-
1
-
-
31344442812
-
Theoretical models of selection and mutation on quantitative traits
-
Johnson T, Barton N (2005) Theoretical models of selection and mutation on quantitative traits. Philos Trans R Soc Lond B Biol Sci 360(1459):1411-1425.
-
(2005)
Philos Trans R Soc Lond B Biol Sci
, vol.360
, Issue.1459
, pp. 1411-1425
-
-
Johnson, T.1
Barton, N.2
-
2
-
-
0036245475
-
Understanding quantitative genetic variation
-
Barton NH, Keightley PD (2002) Understanding quantitative genetic variation. Nat Rev Genet 3(1):11-21.
-
(2002)
Nat Rev Genet
, vol.3
, Issue.1
, pp. 11-21
-
-
Barton, N.H.1
Keightley, P.D.2
-
3
-
-
79952171635
-
Positive and negative selection on noncoding DNA close to protein-coding genes in wild house mice
-
Kousathanas A, Oliver F, Halligan DL, Keightley PD (2011) Positive and negative selection on noncoding DNA close to protein-coding genes in wild house mice. Mol Biol Evol 28(3):1183-1191.
-
(2011)
Mol Biol Evol
, vol.28
, Issue.3
, pp. 1183-1191
-
-
Kousathanas, A.1
Oliver, F.2
Halligan, D.L.3
Keightley, P.D.4
-
4
-
-
84907587760
-
Evidence for widespread positive and negative selection in coding and conserved noncoding regions of Capsella grandiflora
-
Williamson RJ, et al. (2014) Evidence for widespread positive and negative selection in coding and conserved noncoding regions of Capsella grandiflora. PLoS Genet 10(9): e1004622.
-
(2014)
PLoS Genet
, vol.10
, Issue.9
, pp. e1004622
-
-
Williamson, R.J.1
-
5
-
-
79953673289
-
A genome-wide comparison of the functional properties of rare and common genetic variants in humans
-
Zhu Q, et al. (2011) A genome-wide comparison of the functional properties of rare and common genetic variants in humans. Am J Hum Genet 88(4):458-468.
-
(2011)
Am J Hum Genet
, vol.88
, Issue.4
, pp. 458-468
-
-
Zhu, Q.1
-
6
-
-
84902003260
-
Identifying the genes underlying quantitative traits: A rationale for the QTN programme
-
(0):plu004, 10.1093/aobpla/plu004
-
Lee YW, Gould BA, Stinchcombe JR (2014) Identifying the genes underlying quantitative traits: A rationale for the QTN programme. AoB Plants 6(0):plu004, 10.1093/aobpla/plu004.
-
(2014)
AoB Plants
, vol.6
-
-
Lee, Y.W.1
Gould, B.A.2
Stinchcombe, J.R.3
-
7
-
-
84881028642
-
An atlas of over 90, 000 conserved noncoding sequences provides insight into crucifer regulatory regions
-
Haudry A, et al. (2013) An atlas of over 90, 000 conserved noncoding sequences provides insight into crucifer regulatory regions. Nat Genet 45(8):891-898.
-
(2013)
Nat Genet
, vol.45
, Issue.8
, pp. 891-898
-
-
Haudry, A.1
-
8
-
-
13444306165
-
The landscape of genetic complexity across 5, 700 gene expression traits in yeast
-
Brem RB, Kruglyak L (2005) The landscape of genetic complexity across 5, 700 gene expression traits in yeast. Proc Natl Acad Sci USA 102(5):1572-1577.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.5
, pp. 1572-1577
-
-
Brem, R.B.1
Kruglyak, L.2
-
9
-
-
0037177625
-
Genetic dissection of transcriptional regulation in budding yeast
-
Brem RB, Yvert G, Clinton R, Kruglyak L (2002) Genetic dissection of transcriptional regulation in budding yeast. Science 296(5568):752-755.
-
(2002)
Science
, vol.296
, Issue.5568
, pp. 752-755
-
-
Brem, R.B.1
Yvert, G.2
Clinton, R.3
Kruglyak, L.4
-
10
-
-
77957942349
-
Selection at linked sites shapes heritable phenotypic variation in C. Elegans
-
Rockman MV, Skrovanek SS, Kruglyak L (2010) Selection at linked sites shapes heritable phenotypic variation in C. elegans. Science 330(6002):372-376.
-
(2010)
Science
, vol.330
, Issue.6002
, pp. 372-376
-
-
Rockman, M.V.1
Skrovanek, S.S.2
Kruglyak, L.3
-
11
-
-
40149096663
-
The evolution of gene expression QTL in Saccharomyces cerevisiae
-
Ronald J, Akey JM (2007) The evolution of gene expression QTL in Saccharomyces cerevisiae. PLoS One 2(7):e678.
-
(2007)
PLoS One
, vol.2
, Issue.7
, pp. e678
-
-
Ronald, J.1
Akey, J.M.2
-
12
-
-
84870693546
-
Genomic variation and its impact on gene expression in Drosophila melanogaster
-
Massouras A, et al. (2012) Genomic variation and its impact on gene expression in Drosophila melanogaster. PLoS Genet 8(11):e1003055.
-
(2012)
PLoS Genet
, vol.8
, Issue.11
, pp. e1003055
-
-
Massouras, A.1
-
13
-
-
77950460661
-
Understanding mechanisms underlying human gene expression variation with RNA sequencing
-
Pickrell JK, et al. (2010) Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature 464(7289):768-772.
-
(2010)
Nature
, vol.464
, Issue.7289
, pp. 768-772
-
-
Pickrell, J.K.1
-
14
-
-
84885645853
-
Transcriptome and genome sequencing uncovers functional variation in humans
-
Geuvadis Consortium
-
Lappalainen T, et al.; Geuvadis Consortium (2013) Transcriptome and genome sequencing uncovers functional variation in humans. Nature 501(7468):506-511.
-
(2013)
Nature
, vol.501
, Issue.7468
, pp. 506-511
-
-
Lappalainen, T.1
-
15
-
-
84891685308
-
Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals
-
Battle A, et al. (2014) Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals. Genome Res 24(1):14-24.
-
(2014)
Genome Res
, vol.24
, Issue.1
, pp. 14-24
-
-
Battle, A.1
-
16
-
-
84964699021
-
The genetic architecture of gene expression levels in wild baboons
-
10.7554/eLife.04729
-
Tung J, Zhou X, Alberts SC, Stephens M, Gilad Y (2015) The genetic architecture of gene expression levels in wild baboons. eLife 4, 10.7554/eLife.04729.
-
(2015)
ELife
, vol.4
-
-
Tung, J.1
Zhou, X.2
Alberts, S.C.3
Stephens, M.4
Gilad, Y.5
-
17
-
-
60149091864
-
Gene expression levels are a target of recent natural selection in the human genome
-
Kudaravalli S, Veyrieras J-B, Stranger BE, Dermitzakis ET, Pritchard JK (2009) Gene expression levels are a target of recent natural selection in the human genome. Mol Biol Evol 26(3):649-658.
-
(2009)
Mol Biol Evol
, vol.26
, Issue.3
, pp. 649-658
-
-
Kudaravalli, S.1
Veyrieras, J.-B.2
Stranger, B.E.3
Dermitzakis, E.T.4
Pritchard, J.K.5
-
18
-
-
80052731734
-
Epistatic selection between coding and regulatory variation in human evolution and disease
-
Lappalainen T, Montgomery SB, Nica AC, Dermitzakis ET (2011) Epistatic selection between coding and regulatory variation in human evolution and disease. Am J Hum Genet 89(3):459-463.
-
(2011)
Am J Hum Genet
, vol.89
, Issue.3
, pp. 459-463
-
-
Lappalainen, T.1
Montgomery, S.B.2
Nica, A.C.3
Dermitzakis, E.T.4
-
19
-
-
84880076219
-
Gene expression drives local adaptation in humans
-
Fraser HB (2013) Gene expression drives local adaptation in humans. Genome Res 23(7):1089-1096.
-
(2013)
Genome Res
, vol.23
, Issue.7
, pp. 1089-1096
-
-
Fraser, H.B.1
-
20
-
-
84892537003
-
Human expression QTLs are enriched in signals of environmental adaptation
-
Ye K, Lu J, Raj SM, Gu Z (2013) Human expression QTLs are enriched in signals of environmental adaptation. Genome Biol Evol 5(9):1689-1701.
-
(2013)
Genome Biol Evol
, vol.5
, Issue.9
, pp. 1689-1701
-
-
Ye, K.1
Lu, J.2
Raj, S.M.3
Gu, Z.4
-
21
-
-
37249073867
-
Gene expression quantitative trait locus analysis of 16 000 barley genes reveals a complex pattern of genome-wide transcriptional regulation
-
Potokina E, et al. (2008) Gene expression quantitative trait locus analysis of 16 000 barley genes reveals a complex pattern of genome-wide transcriptional regulation. Plant J 53(1):90-101.
-
(2008)
Plant J
, vol.53
, Issue.1
, pp. 90-101
-
-
Potokina, E.1
-
22
-
-
34249055193
-
Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis
-
West MAL, et al. (2007) Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis. Genetics 175(3):1441-1450.
-
(2007)
Genetics
, vol.175
, Issue.3
, pp. 1441-1450
-
-
Mal, W.1
-
23
-
-
84897458492
-
EQTL networks reveal complex genetic architecture in the immature soybean seed
-
Bolon Y-T, Hyten DL, Orf JH, Vance CP, Muehlbauer GJ (2014) eQTL networks reveal complex genetic architecture in the immature soybean seed. Plant Genome 7:1.
-
(2014)
Plant Genome
, vol.7
, pp. 1
-
-
Bolon, Y.-T.1
Hyten, D.L.2
Orf, J.H.3
Vance, C.P.4
Muehlbauer, G.J.5
-
24
-
-
80053132716
-
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
-
Gan X, et al. (2011) Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 477(7365):419-423.
-
(2011)
Nature
, vol.477
, Issue.7365
, pp. 419-423
-
-
Gan, X.1
-
25
-
-
79955556526
-
Genetic architecture of regulatory variation in Arabidopsis thaliana
-
Zhang X, Cal AJ, Borevitz JO (2011) Genetic architecture of regulatory variation in Arabidopsis thaliana. Genome Res 21(5):725-733.
-
(2011)
Genome Res
, vol.21
, Issue.5
, pp. 725-733
-
-
Zhang, X.1
Cal, A.J.2
Borevitz, J.O.3
-
26
-
-
84890685736
-
RNA sequencing reveals the complex regulatory network in the maize kernel
-
Fu J, et al. (2013) RNA sequencing reveals the complex regulatory network in the maize kernel. Nat Commun 4:2832.
-
(2013)
Nat Commun
, vol.4
, pp. 2832
-
-
Fu, J.1
-
27
-
-
77954966377
-
Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size
-
Slotte T, Foxe JP, Hazzouri KM, Wright SI (2010) Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size. Mol Biol Evol 27(8):1813-1821.
-
(2010)
Mol Biol Evol
, vol.27
, Issue.8
, pp. 1813-1821
-
-
Slotte, T.1
Foxe, J.P.2
Hazzouri, K.M.3
Wright, S.I.4
-
28
-
-
84902485214
-
FastSTRUCTURE: Variational inference of population structure in large SNP data sets
-
Raj A, Stephens M, Pritchard JK (2014) fastSTRUCTURE: Variational inference of population structure in large SNP data sets. Genetics 197(2):573-589.
-
(2014)
Genetics
, vol.197
, Issue.2
, pp. 573-589
-
-
Raj, A.1
Stephens, M.2
Pritchard, J.K.3
-
29
-
-
0015071523
-
Competitive bidding in high-risk situations
-
Available at
-
Capen EC, Clapp RV, Campbell WM (1971) Competitive bidding in high-risk situations. J Petroleum. Available at: https://www.onepetro.org/journal-paper/SPE-2993-PA.
-
(1971)
J Petroleum
-
-
Capen, E.C.1
Clapp, R.V.2
Campbell, W.M.3
-
30
-
-
0742288585
-
The complex interplay among factors that influence allelic association
-
Zondervan KT, Cardon LR (2004) The complex interplay among factors that influence allelic association. Nat Rev Genet 5(2):89-100.
-
(2004)
Nat Rev Genet
, vol.5
, Issue.2
, pp. 89-100
-
-
Zondervan, K.T.1
Cardon, L.R.2
-
31
-
-
80051669931
-
Contrasting demographic history and population structure in Capsella rubella and Capsella grandi-flora, two closely related species with different mating systems
-
St Onge KR, Källman T, Slotte T, Lascoux M, Palmé AE (2011) Contrasting demographic history and population structure in Capsella rubella and Capsella grandi-flora, two closely related species with different mating systems. Mol Ecol 20(16): 3306-3320.
-
(2011)
Mol Ecol
, vol.20
, Issue.16
, pp. 3306-3320
-
-
St Onge, K.R.1
Källman, T.2
Slotte, T.3
Lascoux, M.4
Palmé, A.E.5
-
32
-
-
84879686532
-
The Capsella rubella genome and the genomic consequences of rapid mating system evolution
-
Slotte T, et al. (2013) The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nat Genet 45(7):831-835.
-
(2013)
Nat Genet
, vol.45
, Issue.7
, pp. 831-835
-
-
Slotte, T.1
-
33
-
-
79956307251
-
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
-
Lunter G, Goodson M (2011) Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res 21(6):936-939.
-
(2011)
Genome Res
, vol.21
, Issue.6
, pp. 936-939
-
-
Lunter, G.1
Goodson, M.2
-
34
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna A, et al. (2010) The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20(9):1297-1303.
-
(2010)
Genome Res
, vol.20
, Issue.9
, pp. 1297-1303
-
-
McKenna, A.1
-
35
-
-
84896009017
-
From FastQ data to high-confidence variant calls: The Genome Analysis Toolkit best practices pipeline
-
Van der Auwera GA, et al. (2013) From FastQ data to high-confidence variant calls: the Genome Analysis Toolkit best practices pipeline. Curr Protoc Bioinformatics 11(1110):11.10.1-11.10.33.
-
(2013)
Curr Protoc Bioinformatics
, vol.11
, Issue.1110
, pp. 11101-111033
-
-
Van Der Auwera, G.A.1
-
36
-
-
84928987900
-
HTSeq-A Python framework to work with high-throughput sequencing data
-
Anders S, Pyl PT, Huber W (2015) HTSeq-A Python framework to work with high-throughput sequencing data. Bioinformatics 31(2):166-169.
-
(2015)
Bioinformatics
, vol.31
, Issue.2
, pp. 166-169
-
-
Anders, S.1
Pyl, P.T.2
Huber, W.3
-
37
-
-
34247500374
-
Python for scientific computing
-
Oliphant TE
-
Oliphant TE (2007) Python for scientific computing. Computing in Science & Engineering 9:10-20.
-
(2007)
Computing in Science & Engineering
, vol.9
, pp. 10-20
-
-
-
39
-
-
70349910898
-
Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data
-
Degner JF, et al. (2009) Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data. Bioinformatics 25(24):3207-3212.
-
(2009)
Bioinformatics
, vol.25
, Issue.24
, pp. 3207-3212
-
-
Degner, J.F.1
-
40
-
-
84929497425
-
Natural selection constrains neutral diversity across a wide range of species
-
Corbett-Detig RB, Hartl DL, Sackton TB (2015) Natural selection constrains neutral diversity across a wide range of species. PLoS Biol 13(4):e1002112.
-
(2015)
PLoS Biol
, vol.13
, Issue.4
, pp. e1002112
-
-
Corbett-Detig, R.B.1
Hartl, D.L.2
Sackton, T.B.3
|