343
, Issue.6166
, pp. 84-87
-
-
Shalem, O.1
-
22
-
-
84898993533
-
Differential RISC association of endogenous human microRNAs predicts their inhibitory potential
-
Flores O, Kennedy EM, Skalsky RL, Cullen BR (2014) Differential RISC association of endogenous human microRNAs predicts their inhibitory potential. Nucleic Acids Res 42(7):4629-4639.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.7
, pp. 4629-4639
-
-
Flores, O.1
Kennedy, E.M.2
Skalsky, R.L.3
Cullen, B.R.4
-
23
-
-
58149487625
-
Trafficking through the Rev/RRE pathway is essential for efficient inhibition of human immunodeficiency virus type 1 by an antisense RNA derived from the envelope gene
-
Ward AM, Rekosh D, Hammarskjold ML (2009) Trafficking through the Rev/RRE pathway is essential for efficient inhibition of human immunodeficiency virus type 1 by an antisense RNA derived from the envelope gene. J Virol 83(2):940-952.
-
(2009)
J Virol
, vol.83
, Issue.2
, pp. 940-952
-
-
Ward, A.M.1
Rekosh, D.2
Hammarskjold, M.L.3
-
24
-
-
72149114640
-
Structural and functional diversity of viral IRESes
-
Balvay L, Soto Rifo R, Ricci EP, Decimo D, Ohlmann T (2009) Structural and functional diversity of viral IRESes. Biochim Biophys Acta 1789(9-10):542-557.
-
(2009)
Biochim Biophys Acta
, vol.1789
, Issue.9-10
, pp. 542-557
-
-
Balvay, L.1
Soto Rifo, R.2
Ricci, E.P.3
Decimo, D.4
Ohlmann, T.5
-
25
-
-
67149084571
-
MicroRNA-mediated species-specific attenuation of influenza A virus
-
Perez JT, et al. (2009) MicroRNA-mediated species-specific attenuation of influenza A virus. Nat Biotechnol 27(6):572-576.
-
(2009)
Nat Biotechnol
, vol.27
, Issue.6
, pp. 572-576
-
-
Perez, J.T.1
-
26
-
-
77954927642
-
Engineered RNA viral synthesis of microRNAs
-
Varble A, et al. (2010) Engineered RNA viral synthesis of microRNAs. Proc Natl Acad Sci USA 107(25):11519-11524.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.25
, pp. 11519-11524
-
-
Varble, A.1
-
27
-
-
84893438707
-
A versatile RNA vector for delivery of coding and noncoding RNAs
-
Schmid S, Zony LC, ten Oever BR (2014) A versatile RNA vector for delivery of coding and noncoding RNAs. J Virol 88(4):2333-2336.
-
(2014)
J Virol
, vol.88
, Issue.4
, pp. 2333-2336
-
-
Schmid, S.1
Zony, L.C.2
Ten Oever, B.R.3
-
28
-
-
1842843155
-
Human influenza virus NS1 protein enhances viral pathogenicity and acts as an RNA silencing suppressor in plants
-
Delgadillo MO, Sáenz P, Salvador B, García JA, Simón-Mateo C (2004) Human influenza virus NS1 protein enhances viral pathogenicity and acts as an RNA silencing suppressor in plants. J Gen Virol 85(Pt 4):993-999.
-
(2004)
J Gen Virol
, vol.85
, pp. 993-999
-
-
Delgadillo, M.O.1
Sáenz, P.2
Salvador, B.3
García, J.A.4
Simón-Mateo, C.5
-
29
-
-
1842832222
-
The influenza A virus NS1 protein binds small interfering RNAs and suppresses RNA silencing in plants
-
Bucher E, Hemmes H, de Haan P, Goldbach R, PrinsM (2004) The influenza A virus NS1 protein binds small interfering RNAs and suppresses RNA silencing in plants. J Gen Virol 85(Pt 4):983-991.
-
(2004)
J Gen Virol
, vol.85
, pp. 983-991
-
-
Bucher, E.1
Hemmes, H.2
De Haan, P.3
Goldbach, R.4
Prins, M.5
-
30
-
-
0037022382
-
Stable suppression of gene expression by RNAi in mammalian cells
-
Paddison PJ, Caudy AA, Hannon GJ (2002) Stable suppression of gene expression by RNAi in mammalian cells. Proc Natl Acad Sci USA 99(3):1443-1448.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.3
, pp. 1443-1448
-
-
Paddison, P.J.1
Caudy, A.A.2
Hannon, G.J.3
-
31
-
-
0034636715
-
DsRNA-mediated gene silencing in cultured Drosophila cells: A tissue culture model for the analysis of RNA interference
-
Caplen NJ, Fleenor J, Fire A, Morgan RA (2000) dsRNA-mediated gene silencing in cultured Drosophila cells: A tissue culture model for the analysis of RNA interference. Gene 252(1-2):95-105.
-
(2000)
Gene
, vol.252
, Issue.1-2
, pp. 95-105
-
-
Caplen, N.J.1
Fleenor, J.2
Fire, A.3
Morgan, R.A.4
-
32
-
-
0034775750
-
Specific double-stranded RNA interference in undifferentiated mouse embryonic stem cells
-
Yang S, Tutton S, Pierce E, Yoon K (2001) Specific double-stranded RNA interference in undifferentiated mouse embryonic stem cells. Mol Cell Biol 21(22):7807-7816.
-
(2001)
Mol Cell Biol
, vol.21
, Issue.22
, pp. 7807-7816
-
-
Yang, S.1
Tutton, S.2
Pierce, E.3
Yoon, K.4
-
33
-
-
84878386885
-
Mouse embryonic stem cells are deficient in type I interferon expression in response to viral infections and double-stranded RNA
-
Wang R, et al. (2013) Mouse embryonic stem cells are deficient in type I interferon expression in response to viral infections and double-stranded RNA. J Biol Chem 288(22):15926-15936.
-
(2013)
J Biol Chem
, vol.288
, Issue.22
, pp. 15926-15936
-
-
Wang, R.1
-
34
-
-
26644472182
-
Absence of non-specific effects of RNA interference triggered by long double-stranded RNA in mouse oocytes
-
Stein P, Zeng F, Pan H, Schultz RM (2005) Absence of non-specific effects of RNA interference triggered by long double-stranded RNA in mouse oocytes. Dev Biol 286(2):464-471.
-
(2005)
Dev Biol
, vol.286
, Issue.2
, pp. 464-471
-
-
Stein, P.1
Zeng, F.2
Pan, H.3
Schultz, R.M.4
-
35
-
-
77956171983
-
Viral suppressors of RNA-based viral immunity: Host targets
-
Wu Q, Wang X, Ding SW (2010) Viral suppressors of RNA-based viral immunity: Host targets. Cell Host Microbe 8(1):12-15.
-
(2010)
Cell Host Microbe
, vol.8
, Issue.1
, pp. 12-15
-
-
Wu, Q.1
Wang, X.2
Ding, S.W.3
-
36
-
-
77957957039
-
Organelle-like membrane compartmentalization of positive-strand RNA virus replication factories
-
den Boon JA, Ahlquist P (2010) Organelle-like membrane compartmentalization of positive-strand RNA virus replication factories. Annu Rev Microbiol 64:241-256.
-
(2010)
Annu Rev Microbiol
, vol.64
, pp. 241-256
-
-
Den Boon, J.A.1
Ahlquist, P.2
-
37
-
-
81755166298
-
Virus factories, double membrane vesicles and viroplasm generated in animal cells
-
Netherton CL, Wileman T (2011) Virus factories, double membrane vesicles and viroplasm generated in animal cells. Curr Opin Virol 1(5):381-387.
-
(2011)
Curr Opin Virol
, vol.1
, Issue.5
, pp. 381-387
-
-
Netherton, C.L.1
Wileman, T.2
-
38
-
-
0032995665
-
RNA binding by the novel helical domain of the influenza virus NS1 protein requires its dimer structure and a small number of specific basic amino acids
-
Wang W, et al. (1999) RNA binding by the novel helical domain of the influenza virus NS1 protein requires its dimer structure and a small number of specific basic amino acids. RNA 5(2):195-205.
-
(1999)
RNA
, vol.5
, Issue.2
, pp. 195-205
-
-
Wang, W.1
-
39
-
-
0037385251
-
Double-stranded RNA-binding proteins could suppress RNA interference-mediated antiviral defences
-
Lichner Z, Silhavy D, Burgyán J (2003) Double-stranded RNA-binding proteins could suppress RNA interference-mediated antiviral defences. J Gen Virol 84(Pt 4):975-980.
-
(2003)
J Gen Virol
, vol.84
, pp. 975-980
-
-
Lichner, Z.1
Silhavy, D.2
Burgyán, J.3
-
40
-
-
0345004816
-
Influenza A virus lacking the NS1 gene replicates in interferondeficient systems
-
García-Sastre A, et al. (1998) Influenza A virus lacking the NS1 gene replicates in interferondeficient systems. Virology 252(2):324-330.
-
(1998)
Virology
, vol.252
, Issue.2
, pp. 324-330
-
-
García-Sastre, A.1
-
41
-
-
70349254339
-
Influenza viruses control the vertebrate type I interferon system: Factors, mechanisms, and consequences
-
Wolff T, Ludwig S (2009) Influenza viruses control the vertebrate type I interferon system: Factors, mechanisms, and consequences. J Interferon Cytokine Res 29(9):549-557.
-
(2009)
J Interferon Cytokine Res
, vol.29
, Issue.9
, pp. 549-557
-
-
Wolff, T.1
Ludwig, S.2
-
42
-
-
84861309359
-
Attenuated influenza virus construct with enhanced hemagglutinin protein expression
-
Maamary J, et al. (2012) Attenuated influenza virus construct with enhanced hemagglutinin protein expression. J Virol 86(10):5782-5790.
-
(2012)
J Virol
, vol.86
, Issue.10
, pp. 5782-5790
-
-
Maamary, J.1
-
43
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10(3):R25.
-
(2009)
Genome Biol
, vol.10
, Issue.3
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
44
-
-
84891818318
-
MiRBase: Annotating high confidence micro-RNAs using deep sequencing data
-
Database issue
-
Kozomara A, Griffiths-Jones S (2014) miRBase: Annotating high confidence micro-RNAs using deep sequencing data. Nucleic Acids Res 42(Database issue):D68-D73.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D68-D73
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
45
-
-
84891768365
-
Ensembl 2014
-
Database issue
-
Flicek P, et al. (2014) Ensembl 2014. Nucleic Acids Res 42(Database issue):D749-D755.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D749-D755
-
-
Flicek, P.1
-
46
-
-
58149179988
-
The Functional RNA Database 3.0: Databases to support mining and annotation of functional RNAs
-
Database issue
-
Mituyama T, et al. (2009) The Functional RNA Database 3.0: Databases to support mining and annotation of functional RNAs. Nucleic Acids Res 37(Database issue):D89-D92.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D89-D92
-
-
Mituyama, T.1
-
47
-
-
0035710746
-
Analysis of relative gene expression data using realtime quantitative PCR and the 2 (-Delta Delta C (T)) Method
-
Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using realtime quantitative PCR and the 2(-Delta Delta C (T)) Method. Methods 25(4):402-408.
-
(2001)
Methods
, vol.25
, Issue.4
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
|