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Volumn 20, Issue 6, 2014, Pages 923-937

Derivation and characterization of Dicer- and microRNA-deficient human cells

Author keywords

Dicer; MicroRNAs; Post transcriptional regulation; RISC; RNA interference

Indexed keywords

DICER; DICER 1 PROTEIN; MICRORNA; MICRORNA 155; MICRORNA 30; RNA INDUCED SILENCING COMPLEX; UNCLASSIFIED DRUG;

EID: 84901402848     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.044545.114     Document Type: Article
Times cited : (85)

References (71)
  • 4
    • 73649109602 scopus 로고    scopus 로고
    • A mammalian herpesvirus uses noncanonical expression and processingmechanisms to generate viral microRNAs
    • Bogerd HP, Karnowski HW, Cai X, Shin J, Pohlers M, Cullen BR. 2010.A mammalian herpesvirus uses noncanonical expression and processingmechanisms to generate viral microRNAs. Mol Cell 37:135-142.
    • (2010) Mol Cell , vol.37 , pp. 135-142
    • Bogerd, H.P.1    Karnowski, H.W.2    Cai, X.3    Shin, J.4    Pohlers, M.5    Cullen, B.R.6
  • 5
    • 80053931856 scopus 로고    scopus 로고
    • AKaposi's sarcoma-associated herpesvirus-encoded ortholog ofmicroRNA miR-155 induces human splenic B-cell expansion inNOD/LtSz-scid IL2Rγnull mice
    • Boss IW, Nadeau PE, Abbott JR, Yang Y, Mergia A, Renne R. 2011. AKaposi's sarcoma-associated herpesvirus-encoded ortholog ofmicroRNA miR-155 induces human splenic B-cell expansion inNOD/LtSz-scid IL2Rγnull mice. J Virol 85: 9877-9886.
    • (2011) J Virol , vol.85 , pp. 9877-9886
    • Boss, I.W.1    Nadeau, P.E.2    Abbott, J.R.3    Yang, Y.4    Mergia, A.5    Renne, R.6
  • 8
    • 80053023566 scopus 로고    scopus 로고
    • A primate herpesvirus uses the integratorcomplex to generate viral microRNAs
    • Cazalla D, Xie M, Steitz JA. 2011. A primate herpesvirus uses the integratorcomplex to generate viral microRNAs. Mol Cell 43: 982-992.
    • (2011) Mol Cell , vol.43 , pp. 982-992
    • Cazalla, D.1    Xie, M.2    Steitz, J.A.3
  • 9
    • 77953183812 scopus 로고    scopus 로고
    • A dicer-independentmiRNA biogenesis pathway that requires Ago catalysis
    • Cheloufi S, Dos Santos CO, Chong MM, Hannon GJ. 2010. A dicer-independentmiRNA biogenesis pathway that requires Ago catalysis.Nature 465: 584-589.
    • (2010) Nature , vol.465 , pp. 584-589
    • Cheloufi, S.1    Dos Santos, C.O.2    Chong, M.M.3    Hannon, G.J.4
  • 10
  • 15
    • 10944254152 scopus 로고    scopus 로고
    • Transcription and processing of human microRNAprecursors
    • Cullen BR. 2004. Transcription and processing of human microRNAprecursors. Mol Cell 16: 861-865.
    • (2004) Mol Cell , vol.16 , pp. 861-865
    • Cullen, B.R.1
  • 16
    • 84886066428 scopus 로고    scopus 로고
    • Is RNA interference a physiologicallyrelevant innate antiviral immune response in mammals?
    • Cullen BR, Cherry S, tenOever BR. 2013. Is RNA interference a physiologicallyrelevant innate antiviral immune response in mammals?Cell Host Microbe 14: 374-378.
    • (2013) Cell Host Microbe , vol.14 , pp. 374-378
    • Cullen, B.R.1    Cherry, S.2    Tenoever, B.R.3
  • 19
    • 84887865235 scopus 로고    scopus 로고
    • A retrotransposon-driven dicer isoform directs endogenoussmall interfering RNA production in mouse oocytes
    • Flemr M, Malik R, Franke V, Nejepinska J, Sedlacek R, Vlahovicek K,Svoboda P. 2013. A retrotransposon-driven dicer isoform directs endogenoussmall interfering RNA production in mouse oocytes. Cell155: 807-816.
    • (2013) Cell , vol.155 , pp. 807-816
    • Flemr, M.1    Malik, R.2    Franke, V.3    Nejepinska, J.4    Sedlacek, R.5    Vlahovicek, K.6    Svoboda, P.7
  • 20
    • 84878537894 scopus 로고    scopus 로고
    • Mutational inactivation of herpes simplex virus1 microRNAs identifies viral mRNA targets and reveals phenotypiceffects in culture
    • Flores O, Nakayama S, Whisnant AW, Javanbakht H, Cullen BR,Bloom DC. 2013. Mutational inactivation of herpes simplex virus1 microRNAs identifies viral mRNA targets and reveals phenotypiceffects in culture. J Virol 87: 6589-6603.
    • (2013) J Virol , vol.87 , pp. 6589-6603
    • Flores, O.1    Nakayama, S.2    Whisnant, A.W.3    Javanbakht, H.4    Cullen Brbloom, D.C.5
  • 23
    • 84868106469 scopus 로고    scopus 로고
    • Dicerpartner proteins tune the length of mature miRNAs in flies andmammals
    • Fukunaga R, Han BW, Hung JH, Xu J, Weng Z, Zamore PD. 2012. Dicerpartner proteins tune the length of mature miRNAs in flies andmammals. Cell 151: 533-546.
    • (2012) Cell , vol.151 , pp. 533-546
    • Fukunaga, R.1    Han, B.W.2    Hung, J.H.3    Xu, J.4    Weng, Z.5    Zamore, P.D.6
  • 28
    • 34250805982 scopus 로고    scopus 로고
    • MicroRNA Targeting Specificity in Mammals: Determinants beyond Seed Pairing
    • DOI 10.1016/j.molcel.2007.06.017, PII S1097276507004078
    • Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP,Bartel DP. 2007. MicroRNA targeting specificity in mammals: determinantsbeyond seed pairing. Mol Cell 27: 91-105. (Pubitemid 46991392)
    • (2007) Molecular Cell , vol.27 , Issue.1 , pp. 91-105
    • Grimson, A.1    Farh, K.K.-H.2    Johnston, W.K.3    Garrett-Engele, P.4    Lim, L.P.5    Bartel, D.P.6
  • 30
    • 0035839109 scopus 로고    scopus 로고
    • Argonaute2, a link between genetic and biochemical analyses of RNAi
    • DOI 10.1126/science.1064023
    • Hammond SM, Boettcher S, Caudy AA, Kobayashi R, Hannon GJ. 2001.Argonaute2, a link between genetic and biochemical analyses ofRNAi. Science 293: 1146-1150. (Pubitemid 32758097)
    • (2001) Science , vol.293 , Issue.5532 , pp. 1146-1150
    • Hammond, S.M.1    Boettcher, S.2    Caudy, A.A.3    Kobayashi, R.4    Hannon, G.J.5
  • 31
    • 10644234841 scopus 로고    scopus 로고
    • The Drosha-DGCR8 complex in primary microRNA processing
    • DOI 10.1101/gad.1262504
    • Han J, Lee Y, Yeom KH, Kim YK, Jin H, Kim VN. 2004. The Drosha-DGCR8 complex in primary microRNA processing. Genes Dev 18:3016-3027. (Pubitemid 39658171)
    • (2004) Genes and Development , vol.18 , Issue.24 , pp. 3016-3027
    • Han, J.1    Lee, Y.2    Yeom, K.-H.3    Kim, Y.-K.4    Jin, H.5    Kim, V.N.6
  • 32
    • 70350569212 scopus 로고    scopus 로고
    • EndosiRNAsdepend on a new isoform of loquacious and target artificiallyintroduced, high-copy sequences
    • Hartig JV, Esslinger S, Bottcher R, Saito K, Förstemann K. 2009. EndosiRNAsdepend on a new isoform of loquacious and target artificiallyintroduced, high-copy sequences. EMBO J 28: 2932-2944.
    • (2009) EMBO J , vol.28 , pp. 2932-2944
    • Hartig, J.V.1    Esslinger, S.2    Bottcher, R.3    Saito, K.4    Förstemann, K.5
  • 34
    • 0142165224 scopus 로고    scopus 로고
    • Functional siRNAs and miRNAs exhibit strand bias
    • DOI 10.1016/S0092-8674(03)00801-8
    • Khvorova A, Reynolds A, Jayasena SD. 2003. Functional siRNAs andmiRNAs exhibit strand bias. Cell 115: 209-216. (Pubitemid 37329584)
    • (2003) Cell , vol.115 , Issue.2 , pp. 209-216
    • Khvorova, A.1    Reynolds, A.2    Jayasena, S.D.3
  • 35
    • 78651293534 scopus 로고    scopus 로고
    • MiRBase: Integrating microRNAannotation and deep-sequencing data
    • Kozomara A, Griffiths-Jones S. 2011. miRBase: integrating microRNAannotation and deep-sequencing data. Nucleic Acids Res 39: D152-D157.
    • (2011) Nucleic Acids Res , vol.39
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 36
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 37
    • 84867678226 scopus 로고    scopus 로고
    • TRBP alters human precursor microRNAprocessing in vitro
    • Lee HY, Doudna JA. 2012. TRBP alters human precursor microRNAprocessing in vitro. RNA 18: 2012-2019.
    • (2012) RNA , vol.18 , pp. 2012-2019
    • Lee, H.Y.1    Doudna, J.A.2
  • 38
    • 1842816517 scopus 로고    scopus 로고
    • Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways
    • DOI 10.1016/S0092-8674(04)00261-2, PII S0092867404002612
    • Lee YS, Nakahara K, Pham JW, Kim K, He Z, Sontheimer EJ,Carthew RW. 2004. Distinct roles for Drosophila Dicer-1 andDicer-2 in the siRNA/miRNA silencing pathways. Cell 117: 69-81. (Pubitemid 38469899)
    • (2004) Cell , vol.117 , Issue.1 , pp. 69-81
    • Lee, Y.S.1    Nakahara, K.2    Pham, J.W.3    Kim, K.4    He, Z.5    Sontheimer, E.J.6    Carthew, R.W.7
  • 39
    • 84880411222 scopus 로고    scopus 로고
    • Differentialroles of human Dicer-binding proteins TRBP and PACT in smallRNA processing
    • Lee HY, Zhou K, Smith AM, Noland CL, Doudna JA. 2013. Differentialroles of human Dicer-binding proteins TRBP and PACT in smallRNA processing. Nucleic Acids Res 41: 6568-6576.
    • (2013) Nucleic Acids Res , vol.41 , pp. 6568-6576
    • Lee, H.Y.1    Zhou, K.2    Smith, A.M.3    Noland, C.L.4    Doudna, J.A.5
  • 40
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • DOI 10.1016/j.cell.2004.12.035, PII S0092867404012607
    • Lewis BP, Burge CB, Bartel DP. 2005. Conserved seed pairing, oftenflanked by adenosines, indicates that thousands of human genesare microRNA targets. Cell 120: 15-20. (Pubitemid 40094598)
    • (2005) Cell , vol.120 , Issue.1 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 41
    • 78049489278 scopus 로고    scopus 로고
    • Virally induced cellular microRNA miR-155 plays a key role inB-cell immortalization by Epstein-Barr virus
    • Linnstaedt SD, Gottwein E, Skalsky RL, Luftig MA, Cullen BR. 2010.Virally induced cellular microRNA miR-155 plays a key role inB-cell immortalization by Epstein-Barr virus. J Virol 84: 11670-11678.
    • (2010) J Virol , vol.84 , pp. 11670-11678
    • Linnstaedt, S.D.1    Gottwein, E.2    Skalsky, R.L.3    Luftig, M.A.4    Cullen, B.R.5
  • 42
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2-δ δcT method
    • DOI 10.1006/meth.2001.1262
    • Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression datausing real-time quantitative PCR and the 2-δδC(T) method. Methods25: 402-408. (Pubitemid 34164012)
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 43
    • 44649136660 scopus 로고    scopus 로고
    • Autoinhibition of humandicer by its internal helicase domain
    • Ma E, MacRae IJ, Kirsch JF, Doudna JA. 2008. Autoinhibition of humandicer by its internal helicase domain. J Mol Biol 380: 237-243.
    • (2008) J Mol Biol , vol.380 , pp. 237-243
    • Ma, E.1    Macrae, I.J.2    Kirsch, J.F.3    Doudna, J.A.4
  • 45
    • 79952302385 scopus 로고    scopus 로고
    • De novo-engineered transcription activator-like effector(TALE) hybrid nuclease with novel DNA binding specificity createsdouble-strand breaks
    • Mahfouz MM, Li L, Shamimuzzaman M, Wibowo A, Fang X, Zhu JK.2011. De novo-engineered transcription activator-like effector(TALE) hybrid nuclease with novel DNA binding specificity createsdouble-strand breaks. Proc Natl Acad Sci 108: 2623-2628.
    • (2011) Proc Natl Acad Sci , vol.108 , pp. 2623-2628
    • Mahfouz, M.M.1    Li, L.2    Shamimuzzaman, M.3    Wibowo, A.4    Fang, X.5    Zhu, J.K.6
  • 47
    • 29144431656 scopus 로고    scopus 로고
    • A human, ATP-independent, RISC assembly machine fueled by pre-miRNA
    • DOI 10.1101/gad.1384005
    • Maniataki E, Mourelatos Z. 2005. A human, ATP-independent, RISCassembly machine fueled by pre-miRNA. Genes Dev 19: 2979-2990. (Pubitemid 41798114)
    • (2005) Genes and Development , vol.19 , Issue.24 , pp. 2979-2990
    • Maniataki, E.1    Mourelatos, Z.2
  • 49
    • 33847009079 scopus 로고    scopus 로고
    • Conservation of virallyencoded microRNAs in Kaposi sarcoma-associated herpesvirusin primary effusion lymphoma cell lines and in patients withKaposi sarcoma or multicentric Castleman disease
    • Marshall V, Parks T, Bagni R, Wang CD, Samols MA, Hu J, Wyvil KM,Aleman K, Little RF, Yarchoan R, et al. 2007. Conservation of virallyencoded microRNAs in Kaposi sarcoma-associated herpesvirusin primary effusion lymphoma cell lines and in patients withKaposi sarcoma or multicentric Castleman disease. J Infect Dis195: 645-659.
    • (2007) J Infect Dis , vol.195 , pp. 645-659
    • Marshall, V.1    Parks, T.2    Bagni, R.3    Wang, C.D.4    Samols, M.A.5    Hu, J.6    Wyvil, K.M.7    Aleman, K.8    Little, R.F.9    Yarchoan, R.10
  • 50
    • 84876532060 scopus 로고    scopus 로고
    • Argonaute2 expression is posttranscriptionallycoupled to microRNA abundance
    • Martinez NJ, Gregory RI. 2013. Argonaute2 expression is posttranscriptionallycoupled to microRNA abundance. RNA 19:605-612.
    • (2013) RNA , vol.19 , pp. 605-612
    • Martinez, N.J.1    Gregory, R.I.2
  • 52
    • 77149173174 scopus 로고    scopus 로고
    • Molecularmechanisms that funnel RNA precursors into endogenous small-interferingRNA and microRNA biogenesis pathways in Drosophila
    • Miyoshi K, Miyoshi T, Hartig JV, Siomi H, Siomi MC. 2010. Molecularmechanisms that funnel RNA precursors into endogenous small-interferingRNA and microRNA biogenesis pathways in Drosophila.RNA 16: 506-515.
    • (2010) RNA , vol.16 , pp. 506-515
    • Miyoshi, K.1    Miyoshi, T.2    Hartig, J.V.3    Siomi, H.4    Siomi, M.C.5
  • 54
    • 84874239350 scopus 로고    scopus 로고
    • Roles of R2D2, a cytoplasmic D2 body component, in the endogenoussiRNA pathway in Drosophila
    • Nishida KM, Miyoshi K, Ogino A, Miyoshi T, Siomi H, Siomi MC. 2013.Roles of R2D2, a cytoplasmic D2 body component, in the endogenoussiRNA pathway in Drosophila. Mol Cell 49: 680-691.
    • (2013) Mol Cell , vol.49 , pp. 680-691
    • Nishida, K.M.1    Miyoshi, K.2    Ogino, A.3    Miyoshi, T.4    Siomi, H.5    Siomi, M.C.6
  • 55
    • 79251558104 scopus 로고    scopus 로고
    • R2D2 organizessmall regulatory RNA pathways in Drosophila
    • Okamura K, Robine N, Liu Y, Liu Q, Lai EC. 2011. R2D2 organizessmall regulatory RNA pathways in Drosophila. Mol Cell Biol 31:884-896.
    • (2011) Mol Cell Biol , vol.31 , pp. 884-896
    • Okamura, K.1    Robine, N.2    Liu, Y.3    Liu, Q.4    Lai, E.C.5
  • 57
    • 34447097693 scopus 로고    scopus 로고
    • Intronic microRNA precursors that bypass Drosha processing
    • DOI 10.1038/nature05983, PII NATURE05983
    • Ruby JG, Jan CH, Bartel DP. 2007. Intronic microRNA precursors thatbypass Drosha processing. Nature 448: 83-86. (Pubitemid 47037009)
    • (2007) Nature , vol.448 , Issue.7149 , pp. 83-86
    • Ruby, J.G.1    Jan, C.H.2    Bartel, D.P.3
  • 59
    • 22744454230 scopus 로고    scopus 로고
    • Processing of premicroRNAsby the Dicer-1-Loquacious complex in Drosophila cells
    • Saito K, Ishizuka A, Siomi H, Siomi MC. 2005. Processing of premicroRNAsby the Dicer-1-Loquacious complex in Drosophila cells.PLoS Biol 3: e235.
    • (2005) PLoS Biol , vol.3
    • Saito, K.1    Ishizuka, A.2    Siomi, H.3    Siomi, M.C.4
  • 61
  • 62
    • 84886930408 scopus 로고    scopus 로고
    • Latency locus complementsmicroRNA 155 deficiency in vivo
    • Sin SH, Kim YB, Dittmer DP. 2013. Latency locus complementsmicroRNA 155 deficiency in vivo. J Virol 87: 11908-11911.
    • (2013) J Virol , vol.87 , pp. 11908-11911
    • Sin, S.H.1    Kim, Y.B.2    Dittmer, D.P.3
  • 65
    • 59949096548 scopus 로고    scopus 로고
    • Essential and overlappingfunctions for mammalian Argonautes in microRNA silencing
    • Su H, Trombly MI, Chen J, Wang X. 2009. Essential and overlappingfunctions for mammalian Argonautes in microRNA silencing.Genes Dev 23: 304-317.
    • (2009) Genes Dev , vol.23 , pp. 304-317
    • Su, H.1    Trombly, M.I.2    Chen, J.3    Wang, X.4
  • 69
    • 84934434289 scopus 로고    scopus 로고
    • Expression, purification, and analysis of recombinantDrosophila Dicer-1 and Dicer-2 enzymes
    • Ye X, Liu Q. 2008. Expression, purification, and analysis of recombinantDrosophila Dicer-1 and Dicer-2 enzymes. Methods Mol Biol 442:11-27.
    • (2008) Methods Mol Biol , vol.442 , pp. 11-27
    • Ye, X.1    Liu, Q.2
  • 70
    • 0347361541 scopus 로고    scopus 로고
    • Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs
    • DOI 10.1101/gad.1158803
    • Yi R, Qin Y, Macara IG, Cullen BR. 2003. Exportin-5 mediates the nuclearexport of pre-microRNAs and short hairpin RNAs. Genes Dev17: 3011-3016. (Pubitemid 38040764)
    • (2003) Genes and Development , vol.17 , Issue.24 , pp. 3011-3016
    • Yi, R.1    Qin, Y.2    Macara, I.G.3    Cullen, B.R.4
  • 71
    • 12844285548 scopus 로고    scopus 로고
    • Overexpression of Exportin 5 enhances RNA interference mediated by short hairpin RNAs and microRNAs
    • DOI 10.1261/rna.7233305
    • Yi R, Doehle BP, Qin Y, Macara IG, Cullen BR. 2005. Overexpression ofexportin 5 enhances RNA interference mediated by short hairpinRNAs and microRNAs. RNA 11: 220-226. (Pubitemid 40165636)
    • (2005) RNA , vol.11 , Issue.2 , pp. 220-226
    • Yi, R.1    Doehle, B.P.2    Qin, Y.3    Macara, I.G.4    Cullen, B.R.5


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