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Volumn 10, Issue 6, 2016, Pages 1383-1399

Diversification and niche adaptations of Nitrospina-like bacteria in the polyextreme interfaces of Red Sea brines

Author keywords

[No Author keywords available]

Indexed keywords

ABUNDANCE; BACTERIUM; BRINE; DIVERGENCE; ENZYME ACTIVITY; GENOME; GENOMICS; GLOBAL OCEAN; GROWTH RATE; MARINE ENVIRONMENT; METABOLISM; MICROBIAL COMMUNITY; NITRITE; OSMOREGULATION; OXIDATION; POLYMER; SEAWATER;

EID: 84949571333     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2015.214     Document Type: Article
Times cited : (77)

References (83)
  • 1
    • 84987806326 scopus 로고    scopus 로고
    • Aerobic methanotrophic communities at the Red Sea brine-seawater interface
    • Abdallah RZ, Adel M, Ouf A, Sayed A, Ghazy MA, Alam I, et al. (2014). Aerobic methanotrophic communities at the Red Sea brine-seawater interface. Front Microbiol 5: 487-487
    • (2014) Front Microbiol , vol.5 , pp. 487
    • Abdallah, R.Z.1    Adel, M.2    Ouf, A.3    Sayed, A.4    Ghazy, M.A.5    Alam, I.6
  • 2
    • 84891953942 scopus 로고    scopus 로고
    • Indigo-integrated data warehouse of microbial genomes with examples from the red sea extremophiles
    • Alam I, Antunes A, Kamau AA, Alawi WB, Kalkatawi M, Stingl U, et al. (2013). INDIGO-INtegrated Data Warehouse of MIcrobial GenOmes with Examples from the Red Sea Extremophiles. PLoS One 8: e82210
    • (2013) PLoS One , vol.8 , pp. e82210
    • Alam, I.1    Antunes, A.2    Kamau, A.A.3    Alawi, W.B.4    Kalkatawi, M.5    Stingl, U.6
  • 3
    • 77954537064 scopus 로고    scopus 로고
    • Temperature influences the population structure of nitrite-oxidizing bacteria in activated sludge
    • Alawi M, Off S, Kaya M, Spieck E. (2009). Temperature influences the population structure of nitrite-oxidizing bacteria in activated sludge. Environ Microbiol Rep 1: 184-190
    • (2009) Environ Microbiol Rep , vol.1 , pp. 184-190
    • Alawi, M.1    Off, S.2    Kaya, M.3    Spieck, E.4
  • 4
    • 84872906004 scopus 로고    scopus 로고
    • Diversity and population structure of marine group a bacteria in the northeast subarctic pacific ocean
    • Allers E, Wright JJ, Konwar KM, Howes CG, Beneze E, Hallam SJ, et al. (2013). Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean. ISME J 7: 256-268
    • (2013) ISME J , vol.7 , pp. 256-268
    • Allers, E.1    Wright, J.J.2    Konwar, K.M.3    Howes, C.G.4    Beneze, E.5    Hallam, S.J.6
  • 5
    • 80054837085 scopus 로고    scopus 로고
    • Microbiology of the red sea (and other) deep-sea anoxic brine lakes
    • Antunes A, Ngugi DK, Stingl U. (2011). Microbiology of the Red Sea (and other) deep-sea anoxic brine lakes. Environ Microbiol Rep 3: 416-433
    • (2011) Environ Microbiol Rep , vol.3 , pp. 416-433
    • Antunes, A.1    Ngugi, D.K.2    Stingl, U.3
  • 6
  • 7
    • 84900344325 scopus 로고    scopus 로고
    • Deoxygenation alters bacterial diversity and community composition in the oceans largest oxygen minimum zone
    • Beman JM, Carolan MT. (2012). Deoxygenation alters bacterial diversity and community composition in the oceans largest oxygen minimum zone. Nat Commun 4: 2705-2705
    • (2012) Nat Commun , vol.4 , pp. 2705
    • Beman, J.M.1    Carolan, M.T.2
  • 8
    • 84886720409 scopus 로고    scopus 로고
    • Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical north pacific ocean
    • Beman JM, Leilei Shih J, Popp BN. (2013). Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical North Pacific Ocean. ISMEJ 7: 2192-2205
    • (2013) ISMEJ , vol.7 , pp. 2192-2205
    • Beman, J.M.1    Leilei Shih, J.2    Popp, B.N.3
  • 9
    • 0031559960 scopus 로고    scopus 로고
    • Generation of protonic potential by the bd-Type quinol oxidase of azotobacter vinelandii
    • Bertsova YV, Bogachev AV, Skulachev VP. (1997). Generation of protonic potential by the bd-Type quinol oxidase of Azotobacter vinelandii. FEBS Lett 414: 369-372
    • (1997) FEBS Lett , vol.414 , pp. 369-372
    • Bertsova, Y.V.1    Bogachev, A.V.2    Skulachev, V.P.3
  • 11
    • 0023964382 scopus 로고
    • Growth of Nitrobacter in the absence of dissolved oxygen
    • Bock E, Wilderer PA, Freitag A. (1987). Growth of Nitrobacter in the absence of dissolved oxygen. Water Res 22: 245-250
    • (1987) Water Res , vol.22 , pp. 245-250
    • Bock, E.1    Wilderer, P.A.2    Freitag, A.3
  • 12
    • 84877141015 scopus 로고    scopus 로고
    • Distinctive microbial community structure in highly stratified deep-sea brine water columns
    • Bougouffa S, Yang JK, Lee OO, Wang Y, Batang Z, Al-Suwailem A, et al. (2013). Distinctive microbial community structure in highly stratified deep-sea brine water columns. Appl Environ Microbiol 79: 3425-3437
    • (2013) Appl Environ Microbiol , vol.79 , pp. 3425-3437
    • Bougouffa, S.1    Yang, J.K.2    Lee, O.O.3    Wang, Y.4    Batang, Z.5    Al-Suwailem, A.6
  • 13
    • 0033764695 scopus 로고    scopus 로고
    • Life at the oxic-Anoxic interface: Microbial activities and adaptations
    • Brune A, Frenzel P, Cypionka H. (2000). Life at the oxic-Anoxic interface: microbial activities and adaptations. FEMS Microbiol Rev 24: 691-710
    • (2000) FEMS Microbiol Rev , vol.24 , pp. 691-710
    • Brune, A.1    Frenzel, P.2    Cypionka, H.3
  • 14
    • 84864223229 scopus 로고    scopus 로고
    • Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone
    • Bryant JA, Stewart FJ, Eppley JM, DeLong EF. (2012). Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone. Ecology 93: 1659-1673
    • (2012) Ecology , vol.93 , pp. 1659-1673
    • Bryant, J.A.1    Stewart, F.J.2    Eppley, J.M.3    DeLong, E.F.4
  • 16
    • 84921613578 scopus 로고    scopus 로고
    • Aquatic metagenomes implicate Thaumarchaeota in global cobalamin production
    • Doxey AC, Kurtz DA, Lynch MD, Sauder LA, Neufeld JD. (2014). Aquatic metagenomes implicate Thaumarchaeota in global cobalamin production. ISMEJ 9: 461-471
    • (2014) ISMEJ , vol.9 , pp. 461-471
    • Doxey, A.C.1    Kurtz, D.A.2    Lynch, M.D.3    Sauder, L.A.4    Neufeld, J.D.5
  • 17
    • 0029121005 scopus 로고
    • A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium, Nitrospira moscoviensis sp nov and its phylogenetic relationship
    • Ehrich S, Behrens D, Lebedeva E, Ludwig W, Bock E. (1995). A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium, Nitrospira moscoviensis sp nov and its phylogenetic relationship. Arch Microbiol 164: 16-23
    • (1995) Arch Microbiol , vol.164 , pp. 16-23
    • Ehrich, S.1    Behrens, D.2    Lebedeva, E.3    Ludwig, W.4    Bock, E.5
  • 18
    • 84903386153 scopus 로고    scopus 로고
    • Core microbial functional activities in ocean environments revealed by global metagenomic profiling analyses
    • Ferreira AJS, Siam R, Setubal JC, Moustafa A, Sayed A, Chambergo FS, et al. (2014). Core microbial functional activities in ocean environments revealed by global metagenomic profiling analyses. PLoS One 9: e97338
    • (2014) PLoS One , vol.9 , pp. e97338
    • Ferreira, A.J.S.1    Siam, R.2    Setubal, J.C.3    Moustafa, A.4    Sayed, A.5    Chambergo, F.S.6
  • 19
    • 0001349433 scopus 로고
    • Biochemical ecology of nitrification and denitrification
    • Alexander M (ed. Springer-Verlag: New York, NY, USA
    • Focht DD, Verstraete W. (1977). Biochemical ecology of nitrification and denitrification. In: Alexander M (ed), Advances in Microbial Ecology. Springer-Verlag: New York, NY, USA, pp 135-214
    • (1977) Advances in Microbial Ecology , pp. 135-214
    • Focht, D.D.1    Verstraete, W.2
  • 20
    • 34248681266 scopus 로고    scopus 로고
    • Maturation of [NiFe]-hydrogenases in Escherichia coli
    • Forzi L, Sawers RG. (2007). Maturation of [NiFe]-hydrogenases in Escherichia coli. Biometals 20: 565-578
    • (2007) Biometals , vol.20 , pp. 565-578
    • Forzi, L.1    Sawers, R.G.2
  • 21
    • 38249033095 scopus 로고
    • Growth of Nitrobacter by dissimilatoric nitrate reduction
    • Freitag A, Rudert M, Bock E. (1987). Growth of Nitrobacter by dissimilatoric nitrate reduction. FEMS Microbiol Lett 48: 105-109
    • (1987) FEMS Microbiol Lett , vol.48 , pp. 105-109
    • Freitag, A.1    Rudert, M.2    Bock, E.3
  • 22
    • 21244464827 scopus 로고    scopus 로고
    • Molecular identification of picoplankton populations in contrasting waters of the Arabian Sea
    • Fuchs BM, Woebken D, Zubkov MV, Burkill P, Amann R. (2005). Molecular identification of picoplankton populations in contrasting waters of the Arabian Sea. Aquat Microb Ecol 39: 145-157
    • (2005) Aquat Microb Ecol , vol.39 , pp. 145-157
    • Fuchs, B.M.1    Woebken, D.2    Zubkov, M.V.3    Burkill, P.4    Amann, R.5
  • 25
    • 84946482052 scopus 로고    scopus 로고
    • Diversity of methanogens and sulfate-reducing bacteria in the interfaces of five deep-sea anoxic brines of the Red Sea
    • Guan Y, Hikmawan T, Antunes A, Ngugi DK, Stingl U. (2015). Diversity of methanogens and sulfate-reducing bacteria in the interfaces of five deep-sea anoxic brines of the Red Sea. Res Microbiol 166: 688-699
    • (2015) Res Microbiol , vol.166 , pp. 688-699
    • Guan, Y.1    Hikmawan, T.2    Antunes, A.3    Ngugi, D.K.4    Stingl, U.5
  • 26
    • 48749128146 scopus 로고    scopus 로고
    • Abundant and diverse bacteria involved in DMSP degradation in marine surface waters
    • Howard EC, Sun S, Biers EJ, Moran MA. (2008). Abundant and diverse bacteria involved in DMSP degradation in marine surface waters. Environ Microbiol 10: 2397-2410
    • (2008) Environ Microbiol , vol.10 , pp. 2397-2410
    • Howard, E.C.1    Sun, S.2    Biers, E.J.3    Moran, M.A.4
  • 27
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz P, Goebel BM, Pace NR. (1998). Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180: 4765-4774
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 28
    • 0027444859 scopus 로고
    • Kinetics of Nitrobacter agilis at extreme substrate, product and salt concentrations
    • Hunik JH, Meijer H, Tramper J. (1993). Kinetics of Nitrobacter agilis at extreme substrate, product and salt concentrations. Appl Microbiol Biotechnol 40: 442-448
    • (1993) Appl Microbiol Biotechnol , vol.40 , pp. 442-448
    • Hunik, J.H.1    Meijer, H.2    Tramper, J.3
  • 29
    • 79953023347 scopus 로고    scopus 로고
    • Beyond the calvin cycle: Autotrophic carbon fixation in the ocean
    • Hügler M, Sievert SM. (2011). Beyond the Calvin Cycle: autotrophic carbon fixation in the ocean. Annu Rev Mar Sci 3: 261-289
    • (2011) Annu Rev Mar Sci , vol.3 , pp. 261-289
    • Hügler, M.1    Sievert, S.M.2
  • 31
    • 84941249187 scopus 로고    scopus 로고
    • Expanded metabolic versatility of ubiquitous nitrite-oxidzing bacteria from the genus Nitrospira
    • Koch H, Lücker S, Albertsen M, Kitzinger K, Herbold C, Spieck E, et al. (2015). Expanded metabolic versatility of ubiquitous nitrite-oxidzing bacteria from the genus Nitrospira. Proc Natl Acad Sci USA 112: 11371-11376
    • (2015) Proc Natl Acad Sci USA , vol.112 , pp. 11371-11376
    • Koch, H.1    Lücker, S.2    Albertsen, M.3    Kitzinger, K.4    Herbold, C.5    Spieck, E.6
  • 32
    • 53849115701 scopus 로고    scopus 로고
    • Genomic patterns of recombination, clonal divergence and environment in marine microbial populations
    • Konstantinidis KT, DeLong EF. (2008). Genomic patterns of recombination, clonal divergence and environment in marine microbial populations. ISME J 2: 1052-1065
    • (2008) ISME J , vol.2 , pp. 1052-1065
    • Konstantinidis, K.T.1    DeLong, E.F.2
  • 33
    • 35748954014 scopus 로고    scopus 로고
    • Prokaryotic taxonomy and phylogeny in the genomic era: Advancements and challenges ahead
    • Konstantinidis KT, Tiedje JM. (2007). Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Curr Opin in Microbiol 10: 504-509
    • (2007) Curr Opin in Microbiol , vol.10 , pp. 504-509
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 34
    • 84864394611 scopus 로고    scopus 로고
    • Genomic sequencing of uncultured microorganisms from single cells
    • Lasken RS. (2012). Genomic sequencing of uncultured microorganisms from single cells. Nat Rev Microbiol 10: 631-640
    • (2012) Nat Rev Microbiol , vol.10 , pp. 631-640
    • Lasken, R.S.1
  • 35
    • 78650789187 scopus 로고    scopus 로고
    • Isolation and characterization of a moderately thermophilic nitrite-oxidizing bacterium from a geothermal spring
    • Lebedeva EV, Off S, Zumbrägel S, Kruse M, Shagzhina A, Lücker S, et al. (2010). Isolation and characterization of a moderately thermophilic nitrite-oxidizing bacterium from a geothermal spring. FEMS Microbiol Ecol 75: 195-204
    • (2010) FEMS Microbiol Ecol , vol.75 , pp. 195-204
    • Lebedeva, E.V.1    Off, S.2    Zumbrägel, S.3    Kruse, M.4    Shagzhina, A.5    Lücker, S.6
  • 36
    • 84913530376 scopus 로고    scopus 로고
    • Nitrospinalike bacteria are the main drivers of nitrite oxidation in the seasonal upwelling area of the eastern south pacific (central Chile ? 36°s
    • Levipan HA, Molina V, Fernandez C. (2014). Nitrospinalike bacteria are the main drivers of nitrite oxidation in the seasonal upwelling area of the Eastern South Pacific (Central Chile ? 36°S). Environ Microbiol Rep 6: 565-573
    • (2014) Environ Microbiol Rep , vol.6 , pp. 565-573
    • Levipan, H.A.1    Molina, V.2    Fernandez, C.3
  • 37
    • 84930246053 scopus 로고    scopus 로고
    • The family nitrospinaceae
    • Rosenberg E, DeLong EF, Lory S, Stackebrandt E, Thompson F. (eds. Springer-Verlag: Berlin, Germany
    • Lücker S, Daims H. (2014). The Family Nitrospinaceae. In: Rosenberg E, DeLong EF, Lory S, Stackebrandt E, Thompson F. (eds), The Prokaryotes: Deltaproteobacteria and Epsilonproteobacteria, vol. XIX. Springer-Verlag: Berlin, Germany, pp 231-237
    • (2014) The Prokaryotes: Deltaproteobacteria and Epsilonproteobacteria , vol.21 , pp. 231-237
    • Lücker, S.1    Daims, H.2
  • 38
    • 84875875462 scopus 로고    scopus 로고
    • The genome of Nitrospina gracilis illuminates the metabolism and evolution of the major marine nitrite oxidizer
    • Lücker S, Nowka B, Rattei T, Spieck E, Daims H. (2013). The genome of Nitrospina gracilis illuminates the metabolism and evolution of the major marine nitrite oxidizer. Front Microbiol 4: 27
    • (2013) Front Microbiol , vol.4 , pp. 27
    • Lücker, S.1    Nowka, B.2    Rattei, T.3    Spieck, E.4    Daims, H.5
  • 39
    • 77955791222 scopus 로고    scopus 로고
    • A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria
    • Lücker S, Wagner M, Maixner F, Pelletier E, Koch H, Vacherie B, et al. (2010). A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria. Proc Natl Acad Sci USA 107: 13479-13484
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 13479-13484
    • Lücker, S.1    Wagner, M.2    Maixner, F.3    Pelletier, E.4    Koch, H.5    Vacherie, B.6
  • 40
    • 33745791511 scopus 로고    scopus 로고
    • Nitrite concentration influences the population structure of Nitrospira-like bacteria
    • Maixner F, Noguera DR, Anneser B, Stoecker K, Wegl G, Wagner M, et al. (2006). Nitrite concentration influences the population structure of Nitrospira-like bacteria. Environ Microbiol 8: 1487-1495
    • (2006) Environ Microbiol , vol.8 , pp. 1487-1495
    • Maixner, F.1    Noguera, D.R.2    Anneser, B.3    Stoecker, K.4    Wegl, G.5    Wagner, M.6
  • 42
    • 0026643151 scopus 로고
    • Nitrite oxidoreductase from Nitrobacter hamburgensis: Redox centers and their catalytic role
    • Meincke M, Bock E, Kastrau D, Kroneck P. (1992). Nitrite oxidoreductase from Nitrobacter hamburgensis: redox centers and their catalytic role. Arch Microbiol 158: 127-131
    • (1992) Arch Microbiol , vol.158 , pp. 127-131
    • Meincke, M.1    Bock, E.2    Kastrau, D.3    Kroneck, P.4
  • 43
    • 34247847886 scopus 로고    scopus 로고
    • Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre
    • Mincer TJ, Church MJ, Taylor LT, Preston C, Karl DM, DeLong EF. (2007). Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environ Microbiol 9: 1162-1175
    • (2007) Environ Microbiol , vol.9 , pp. 1162-1175
    • Mincer, T.J.1    Church, M.J.2    Taylor, L.T.3    Preston, C.4    Karl, D.M.5    DeLong, E.F.6
  • 45
    • 84921612289 scopus 로고    scopus 로고
    • Comparative genomics reveals adaptations of a halotolerant thaumarchaeon in the interfaces of brine pools in the Red Sea
    • Ngugi DK, Blom J, Alam I, Rashid M, Ba-Alawi W, Zhang G, et al. (2015). Comparative genomics reveals adaptations of a halotolerant thaumarchaeon in the interfaces of brine pools in the Red Sea. ISME J 9: 396-411
    • (2015) ISME J , vol.9 , pp. 396-411
    • Ngugi, D.K.1    Blom, J.2    Alam, I.3    Rashid, M.4    Ba-Alawi, W.5    Zhang, G.6
  • 46
    • 84869756836 scopus 로고    scopus 로고
    • Combined analyses of the ITS loci and the corresponding 16S rRNA genes reveal high micro-And macrodiversity of SAR11 populations in the Red Sea
    • Ngugi DK, Stingl U. (2012). Combined analyses of the ITS loci and the corresponding 16S rRNA genes reveal high micro-And macrodiversity of SAR11 populations in the Red Sea. PLoS One 7: e50274
    • (2012) PLoS One , vol.7 , pp. e50274
    • Ngugi, D.K.1    Stingl, U.2
  • 47
    • 84920719019 scopus 로고    scopus 로고
    • Comparison of oxidation kinetics of nitrite-oxidizing bacteria: Nitrite availability as a key factor in niche differentiation
    • Nowka B, Daims H, Spieck E. (2015). Comparison of oxidation kinetics of nitrite-oxidizing bacteria: nitrite availability as a key factor in niche differentiation. Appl Environ Microbiol 81: 745-753
    • (2015) Appl Environ Microbiol , vol.81 , pp. 745-753
    • Nowka, B.1    Daims, H.2    Spieck, E.3
  • 48
    • 84925276427 scopus 로고    scopus 로고
    • Hadal biosphere: Insight into the microbial ecosystem in the deepest ocean on Earth
    • Nunoura T, Takaki Y, Hirai M, Shimamura S, Makabe A, Koide O, et al. (2015). Hadal biosphere: insight into the microbial ecosystem in the deepest ocean on Earth. Proc Natl Acad Sci USA 112: E1230-E1236
    • (2015) Proc Natl Acad Sci USA , vol.112 , pp. E1230-E1236
    • Nunoura, T.1    Takaki, Y.2    Hirai, M.3    Shimamura, S.4    Makabe, A.5    Koide, O.6
  • 49
    • 0033022073 scopus 로고    scopus 로고
    • Bioenergetic aspects of halophilism
    • Oren A. (1999). Bioenergetic aspects of halophilism. Microbiol Mol Biol Rev 63: 334-348
    • (1999) Microbiol Mol Biol Rev , vol.63 , pp. 334-348
    • Oren, A.1
  • 50
    • 79952209867 scopus 로고    scopus 로고
    • Thermodynamic limits to microbial life at high salt concentrations
    • Oren A. (2011). Thermodynamic limits to microbial life at high salt concentrations. Environ Microbiol 13: 1908-1923
    • (2011) Environ Microbiol , vol.13 , pp. 1908-1923
    • Oren, A.1
  • 51
    • 0028534837 scopus 로고
    • Molecular physiology of the Na+/H+ antiporter in Escherichia coli
    • Padan E, Schuldiner S. (1994). Molecular physiology of the Na+/H+ antiporter in Escherichia coli. Exp Biol 196: 443-456
    • (1994) Exp Biol , vol.196 , pp. 443-456
    • Padan, E.1    Schuldiner, S.2
  • 52
    • 84937040910 scopus 로고    scopus 로고
    • CheckM: Assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
    • Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. (2015). CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res 25: 1043-1055
    • (2015) Genome Res , vol.25 , pp. 1043-1055
    • Parks, D.H.1    Imelfort, M.2    Skennerton, C.T.3    Hugenholtz, P.4    Tyson, G.W.5
  • 53
    • 0035371783 scopus 로고    scopus 로고
    • A novel scenario for the evolution of haem-copper oxygen reductases
    • Pereira MM, Santana M, Teixeira M. (2001). A novel scenario for the evolution of haem-copper oxygen reductases. Biochim Biophys Acta 1505: 185-208
    • (2001) Biochim Biophys Acta , vol.1505 , pp. 185-208
    • Pereira, M.M.1    Santana, M.2    Teixeira, M.3
  • 54
    • 79951813933 scopus 로고    scopus 로고
    • Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing
    • Qian P-Y, Wang Y, Lee OO, Lau SCK, Yang J, Lafi FF, et al. (2011). Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing. ISME J 5: 507-518
    • (2011) ISME J , vol.5 , pp. 507-518
    • Qian, P.-Y.1    Wang, Y.2    Lee, O.O.3    Lau, S.C.K.4    Yang, J.5    Lafi, F.F.6
  • 55
    • 0034201441 scopus 로고    scopus 로고
    • Emboss: The european molecular biology open software suite
    • Rice P, Longden I, Bleasby A. (2000). EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 56
    • 78650777550 scopus 로고    scopus 로고
    • Time-series analyses of Monterey Bay coastal microbial picoplankton using a genome proxy microarray
    • Rich VI, Pham VD, Eppley J, Shi Y, DeLong EF. (2011). Time-series analyses of Monterey Bay coastal microbial picoplankton using a genome proxy microarray. Environ Microbiol 13: 116-134
    • (2011) Environ Microbiol , vol.13 , pp. 116-134
    • Rich, V.I.1    Pham, V.D.2    Eppley, J.3    Shi, Y.4    DeLong, E.F.5
  • 57
    • 73149098333 scopus 로고    scopus 로고
    • Shifting the genomic gold standard for the prokaryotic species definition
    • Richter M, Rosselló-Móra R. (2009). Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 106: 19126-19131
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 19126-19131
    • Richter, M.1    Rosselló-Móra, R.2
  • 58
    • 84899507119 scopus 로고    scopus 로고
    • Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics
    • Rinke C, Lee J, Nath N, Goudeau D, Thompson B, Poulton N, et al. (2014). Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics. Nat Protoc 9: 1038-1048
    • (2014) Nat Protoc , vol.9 , pp. 1038-1048
    • Rinke, C.1    Lee, J.2    Nath, N.3    Goudeau, D.4    Thompson, B.5    Poulton, N.6
  • 60
    • 33947238287 scopus 로고    scopus 로고
    • The sorcerer II global ocean sampling expedition: Northwest atlantic through eastern tropical pacific
    • Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S, et al. (2007). The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific. PLoS Biol 5: e77
    • (2007) PLoS Biol , vol.5 , pp. e77
    • Rusch, D.B.1    Halpern, A.L.2    Sutton, G.3    Heidelberg, K.B.4    Williamson, S.5    Yooseph, S.6
  • 61
    • 78049432317 scopus 로고    scopus 로고
    • Activity, abundance and diversity of nitrifying archaea and bacteria in the central California current
    • Santoro AE, Casciotti KL, Francis CA. (2010). Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current. Environ Microbiol 12: 1989-2006
    • (2010) Environ Microbiol , vol.12 , pp. 1989-2006
    • Santoro, A.E.1    Casciotti, K.L.2    Francis, C.A.3
  • 63
    • 0032812283 scopus 로고    scopus 로고
    • Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp along a macroscale gradient in a nitrifying bioreactor: Quantification by in situ hybridization and the use of microsensors
    • Schramm AA, de Beer DD, van den Heuvel JCJ, Ottengraf SS, Amann RR. (1999). Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp along a macroscale gradient in a nitrifying bioreactor: quantification by in situ hybridization and the use of microsensors. Appl Environ Microbiol 65: 3690-3696
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3690-3696
    • Schramm, A.A.1    De Beer, D.D.2    Van Den Heuvel, J.C.J.3    Ottengraf, S.S.4    Amann, R.R.5
  • 64
    • 0014262667 scopus 로고
    • Acetate assimilation by Nitrobacter agilis in relation to its obligate autotrophy
    • Smith AJ, Hoare DS. (1968). Acetate assimilation by Nitrobacter agilis in relation to its obligate autotrophy. J Bacteriol 95: 844-855
    • (1968) J Bacteriol , vol.95 , pp. 844-855
    • Smith, A.J.1    Hoare, D.S.2
  • 65
    • 84871326069 scopus 로고    scopus 로고
    • Nitrification expanded: Discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi
    • Sorokin DY, Lücker S, Vejmelkova D, Kostrikina NA, Kleerebezem R, Rijpstra WIC, et al. (2012). Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi. ISME J 6: 2245-2256
    • (2012) ISME J , vol.6 , pp. 2245-2256
    • Sorokin, D.Y.1    Lücker, S.2    Vejmelkova, D.3    Kostrikina, N.A.4    Kleerebezem, R.5    Rijpstra, W.I.C.6
  • 66
    • 34547339831 scopus 로고    scopus 로고
    • The lithoautotrophic nitrite-oxidizing bacteria
    • Brenner DJ, Krieg NR, Staley JT, Garrity GM (eds. Springer-Verlag: New York, NY, USA
    • Spieck E, Bock E. (2005). The lithoautotrophic nitrite-oxidizing bacteria. In: Brenner DJ, Krieg NR, Staley JT, Garrity GM (eds), Bergeys Manual of Systematic Bacteriology. Springer-Verlag: New York, NY, USA, pp 149-153
    • (2005) Bergeys Manual of Systematic Bacteriology , pp. 149-153
    • Spieck, E.1    Bock, E.2
  • 67
    • 84899480879 scopus 로고    scopus 로고
    • Characterization of a new marine nitrite-oxidizing bacterium Nitrospina watsonii sp nov, a member of the newly proposed phylum Nitrospinae
    • Spieck E, Keuter S, Wenzel T, Bock E, Ludwig W. (2014). Characterization of a new marine nitrite-oxidizing bacterium, Nitrospina watsonii sp nov, a member of the newly proposed phylum Nitrospinae. Syst Appl Microbiol 37: 170-176
    • (2014) Syst Appl Microbiol , vol.37 , pp. 170-176
    • Spieck, E.1    Keuter, S.2    Wenzel, T.3    Bock, E.4    Ludwig, W.5
  • 68
    • 78650926330 scopus 로고    scopus 로고
    • Cultivation, growth physiology, and chemotaxonomy of nitrite-oxidizing bacteria
    • Spieck E, Lipski A. (2011). Cultivation, growth physiology, and chemotaxonomy of nitrite-oxidizing bacteria. Meth Enzymol 486: 109-130
    • (2011) Meth Enzymol , vol.486 , pp. 109-130
    • Spieck, E.1    Lipski, A.2
  • 70
    • 43049151065 scopus 로고    scopus 로고
    • Complete genome sequence of Nitrobacter hamburgensis X14 and comparative genomic analysis of species within the genus Nitrobacter
    • Starkenburg SR, Larimer FW, Stein LY, Klotz MG, Chain PSG, Sayavedra-Soto LA, et al. (2008). Complete genome sequence of Nitrobacter hamburgensis X14 and comparative genomic analysis of species within the genus Nitrobacter. Appl Environ Microbiol 74: 2852-2863
    • (2008) Appl Environ Microbiol , vol.74 , pp. 2852-2863
    • Starkenburg, S.R.1    Larimer, F.W.2    Stein, L.Y.3    Klotz, M.G.4    Chain, P.S.G.5    Sayavedra-Soto, L.A.6
  • 71
    • 84868098266 scopus 로고    scopus 로고
    • Single cell genomics: An individual look at microbes
    • Stepanauskas R. (2012). Single cell genomics: an individual look at microbes. Curr Opin Microbiol 15: 613-620
    • (2012) Curr Opin Microbiol , vol.15 , pp. 613-620
    • Stepanauskas, R.1
  • 72
    • 79953112264 scopus 로고    scopus 로고
    • Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities
    • Stewart FJ, Sharma AK, Bryant JA, Eppley JM, DeLong EF. (2011). Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities. Genome Biol 12: R26
    • (2011) Genome Biol , vol.12 , pp. R26
    • Stewart, F.J.1    Sharma, A.K.2    Bryant, J.A.3    Eppley, J.M.4    DeLong, E.F.5
  • 73
    • 80052479893 scopus 로고    scopus 로고
    • Potential for chemolithoautotrophy among ubiquitous Bacteria lineages in the dark ocean
    • Swan BK, Martinez-Garcia M, Preston CM, Sczyrba A, Woyke T, LAMY D, et al. (2011). Potential for chemolithoautotrophy among ubiquitous Bacteria lineages in the dark ocean. Science 333: 1296-1300
    • (2011) Science , vol.333 , pp. 1296-1300
    • Swan, B.K.1    Martinez-Garcia, M.2    Preston, C.M.3    Sczyrba, A.4    Woyke, T.5    Lamy, D.6
  • 74
    • 0036229440 scopus 로고    scopus 로고
    • Role of rubrerythrin in the oxidative stress response of Porphyromonas gingivalis
    • Sztukowska M, Bugno M, Potempa J, Travis J, Kurtz DM. (2002). Role of rubrerythrin in the oxidative stress response of Porphyromonas gingivalis. Mol Microbiol 44: 479-488
    • (2002) Mol Microbiol , vol.44 , pp. 479-488
    • Sztukowska, M.1    Bugno, M.2    Potempa, J.3    Travis, J.4    Kurtz, D.M.5
  • 75
    • 84870882427 scopus 로고    scopus 로고
    • Evaluation method for the potential functionome harbored in the genome and metagenome
    • Takami H, Taniguchi T, Moriya Y, Kuwahara T, Kanehisa M, Goto S. (2012). Evaluation method for the potential functionome harbored in the genome and metagenome. BMC Genomics 13: 699
    • (2012) BMC Genomics , vol.13 , pp. 699
    • Takami, H.1    Taniguchi, T.2    Moriya, Y.3    Kuwahara, T.4    Kanehisa, M.5    Goto, S.6
  • 76
    • 84899693885 scopus 로고    scopus 로고
    • Glass-forming property of hydroxyectoine is the cause of its superior function as a desiccation protectant
    • Tanne C, Golovina EA, Hoekstra FA, Meffert A, Galinski EA. (2014). Glass-forming property of hydroxyectoine is the cause of its superior function as a desiccation protectant. Front Microbiol 5: 150
    • (2014) Front Microbiol , vol.5 , pp. 150
    • Tanne, C.1    Golovina, E.A.2    Hoekstra, F.A.3    Meffert, A.4    Galinski, E.A.5
  • 78
    • 0000301525 scopus 로고
    • Characteristics of two marine nitrite-oxidizing bacteria, Nitrospina gracilis nov. Gen nov sp. And Nitrococcus mobilis nov gen nov sp
    • Watson SW, Waterbury JB. (1971). Characteristics of two marine nitrite-oxidizing bacteria, Nitrospina gracilis nov. gen nov sp. and Nitrococcus mobilis nov. gen nov sp. Archiv Mikrobiol 77: 203-230
    • (1971) Archiv Mikrobiol , vol.77 , pp. 203-230
    • Watson, S.W.1    Waterbury, J.B.2
  • 79
    • 84892979863 scopus 로고    scopus 로고
    • Genomic properties of marine group a bacteria indicate a role in the marine sulfur cycle
    • Wright JJ, Mewis K, Hanson NW, Konwar KM, Maas KR, Hallam SJ. (2013). Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle. ISME J 8: 455-468
    • (2013) ISME J , vol.8 , pp. 455-468
    • Wright, J.J.1    Mewis, K.2    Hanson, N.W.3    Konwar, K.M.4    Maas, K.R.5    Hallam, S.J.6
  • 80
    • 33947369531 scopus 로고    scopus 로고
    • Glutamate 107 in subunit i of the cytochrome bd quinol oxidase from Escherichia coli is protonated and near the heme d/heme b595 binuclear center
    • Yang K, Zhang J, Vakkasoglu AS, Hielscher R, Osborne JP, Hemp J, et al. (2007). Glutamate 107 in subunit I of the cytochrome bd quinol oxidase from Escherichia coli is protonated and near the heme d/heme b595 binuclear center. Biochemistry 46: 3270-3278
    • (2007) Biochemistry , vol.46 , pp. 3270-3278
    • Yang, K.1    Zhang, J.2    Vakkasoglu, A.S.3    Hielscher, R.4    Osborne, J.P.5    Hemp, J.6
  • 81
    • 80055092787 scopus 로고    scopus 로고
    • A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes
    • Yelton AP, Thomas BC, Simmons SL, Wilmes P, Zemla A, Thelen MP, et al. (2011). A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes. PLoS Comput Biol 7: e1002230
    • (2011) PLoS Comput Biol , vol.7 , pp. e1002230
    • Yelton, A.P.1    Thomas, B.C.2    Simmons, S.L.3    Wilmes, P.4    Zemla, A.5    Thelen, M.P.6
  • 82
    • 78649707158 scopus 로고    scopus 로고
    • Multiple displacement amplification compromises quantitative analysis of metagenomes
    • Yilmaz S, Allgaier M, Hugenholtz P. (2010). Multiple displacement amplification compromises quantitative analysis of metagenomes. Nat Methods 7: 943-944
    • (2010) Nat Methods , vol.7 , pp. 943-944
    • Yilmaz, S.1    Allgaier, M.2    Hugenholtz, P.3


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