-
1
-
-
34547587566
-
Antiviral immunity directed by small RNAs
-
Ding SW, Voinnet O. 2007. Antiviral immunity directed by small RNAs. Cell 130:413-426.
-
(2007)
Cell
, vol.130
, pp. 413-426
-
-
Ding, S.W.1
Voinnet, O.2
-
2
-
-
31344461659
-
Innate immune recognition of viral infection
-
Kawai T, Akira S. 2006. Innate immune recognition of viral infection. Nat. Immunol. 7:131-137.
-
(2006)
Nat. Immunol
, vol.7
, pp. 131-137
-
-
Kawai, T.1
Akira, S.2
-
3
-
-
32944464648
-
Pathogen recognition and innate immunity
-
Akira S, Uematsu S, Takeuchi O. 2006. Pathogen recognition and innate immunity. Cell 124:783-801.
-
(2006)
Cell
, vol.124
, pp. 783-801
-
-
Akira, S.1
Uematsu, S.2
Takeuchi, O.3
-
4
-
-
36749069393
-
Interferons at age 50: Past, current and future impact on biomedicine
-
Borden EC, Sen GC, Uze G, Silverman RH, Ransohoff RM, Foster GR, Stark GR. 2007. Interferons at age 50: past, current and future impact on biomedicine. Nat. Rev. Drug Discov. 6:975-990.
-
(2007)
Nat. Rev. Drug Discov
, vol.6
, pp. 975-990
-
-
Borden, E.C.1
Sen, G.C.2
Uze, G.3
Silverman, R.H.4
Ransohoff, R.M.5
Foster, G.R.6
Stark, G.R.7
-
5
-
-
0032417696
-
Identification of genes differentially regulated by interferon alpha, beta, or gamma using oligonucleotide arrays
-
Der SD, Zhou A, Williams BR, Silverman RH. 1998. Identification of genes differentially regulated by interferon alpha, beta, or gamma using oligonucleotide arrays. Proc. Natl. Acad. Sci. U. S. A. 95:15623-15628.
-
(1998)
Proc. Natl. Acad. Sci. U. S. A
, vol.95
, pp. 15623-15628
-
-
Der, S.D.1
Zhou, A.2
Williams, B.R.3
Silverman, R.H.4
-
6
-
-
36348987303
-
Viral encounters with 2′,5′-oligoadenylate synthetase and RNase L during the interferon antiviral response
-
Silverman RH. 2007. Viral encounters with 2′,5′-oligoadenylate synthetase and RNase L during the interferon antiviral response. J. Virol. 81: 12720-12729.
-
(2007)
J. Virol
, vol.81
, pp. 12720-12729
-
-
Silverman, R.H.1
-
7
-
-
77649239548
-
Six RNA viruses and forty-one hosts: Viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems
-
doi:10.1371/journal.ppat.1000764
-
Parameswaran P, Sklan E, Wilkins C, Burgon T, Samuel MA, Lu R, Ansel KM, Heissmeyer V, Einav S, Jackson W, Doukas T, Paranjape S, Polacek C, dos Santos FB, Jalili R, Babrzadeh F, Gharizadeh B, Grimm D, Kay M, Koike S, Sarnow P, Ronaghi M, Ding SW, Harris E, Chow M, Diamond MS, Kirkegaard K, Glenn JS, Fire AZ. 2010. Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems. PLoS Pathog. 6:e1000764. doi:10.1371/journal.ppat.1000764.
-
(2010)
PLoS Pathog
, vol.6
-
-
Parameswaran, P.1
Sklan, E.2
Wilkins, C.3
Burgon, T.4
Samuel, M.A.5
Lu, R.6
Ansel, K.M.7
Heissmeyer, V.8
Einav, S.9
Jackson, W.10
Doukas, T.11
Paranjape, S.12
Polacek, C.13
dos Santos, F.B.14
Jalili, R.15
Babrzadeh, F.16
Gharizadeh, B.17
Grimm, D.18
Kay, M.19
Koike, S.20
Sarnow, P.21
Ronaghi, M.22
Ding, S.W.23
Harris, E.24
Chow, M.25
Diamond, M.S.26
Kirkegaard, K.27
Glenn, J.S.28
Fire, A.Z.29
more..
-
8
-
-
0035800521
-
A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA
-
Hutvágner G, McLachlan J, Pasquinelli AE, Bálint E, Tuschl T, Zamore PD. 2001. A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science 293:834-838.
-
(2001)
Science
, vol.293
, pp. 834-838
-
-
Hutvágner, G.1
McLachlan, J.2
Pasquinelli, A.E.3
Bálint, E.4
Tuschl, T.5
Zamore, P.D.6
-
9
-
-
0141843656
-
The nuclear RNase III Drosha initiates microRNA processing
-
Lee Y, Ahn C, Han J, Choi H, Kim J, Yim J, Lee J, Provost P, Rådmark O, Kim S, Kim VN. 2003. The nuclear RNase III Drosha initiates microRNA processing. Nature 425:415-419.
-
(2003)
Nature
, vol.425
, pp. 415-419
-
-
Lee, Y.1
Ahn, C.2
Han, J.3
Choi, H.4
Kim, J.5
Yim, J.6
Lee, J.7
Provost, P.8
Rådmark, O.9
Kim, S.10
Kim, V.N.11
-
10
-
-
77955902024
-
The widespread regulation of microRNA biogenesis, function and decay
-
Krol J, Loedige I, Filipowicz W. 2010. The widespread regulation of microRNA biogenesis, function and decay. Nat. Rev. Genet. 11:597-610.
-
(2010)
Nat. Rev. Genet
, vol.11
, pp. 597-610
-
-
Krol, J.1
Loedige, I.2
Filipowicz, W.3
-
11
-
-
35349009932
-
Interferon modulation of cellular microRNAs as an antiviral mechanism
-
Pedersen IM, Cheng G, Wieland S, Volinia S, Croce CM, Chisari FV, David M. 2007. Interferon modulation of cellular microRNAs as an antiviral mechanism. Nature 449:919-922.
-
(2007)
Nature
, vol.449
, pp. 919-922
-
-
Pedersen, I.M.1
Cheng, G.2
Wieland, S.3
Volinia, S.4
Croce, C.M.5
Chisari, F.V.6
David, M.7
-
12
-
-
17644363376
-
A cellular microRNA mediates antiviral defense in human cells
-
Lecellier CH, Dunoyer P, Arar K, Lehmann-Che J, Eyquem S, Himber C, Saïb A, Voinnet O. 2005. A cellular microRNA mediates antiviral defense in human cells. Science 308:557-560.
-
(2005)
Science
, vol.308
, pp. 557-560
-
-
Lecellier, C.H.1
Dunoyer, P.2
Arar, K.3
Lehmann-Che, J.4
Eyquem, S.5
Himber, C.6
Saïb, A.7
Voinnet, O.8
-
13
-
-
2342420041
-
Identification of virusencoded microRNAs
-
Pfeffer S, Zavolan M, Grässer FA, Chien M, Russo JJ, Ju J, John B, Enright AJ, Marks D, Sander C, Tuschl T. 2004. Identification of virusencoded microRNAs. Science 304:734-736.
-
(2004)
Science
, vol.304
, pp. 734-736
-
-
Pfeffer, S.1
Zavolan, M.2
Grässer, F.A.3
Chien, M.4
Russo, J.J.5
Ju, J.6
John, B.7
Enright, A.J.8
Marks, D.9
Sander, C.10
Tuschl, T.11
-
14
-
-
20844463414
-
Identification of microRNAs of the herpesvirus family
-
Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grässer FA, van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G, Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T. 2005. Identification of microRNAs of the herpesvirus family. Nat. Methods 2:269-276.
-
(2005)
Nat. Methods
, vol.2
, pp. 269-276
-
-
Pfeffer, S.1
Sewer, A.2
Lagos-Quintana, M.3
Sheridan, R.4
Sander, C.5
Grässer, F.A.6
van Dyk, L.F.7
Ho, C.K.8
Shuman, S.9
Chien, M.10
Russo, J.J.11
Ju, J.12
Randall, G.13
Lindenbach, B.D.14
Rice, C.M.15
Simon, V.16
Ho, D.D.17
Zavolan, M.18
Tuschl, T.19
-
15
-
-
17244375710
-
Kaposi's sarcoma-associated herpesvirus expresses an array of viral microRNAs in latently infected cells
-
Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR. 2005. Kaposi's sarcoma-associated herpesvirus expresses an array of viral microRNAs in latently infected cells. Proc. Natl. Acad. Sci. U. S. A. 102: 5570-5575.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A
, vol.102
, pp. 5570-5575
-
-
Cai, X.1
Lu, S.2
Zhang, Z.3
Gonzalez, C.M.4
Damania, B.5
Cullen, B.R.6
-
16
-
-
21644438873
-
Cloning and identification of a microRNA cluster within the latency-associated region of Kaposi's sarcoma-associated herpesvirus
-
Samols MA, Hu J, Skalsky RL, Renne R. 2005. Cloning and identification of a microRNA cluster within the latency-associated region of Kaposi's sarcoma-associated herpesvirus. J. Virol. 79:9301-9305.
-
(2005)
J. Virol
, vol.79
, pp. 9301-9305
-
-
Samols, M.A.1
Hu, J.2
Skalsky, R.L.3
Renne, R.4
-
17
-
-
84857097117
-
Small RNA deep sequencing identifies microRNAs and other small noncoding RNAs from human herpesvirus 6B
-
Tuddenham L, Jung JS, Chane-Woon-Ming B, Dölken L, Pfeffer S. 2012. Small RNA deep sequencing identifies microRNAs and other small noncoding RNAs from human herpesvirus 6B. J. Virol. 86:1638-1649.
-
(2012)
J. Virol
, vol.86
, pp. 1638-1649
-
-
Tuddenham, L.1
Jung, J.S.2
Chane-Woon-Ming, B.3
Dölken, L.4
Pfeffer, S.5
-
19
-
-
33744476400
-
Is RNA interference involved in intrinsic antiviral immunity in mammals? Nat
-
Cullen BR. 2006. Is RNA interference involved in intrinsic antiviral immunity in mammals? Nat. Immunol. 7:563-567.
-
(2006)
Immunol
, vol.7
, pp. 563-567
-
-
Cullen, B.R.1
-
20
-
-
78149316877
-
Noncanonical cytoplasmic processing of viral microRNAs
-
Shapiro JS, Varble A, Pham AM, tenOever BR. 2010. Noncanonical cytoplasmic processing of viral microRNAs. RNA 16:2068-2074.
-
(2010)
RNA
, vol.16
, pp. 2068-2074
-
-
Shapiro, J.S.1
Varble, A.2
Pham, A.M.3
Tenoever, B.R.4
-
21
-
-
84862587403
-
Evidence for a cytoplasmic microprocessor of pri-miRNAs
-
Shapiro JS, Langlois RA, Pham AM, tenOever BR. 2012. Evidence for a cytoplasmic microprocessor of pri-miRNAs. RNA 18:1338-1346.
-
(2012)
RNA
, vol.18
, pp. 1338-1346
-
-
Shapiro, J.S.1
Langlois, R.A.2
Pham, A.M.3
Tenoever, B.R.4
-
22
-
-
0001552353
-
Alphaviruses
-
In Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE (ed), 5th ed. Lippincott Williams & Wilkins, Philadelphia, PA
-
Griffin DE. 2007. Alphaviruses, p 1023-1068. In Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE (ed), Fields virology, 5th ed. Lippincott Williams & Wilkins, Philadelphia, PA.
-
(2007)
Fields Virology
, pp. 1023-1068
-
-
Griffin, D.E.1
-
23
-
-
84864122222
-
Evasion of the innate immune response: The Old World alphavirus nsP2 protein induces rapid degradation of Rpb1, a catalytic subunit of RNA polymerase II
-
Akhrymuk I, Kulemzin SV, Frolova EI. 2012. Evasion of the innate immune response: the Old World alphavirus nsP2 protein induces rapid degradation of Rpb1, a catalytic subunit of RNA polymerase II. J. Virol. 86:7180-7191.
-
(2012)
J. Virol
, vol.86
, pp. 7180-7191
-
-
Akhrymuk, I.1
Kulemzin, S.V.2
Frolova, E.I.3
-
24
-
-
0028088152
-
The alphaviruses: Gene expression, replication, and evolution
-
Strauss JH, Strauss EG. 1994. The alphaviruses: gene expression, replication, and evolution. Microbiol. Rev. 58:491-562.
-
(1994)
Microbiol. Rev
, vol.58
, pp. 491-562
-
-
Strauss, J.H.1
Strauss, E.G.2
-
25
-
-
70349199877
-
A structural and functional perspective of alphavirus replication and assembly
-
Jose J, Snyder JE, Kuhn RJ. 2009. A structural and functional perspective of alphavirus replication and assembly. Future Microbiol. 4:837-856.
-
(2009)
Future Microbiol
, vol.4
, pp. 837-856
-
-
Jose, J.1
Snyder, J.E.2
Kuhn, R.J.3
-
26
-
-
0014340574
-
Defectiveness of interferon production and of rubella virus interference in a line of African green monkey kidney cells (Vero)
-
Desmyter J, Melnick JL, Rawls WE. 1968. Defectiveness of interferon production and of rubella virus interference in a line of African green monkey kidney cells (Vero). J. Virol. 2:955-961.
-
(1968)
J. Virol
, vol.2
, pp. 955-961
-
-
Desmyter, J.1
Melnick, J.L.2
Rawls, W.E.3
-
27
-
-
84864913576
-
Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoR-NAs, snRNAs, and tRNAs
-
Li Z, Ender C, Meister G, Moore PS, Chang Y, John B. 2012. Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoR-NAs, snRNAs, and tRNAs. Nucleic Acids Res. 40:6787-6799.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 6787-6799
-
-
Li, Z.1
Ender, C.2
Meister, G.3
Moore, P.S.4
Chang, Y.5
John, B.6
-
28
-
-
0019794540
-
Interferon action: RNA cleavage pattern of a (2′-5′)oligoadenylate dependent endonuclease
-
Floyd-Smith G, Slattery E, Lengyel P. 1981. Interferon action: RNA cleavage pattern of a (2′-5′)oligoadenylate dependent endonuclease. Science 212:1030-1032.
-
(1981)
Science
, vol.212
, pp. 1030-1032
-
-
Floyd-Smith, G.1
Slattery, E.2
Lengyel, P.3
-
29
-
-
36849029340
-
Identification of virally encoded microRNAs
-
Pfeffer S. 2007. Identification of virally encoded microRNAs. Methods Enzymol. 427:51-63.
-
(2007)
Methods Enzymol
, vol.427
, pp. 51-63
-
-
Pfeffer, S.1
-
30
-
-
84867553154
-
Human RNA methyltransferase BCDIN3D regulates microRNA processing
-
Xhemalce B, Robson SC, Kouzarides T. 2012. Human RNA methyltransferase BCDIN3D regulates microRNA processing. Cell 151:278-288.
-
(2012)
Cell
, vol.151
, pp. 278-288
-
-
Xhemalce, B.1
Robson, S.C.2
Kouzarides, T.3
-
31
-
-
84863821425
-
Use of specific chemical reagents for detection of modified nucleotides in RNA
-
doi:10.4061/2011/408053
-
Behm-Ansmant I, Helm M, Motorin Y. 2011. Use of specific chemical reagents for detection of modified nucleotides in RNA. J. Nucleic Acids 2011:408053. doi:10.4061/2011/408053.
-
(2011)
J. Nucleic Acids
, vol.2011
, pp. 408053
-
-
Behm-Ansmant, I.1
Helm, M.2
Motorin, Y.3
-
32
-
-
0030771087
-
Small nucleolar RNAs direct sitespecific synthesis of pseudouridine in ribosomal RNA
-
Ni J, Tien AL, Fournier MJ. 1997. Small nucleolar RNAs direct sitespecific synthesis of pseudouridine in ribosomal RNA. Cell 89:565-573.
-
(1997)
Cell
, vol.89
, pp. 565-573
-
-
Ni, J.1
Tien, A.L.2
Fournier, M.J.3
-
33
-
-
12344275917
-
Biogenesis of small nuclear RNPs
-
Kiss T. 2004. Biogenesis of small nuclear RNPs. J. Cell Sci. 117: 5949-5951.
-
(2004)
J. Cell Sci
, vol.117
, pp. 5949-5951
-
-
Kiss, T.1
-
34
-
-
34247259831
-
Mouse Piwi-interacting RNAs are 2′-Omethylated at their 3′ termini
-
Kirino Y, Mourelatos Z. 2007. Mouse Piwi-interacting RNAs are 2′-Omethylated at their 3′ termini. Nat. Struct. Mol. Biol. 14:347-348.
-
(2007)
Nat. Struct. Mol. Biol
, vol.14
, pp. 347-348
-
-
Kirino, Y.1
Mourelatos, Z.2
-
35
-
-
34247199896
-
The 3′ termini of mouse Piwi-interacting RNAs are 2′-O-methylated
-
Ohara T, Sakaguchi Y, Suzuki T, Ueda H, Miyauchi K, Suzuki T. 2007. The 3′ termini of mouse Piwi-interacting RNAs are 2′-O-methylated. Nat. Struct. Mol. Biol. 14:349-350.
-
(2007)
Nat. Struct. Mol. Biol
, vol.14
, pp. 349-350
-
-
Ohara, T.1
Sakaguchi, Y.2
Suzuki, T.3
Ueda, H.4
Miyauchi, K.5
Suzuki, T.6
-
36
-
-
84861204560
-
2′-O methylation of internal adenosine by flavivirus NS5 methyltransferase
-
doi:10.1371/journal.ppat.1002642
-
Dong H, Chang DC, Hua MHC, Lim SP, Chionh YH, Hia F, Lee YH, Kukkaro P, Lok S-M, Dedon PC, Shi P-Y. 2012. 2′-O methylation of internal adenosine by flavivirus NS5 methyltransferase. PLoS Pathog. 8:e1002642. doi:10.1371/journal.ppat.1002642.
-
(2012)
PLoS Pathog
, vol.8
-
-
Dong, H.1
Chang, D.C.2
Hua, M.H.C.3
Lim, S.P.4
Chionh, Y.H.5
Hia, F.6
Lee, Y.H.7
Kukkaro, P.8
Lok, S.-M.9
Dedon, P.C.10
Shi, P.-Y.11
-
37
-
-
80055066817
-
Biochemical and structural insights into the mechanisms of SARS coronavirus RNA ribose 2′-O-methylation by nsp16/nsp10 protein complex
-
doi:10.1371/journal.ppat.1002294
-
Chen Y, Su C, Ke M, Jin X, Xu L, Zhang Z, Wu A, Sun Y, Yang Z, Tien P, Ahola T, Liang Y, Liu X, Guo D. 2011. Biochemical and structural insights into the mechanisms of SARS coronavirus RNA ribose 2′-O-methylation by nsp16/nsp10 protein complex. PLoS Pathog. 7:e1002294. doi:10.1371/journal.ppat.1002294.
-
(2011)
PLoS Pathog
, vol.7
-
-
Chen, Y.1
Su, C.2
Ke, M.3
Jin, X.4
Xu, L.5
Zhang, Z.6
Wu, A.7
Sun, Y.8
Yang, Z.9
Tien, P.10
Ahola, T.11
Liang, Y.12
Liu, X.13
Guo, D.14
-
38
-
-
84869025816
-
RTL-P: A sensitive approach for detecting sites of 2′-O-methylation in RNA molecules
-
Dong ZW, Shao P, Diao LT, Zhou H, Yu CH, Qu LH. 2012. RTL-P: a sensitive approach for detecting sites of 2′-O-methylation in RNA molecules. Nucleic Acids Res. 40:e157.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Dong, Z.W.1
Shao, P.2
Diao, L.T.3
Zhou, H.4
Yu, C.H.5
Qu, L.H.6
-
39
-
-
78649668009
-
Optimization of enzymatic reaction conditions for generating representative pools of cDNA from small RNA
-
Munafó DB, Robb GB. 2010. Optimization of enzymatic reaction conditions for generating representative pools of cDNA from small RNA. RNA 16:2537-2552.
-
(2010)
RNA
, vol.16
, pp. 2537-2552
-
-
Munafó, D.B.1
Robb, G.B.2
-
40
-
-
34748827433
-
Genetic analysis of resistance to viral infection
-
Beutler B, Eidenschenk C, Crozat K, Imler JL, Takeuchi O, Hoffmann JA, Akira S. 2007. Genetic analysis of resistance to viral infection. Nat. Rev. Immunol. 7:753-766.
-
(2007)
Nat. Rev. Immunol
, vol.7
, pp. 753-766
-
-
Beutler, B.1
Eidenschenk, C.2
Crozat, K.3
Imler, J.L.4
Takeuchi, O.5
Hoffmann, J.A.6
Akira, S.7
-
41
-
-
26944441255
-
Dicing and slicing: The core machinery of the RNA interference pathway
-
Hammond SM. 2005. Dicing and slicing: the core machinery of the RNA interference pathway. FEBS Lett. 579:5822-5829.
-
(2005)
FEBS Lett
, vol.579
, pp. 5822-5829
-
-
Hammond, S.M.1
-
42
-
-
84857468000
-
Production of virus-derived ping-pong-dependent piRNA-like small RNAs in the mosquito soma
-
doi:10.1371/ journal.ppat.1002470
-
Morazzani EM, Wiley MR, Murreddu MG, Adelman ZN, Myles KM. 2012. Production of virus-derived ping-pong-dependent piRNA-like small RNAs in the mosquito soma. PLoS Pathog. 8:e1002470. doi:10.1371/ journal.ppat.1002470.
-
(2012)
PLoS Pathog
, vol.8
-
-
Morazzani, E.M.1
Wiley, M.R.2
Murreddu, M.G.3
Adelman, Z.N.4
Myles, K.M.5
-
43
-
-
84856159552
-
Arbovirus-derived piRNAs exhibit a ping-pong signature in mosquito cells
-
doi:10.1371/journal.pone.0030861
-
Vodovar N, Bronkhorst AW, van Cleef KW, Miesen P, Blanc H, van Rij RP, Saleh MC. 2012. Arbovirus-derived piRNAs exhibit a ping-pong signature in mosquito cells. PLoS One 7:e30861. doi:10.1371/journal.pone.0030861.
-
(2012)
PLoS One
, vol.7
-
-
Vodovar, N.1
Bronkhorst, A.W.2
van Cleef, K.W.3
Miesen, P.4
Blanc, H.5
van Rij, R.P.6
Saleh, M.C.7
-
44
-
-
79952068189
-
Influenza A virus expresses high levels of an unusual class of small viral leader RNAs in infected cells
-
doi:10.1128/mBio.00204-10, e00204-10
-
Umbach JL, Yen HL, Poon LL, Cullen BR. 2010. Influenza A virus expresses high levels of an unusual class of small viral leader RNAs in infected cells. mBio 1(4):e00204-10. doi:10.1128/mBio.00204-10.
-
(2010)
MBio
, vol.1
, Issue.4
-
-
Umbach, J.L.1
Yen, H.L.2
Poon, L.L.3
Cullen, B.R.4
-
45
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
Friedländer MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N. 2008. Discovering microRNAs from deep sequencing data using miRDeep. Nat. Biotechnol. 26:407-415.
-
(2008)
Nat. Biotechnol
, vol.26
, pp. 407-415
-
-
Friedländer, M.R.1
Chen, W.2
Adamidi, C.3
Maaskola, J.4
Einspanier, R.5
Knespel, S.6
Rajewsky, N.7
-
46
-
-
84855293838
-
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
-
Friedländer MR, Mackowiak SD, Li N, Chen W, Rajewsky N. 2012. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res. 40:37-52.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 37-52
-
-
Friedländer, M.R.1
Mackowiak, S.D.2
Li, N.3
Chen, W.4
Rajewsky, N.5
-
47
-
-
67849114241
-
miRanalyzer: A microRNA detection and analysis tool for nextgeneration sequencing experiments
-
Hackenberg M, Sturm M, Langenberger D, Falcón-Pérez JM, Aransay AM. 2009. miRanalyzer: a microRNA detection and analysis tool for nextgeneration sequencing experiments. Nucleic Acids Res. 37:W68-W76.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Hackenberg, M.1
Sturm, M.2
Langenberger, D.3
Falcón-Pérez, J.M.4
Aransay, A.M.5
-
48
-
-
79959953839
-
miRanalyzer: An update on the detection and analysis of microRNAs in highthroughput sequencing experiments
-
Hackenberg M, Rodríguez-Ezpeleta N, Aransay AM. 2011. miRanalyzer: an update on the detection and analysis of microRNAs in highthroughput sequencing experiments. Nucleic Acids Res. 39:W132-W138.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Hackenberg, M.1
Rodríguez-Ezpeleta, N.2
Aransay, A.M.3
-
49
-
-
33644781716
-
RNase L plays a role in the antiviral response to West Nile virus
-
Scherbik SV, Paranjape JM, Stockman BM, Silverman RH, Brinton MA. 2006. RNase L plays a role in the antiviral response to West Nile virus. J. Virol. 80:2987-2999.
-
(2006)
J. Virol
, vol.80
, pp. 2987-2999
-
-
Scherbik, S.V.1
Paranjape, J.M.2
Stockman, B.M.3
Silverman, R.H.4
Brinton, M.A.5
-
50
-
-
78149324490
-
RNase L releases a small RNA from HCV RNA that refolds into a potent PAMP
-
Malathi K, Saito T, Crochet N, Barton DJ, Gale M, Silverman RH. 2010. RNase L releases a small RNA from HCV RNA that refolds into a potent PAMP. RNA 16:2108-2119.
-
(2010)
RNA
, vol.16
, pp. 2108-2119
-
-
Malathi, K.1
Saito, T.2
Crochet, N.3
Barton, D.J.4
Gale, M.5
Silverman, R.H.6
-
51
-
-
0037302340
-
Alphavirus minus-strand synthesis and persistence in mouse embryo fibroblasts derived from mice lacking RNase L and protein kinase R
-
Sawicki DL, Silverman RH, Williams BR, Sawicki SG. 2003. Alphavirus minus-strand synthesis and persistence in mouse embryo fibroblasts derived from mice lacking RNase L and protein kinase R. J. Virol. 77: 1801-1811.
-
(2003)
J. Virol
, vol.77
, pp. 1801-1811
-
-
Sawicki, D.L.1
Silverman, R.H.2
Williams, B.R.3
Sawicki, S.G.4
-
52
-
-
84862803181
-
Regulation of small RNA stability: Methylation and beyond
-
Ji L, Chen X. 2012. Regulation of small RNA stability: methylation and beyond. Cell Res. 22:624-636.
-
(2012)
Cell Res
, vol.22
, pp. 624-636
-
-
Ji, L.1
Chen, X.2
-
53
-
-
78549284909
-
2′-O methylation of the viral mRNA cap evades host restriction by IFIT family members
-
Daffis S, Szretter KJ, Schriewer J, Li J, Youn S, Errett J, Lin TY, Schneller S, Zust R, Dong H, Thiel V, Sen GC, Fensterl V, Klimstra WB, Pierson TC, Buller RM, Gale M, Shi PY, Diamond MS. 2010. 2′-O methylation of the viral mRNA cap evades host restriction by IFIT family members. Nature 468:452-456.
-
(2010)
Nature
, vol.468
, pp. 452-456
-
-
Daffis, S.1
Szretter, K.J.2
Schriewer, J.3
Li, J.4
Youn, S.5
Errett, J.6
Lin, T.Y.7
Schneller, S.8
Zust, R.9
Dong, H.10
Thiel, V.11
Sen, G.C.12
Fensterl, V.13
Klimstra, W.B.14
Pierson, T.C.15
Buller, R.M.16
Gale, M.17
Shi, P.Y.18
Diamond, M.S.19
-
54
-
-
39449097277
-
Overcoming the innate immune response to small interfering RNA
-
Judge A, MacLachlan I. 2008. Overcoming the innate immune response to small interfering RNA. Hum. Gene Ther. 19:111-124.
-
(2008)
Hum. Gene Ther
, vol.19
, pp. 111-124
-
-
Judge, A.1
Maclachlan, I.2
-
55
-
-
47749118026
-
Role for conserved residues of Sindbis virus nonstructural protein 2 methyltransferase-like domain in regulation of minus-strand synthesis and development of cytopathic infection
-
Mayuri, Geders TW, Smith JL, Kuhn RJ. 2008. Role for conserved residues of Sindbis virus nonstructural protein 2 methyltransferase-like domain in regulation of minus-strand synthesis and development of cytopathic infection. J. Virol. 82:7284-7297.
-
(2008)
J. Virol
, vol.82
, pp. 7284-7297
-
-
Mayuri, G.T.W.1
Smith, J.L.2
Kuhn, R.J.3
-
56
-
-
84866979410
-
Reducing ligation bias of small RNAs in libraries for next generation sequencing
-
Sorefan K, Pais H, Hall AE, Kozomara A, Griffiths-Jones S, Moulton V, Dalmay T. 2012. Reducing ligation bias of small RNAs in libraries for next generation sequencing. Silence 3:4.
-
(2012)
Silence
, vol.3
, pp. 4
-
-
Sorefan, K.1
Pais, H.2
Hall, A.E.3
Kozomara, A.4
Griffiths-Jones, S.5
Moulton, V.6
Dalmay, T.7
-
57
-
-
32644436065
-
Molecular characterization of geminivirus-derived small RNAs in different plant species
-
Akbergenov R, Si-Ammour A, Blevins T, Amin I, Kutter C, Vanderschuren H, Zhang P, Gruissem W, Meins F, Hohn T, Pooggin MM. 2006. Molecular characterization of geminivirus-derived small RNAs in different plant species. Nucleic Acids Res. 34:462-471.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 462-471
-
-
Akbergenov, R.1
Si-Ammour, A.2
Blevins, T.3
Amin, I.4
Kutter, C.5
Vanderschuren, H.6
Zhang, P.7
Gruissem, W.8
Meins, F.9
Hohn, T.10
Pooggin, M.M.11
-
58
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE. 2002. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 30:207-210.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
59
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31:3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|