-
1
-
-
84868130695
-
Role for urea in nitrification by polar marine archaea
-
Alonso-Sáez L, Waller AS, Mende DR, Bakker K, Farnelid H, Yager PL et al. (2012). Role for urea in nitrification by polar marine Archaea. Proc Natl Acad Sci USA 109: 17989-17994.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 17989-17994
-
-
Alonso-Sáez, L.1
Waller, A.S.2
Mende, D.R.3
Bakker, K.4
Farnelid, H.5
Yager, P.L.6
-
2
-
-
0032853568
-
Hydrographic changes during 20 years in the brine-filled basins of the red sea
-
Anschutz P, Blanc G, Chatin F, Geiller M, Pierret M-C. ( 1999). Hydrographic changes during 20 years in the brine-filled basins of the Red Sea. Deep Sea Res Part IOceanogr Res Pap 46: 1779-1792.
-
(1999)
Deep Sea Res Part IOceanogr Res Pap
, vol.46
, pp. 1779-1792
-
-
Anschutz, P.1
Blanc, G.2
Chatin, F.3
Geiller, M.4
Pierret, M.-C.5
-
3
-
-
80054837085
-
Microbiology of the red sea (and other) deep-sea anoxic brine lakes
-
Antunes A, Ngugi DK, Stingl U. (2011). Microbiology of the Red Sea (and other) deep-sea anoxic brine lakes. Environ Microbiol Rep 3: 416-433.
-
(2011)
Environ Microbiol Rep
, vol.3
, pp. 416-433
-
-
Antunes, A.1
Ngugi, D.K.2
Stingl, U.3
-
4
-
-
37249052742
-
A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in archaea
-
Berg IA, Kockelkorn D, Buckel W, Fuchs G. (2007). A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea. Science 318: 1782-1786.
-
(2007)
Science
, vol.318
, pp. 1782-1786
-
-
Berg, I.A.1
Kockelkorn, D.2
Buckel, W.3
Fuchs, G.4
-
5
-
-
23944433934
-
Loss of diversity of ammonia-oxidizing bacteria correlates with increasing salinity in an estuary system
-
Bernhard AE, Donn T, Giblin AE, Stahl DA. (2005). Loss of diversity of ammonia-oxidizing bacteria correlates with increasing salinity in an estuary system. Environ Microbiol 7: 1289-1297.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1289-1297
-
-
Bernhard, A.E.1
Donn, T.2
Giblin, A.E.3
Stahl, D.A.4
-
6
-
-
84874550637
-
Global biodiversity of aquatic ammonia-oxidizing archaea is partitioned by habitat
-
Bille r SJ, Mosier AC, Wells GF, Francis CA. (2012). Global biodiversity of aquatic ammonia-oxidizing archaea is partitioned by habitat. Front Microbiol 3: 252.
-
(2012)
Front Microbiol
, vol.3
, pp. 252
-
-
Biller, S.J.1
Mosier, A.C.2
Wells, G.F.3
Francis, C.A.4
-
7
-
-
79952050667
-
Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis
-
Blainey PC, Mosier AC, Potanina A, Fran cis CA, Quake SR. (2011). Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLoS One 6: e16626.
-
(2011)
PLoS One
, vol.6
, pp. e16626
-
-
Blainey, P.C.1
Mosier, A.C.2
Potanina, A.3
Fran Cis, C.A.4
Quake, S.R.5
-
8
-
-
67649159262
-
Edgar: A software framework for the comparative analysis of prokaryotic genomes
-
Blom J, Albaum SP, Doppmeier D, Pühler A, Vorhölter F-J, Zakrzewski M et al. (2009). EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 10: 154.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 154
-
-
Blom, J.1
Albaum, S.P.2
Doppmeier, D.3
Pühler, A.4
Vorhölter, F.-J.5
Zakrzewski, M.6
-
9
-
-
0000720795
-
Sedimentary-hosted polymetallic massive sulfide deposits of the kebrit and shaban deeps, red sea
-
Blum N, Puchelt H. (1991). Sedimentary-hosted polymetallic massive sulfide deposits of the Kebrit and Shaban Deeps, Red Sea. Mineralium Deposita 26: 217-227.
-
(1991)
Mineralium Deposita
, vol.26
, pp. 217-227
-
-
Blum, N.1
Puchelt, H.2
-
10
-
-
67249101298
-
Sulfur cycling and methanogenesis primarily drive microbial colonization of the highly sulfidic urania deep hypersaline basin
-
Borin S, Brusetti L, Mapelli F, D'Auria G, Brusa T, Marzorati M et al. (2009). Sulfur cycling and methanogenesis primarily drive microbial colonization of the highly sulfidic Urania deep hypersaline basin. Proc Natl Acad Sci USA 106: 9151-9156.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 9151-9156
-
-
Borin, S.1
Brusetti, L.2
Mapelli, F.3
D'Auria, G.4
Brusa, T.5
Marzorati, M.6
-
11
-
-
84877141015
-
Distinctive microbial community structure in highly stratified deep-sea brine water columns
-
Bougouffa S,Yang JK,Lee OO,Wang Y,Batang Z,Al-Suwailem A,et al 2013 Distinctive microbial community structure in highly stratified deep-sea brine water columns Appl Environ Microbiol 79 3425-3437
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 3425-3437
-
-
Bougouffa, S.1
Yang, J.K.2
Lee, O.O.3
Wang, Y.4
Batang, Z.5
Al-Suwailem, A.6
-
12
-
-
0034153145
-
Effect of salinity on the adaptive capacity of recombinant strains of escherichia coli and bacillus subtilis
-
Boyandin AN, Lobova TI, Krylova T Y, Kargatova TV, Popova LY, Pechurkin NS. (2000). Effect of salinity on the adaptive capacity of recombinant strains of Escherichia coli and Bacillus subtilis. Microbiology 69: 196-199.
-
(2000)
Microbiology
, vol.69
, pp. 196-199
-
-
Boyandin, A.N.1
Lobova, T.I.2
Krylova, T.Y.3
Kargatova, T.V.4
Popova, L.Y.5
Pechurkin, N.S.6
-
13
-
-
33644865958
-
Stratified prokaryote network in the oxic-Anoxic transition of a deep-sea halocline
-
Daffonchio D, Borin S, Brusa T, Brusetti L, van derWielen PWJJ, Bolhuis H et al. (2006). Stratified prokaryote network in the oxic-Anoxic transition of a deep-sea halocline. Nature 440: 203-207.
-
(2006)
Nature
, vol.440
, pp. 203-207
-
-
Daffonchio, D.1
Borin, S.2
Brusa, T.3
Brusetti, L.4
Van Derwielen, P.W.J.J.5
Bolhuis, H.6
-
15
-
-
0035403962
-
Micr obial diversity of the brine-seawater interface of the kebrit deep, red sea, studied via 16s rrna gene sequences and cultivation methods
-
Eder W, Jahnke LL, Schmidt M, Huber R. (2001). Micr obial diversity of the brine-seawater interface of the Kebrit Deep, Red Sea, studied via 16S rRNA gene sequences and cultivation methods. Appl Environ Microbiol 67: 3077-3085.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 3077-3085
-
-
Eder, W.1
Jahnke, L.L.2
Schmidt, M.3
Huber, R.4
-
16
-
-
18744398715
-
Prokaryotic phylogenetic diversity and corresponding geochemical data of the brine-seawater interface of the shaban deep, red sea
-
Eder W, Schmidt M, Koch M, Garbe Sc hönberg D, Huber R. (2002). Prokaryotic phylogenetic diversity and corresponding geochemical data of the brine-seawater interface of the Shaban Deep, Red Sea. Environ Microbiol 4: 758-763.
-
(2002)
Environ Microbiol
, vol.4
, pp. 758-763
-
-
Eder, W.1
Schmidt, M.2
Koch, M.3
Garbe Schönberg, D.4
Huber, R.5
-
17
-
-
68149112220
-
Environmental factors shaping the ecological niches of ammonia-oxidizing archaea
-
Erguder TH, Boon N, Wittebolle L, Marzorati M, Verstraete W. (2009). Environmental factors shaping the ecological niches of ammonia-oxidizing Archaea. FEMS Microbiol Rev 33: 855-869.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 855-869
-
-
Erguder, T.H.1
Boon, N.2
Wittebolle, L.3
Marzorati, M.4
Verstraete, W.5
-
18
-
-
0032413649
-
Methane in red sea brines
-
Faber E, Botz R, Poggenburg J, Schmidt M, Stoffers P, Hartmann M. (1998). Methane in Red Sea brines. Org Geochem 29: 363-379.
-
(1998)
Org Geochem
, vol.29
, pp. 363-379
-
-
Faber, E.1
Botz, R.2
Poggenburg, J.3
Schmidt, M.4
Stoffers, P.5
Hartmann, M.6
-
19
-
-
84855263243
-
Unveiling microbial life in the new deep-sea hypersaline lake thetis part ii: A metagenomic study
-
Ferrer M,Werner J, Chernikova TN, Bargiela R, Fernández L, La Cono V et al. (2012). Unveiling microbial life in the new deep-sea hypersaline Lake Thetis. Part II: a metagenomic study. Environ Microbiol 14: 268-281.
-
(2012)
Environ Microbiol
, vol.14
, pp. 268-281
-
-
Ferrer Mwerner, J.1
Chernikova, T.N.2
Bargiela, R.3
Fernández, L.4
La Cono, V.5
-
20
-
-
26844541457
-
Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the oceans
-
Francis CA, Roberts KJ, Beman JM, Santoro AE, Oakley BB. (2005). Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the oceans. Proc Natl Acad Sci USA 102: 14683-14688.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 14683-14688
-
-
Francis, C.A.1
Roberts, K.J.2
Beman, J.M.3
Santoro, A.E.4
Oakley, B.B.5
-
21
-
-
84868369211
-
Streamlining and core genome conservation among highly divergent members of the sar11 clade
-
Grote J, Thrash JC, Huggett MJ, Landry ZC, Carini P, Giovannoni SJ et al. (2012). Streamlining and core genome conservation among highly divergent members of the SAR11 clade. MBio 3: e00252-12.
-
(2012)
MBio
, vol.3
, pp. e00252-e00312
-
-
Grote, J.1
Thrash, J.C.2
Huggett, M.J.3
Landry, Z.C.4
Carini, P.5
Giovannoni, S.J.6
-
22
-
-
33845286513
-
Genomic analysis of the uncultivated marine crenarchaeote cenarchaeum symbiosum
-
Hallam SJ, Konstantinidis KT, Putnam N, Schleper C, Watanabe Y, Sugahara J et al. (2006a ). Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Proc Natl Acad Sci USA 103: 18296-18301.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 18296-18301
-
-
Hallam, S.J.1
Konstantinidis, K.T.2
Putnam, N.3
Schleper, C.4
Watanabe, Y.5
Sugahara, J.6
-
23
-
-
33646260901
-
Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine crenarchaeota
-
Hallam SJ, Mincer TJ, Schl eper C, Preston CM, Roberts K, Richardson PM et al. (2006b ). Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota. PLoS Biol 4: 520-536.
-
(2006)
PLoS Biol
, vol.4
, pp. 520-536
-
-
Hallam, S.J.1
Mincer, T.J.2
Schleper, C.3
Preston, C.M.4
Roberts, K.5
Richardson, P.M.6
-
24
-
-
0030623271
-
Hydrographic structure of brine-filled deeps in the red sea-new results from the shaban, kebrit, atlantis ii, and discovery deep
-
Hartmann M, Scholten JC, Stoffers P, Wehner F. (1998). Hydrographic structure of brine-filled deeps in the Red Sea-new results from the Shaban, Kebrit, Atlantis II, and Discovery Deep. Marine Geol 144: 311-330.
-
(1998)
Marine Geol
, vol.144
, pp. 311-330
-
-
Hartmann, M.1
Scholten, J.C.2
Stoffers, P.3
Wehner, F.4
-
25
-
-
67649270928
-
Metabolic variability in seafloor brines revealed by carbon and sulphur dynamics
-
Joye SB, Samarkin VA, Orcutt BN, MacDonald IR, Hinrichs K-U, Elvert M et al. (2009). Metabolic variability in seafloor brines revealed by carbon and sulphur dynamics. Nat Geosci 2: 349-354.
-
(2009)
Nat Geosci
, vol.2
, pp. 349-354
-
-
Joye, S.B.1
Samarkin, V.A.2
Orcutt, B.N.3
Macdonald, I.R.4
Hinrichs, K.-U.5
Elvert, M.6
-
26
-
-
84930976135
-
Halophiles-taxonomy, diversity, physiology, and applications
-
In Satyanaraya T, Johri BN, Prakash A (eds) Springer: Dordrecht
-
Kanekar PP, Kanekar SP, Kelkar AS, Dhakephalkar PK. (2012). Halophiles-taxonomy, diversity, physiology, and applications. In: Satyanaraya T, Johri BN, Prakash A (eds) Microorganisms in Environmental Management: M icrobes and Environment. Springer: Dordrecht, pp 1-34.
-
(2012)
Microorganisms in Environmental Management: M Icrobes and Environment
, pp. 1-34
-
-
Kanekar, P.P.1
Kanekar, S.P.2
Kelkar, A.S.3
Dhakephalkar, P.K.4
-
28
-
-
37749041470
-
Patterns and implications of gene gain and loss in the evolution of prochlorococcus
-
Kettler GC, Martiny AC, Huang K, Zucker J, Coleman ML, Rodrigue S et al. (2007). Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS Genet 3: e23 1.
-
(2007)
PLoS Genet
, vol.3
, pp. e231
-
-
Kettler, G.C.1
Martiny, A.C.2
Huang, K.3
Zucker, J.4
Coleman, M.L.5
Rodrigue, S.6
-
29
-
-
80053598581
-
Genome sequence of an ammonia-oxidizing soil archaeon, ' candidatus nitrosoarchaeum koreensis' my1
-
Kim BK, Jung M-Y, Yu DS, Park S-J, Oh TK, Rhee S-K et al. (2011). Genome sequence of an ammonia-oxidizing soil archaeon, ' Candidatus Nitrosoarchaeum koreensis' MY1. J Bacteriol 193: 5539-5540.
-
(2011)
J Bacteriol
, vol.193
, pp. 5539-5540
-
-
Kim, B.K.1
Jung, M.-Y.2
Yu, D.S.3
Park, S.-J.4
Oh, T.K.5
Rhee, S.-K.6
-
30
-
-
14044262978
-
Genomic insights that advance the species definition for prokaryotes
-
Konstantinidis KT, Tiedje JM. (2005). Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci USA 102: 2567-2572.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 2567-2572
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
31
-
-
0025180125
-
Description of a new species of nitrosococcus
-
Koops HP, Böttcher B, Möller UC, Pommerening-Roser A, Stehr G. (1990). Description of a new species of Nitrosococcus. Arch Microbiol 154: 244-248.
-
(1990)
Arch Microbiol
, vol.154
, pp. 244-248
-
-
Koops, H.P.1
Böttcher, B.2
Möller, U.C.3
Pommerening-Roser, A.4
Stehr, G.5
-
32
-
-
0034775280
-
Ammonia-oxidizing bacteria: A model for molecular microbial ecology
-
Kowalchuk GA,Stephen JR. 2001 Ammonia-oxidizing bacteria: a model for molecular microbial ecology Annu Rev Microbiol 55 485-529.
-
(2001)
Annu Rev Microbiol
, vol.55
, pp. 485-529
-
-
Kowalchuk, G.A.1
Stephen, J.R.2
-
33
-
-
25644435673
-
Isolation of an autotrophic ammonia-oxidizing marine archaeon
-
Könneke M, Bernhard AE, la Torre de JR, Walker CB, Waterbury JB, Stahl DA. (2005). Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437: 543-546.
-
(2005)
Nature
, vol.437
, pp. 543-546
-
-
Könneke, M.1
Bernhard, A.E.2
De La Torre, J.R.3
Walker, C.B.4
Waterbury, J.B.5
Stahl, D.A.6
-
34
-
-
84986739506
-
Adsorption of phosphate in anoxic marine sediments
-
Krom MD, Berner RA. ( 1980). Adsorption of phosphate in anoxic marine sediments. Limnol Oceanogr 25: 797-806.
-
(1980)
Limnol Oceanogr
, vol.25
, pp. 797-806
-
-
Krom, M.D.1
Berner, R.A.2
-
35
-
-
80051936638
-
Unveiling microbial life in new deep-sea hypersaline lake thetis part i: Prokaryotes and environmental settings
-
La Cono V, Smedile F, Bortoluzzi G, Arcadi E, Maimone G, Messina E et al. (2011). Unveiling microbial life in new deep-sea hypersaline Lake Thetis. Part I: Prokaryotes and environmental settings. Environ Microbiol 13: 2250-2268.
-
(2011)
Environ Microbiol
, vol.13
, pp. 2250-2268
-
-
La Cono, V.1
Smedile, F.2
Bortoluzzi, G.3
Arcadi, E.4
Maimone, G.5
Messina, E.6
-
36
-
-
0001857117
-
16S/23S rRNA sequencing
-
In Stackebrandt E, Goodfellow M (eds). New York
-
Lane DJ. (1991). 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic Acid Techniques in Bacterial Systematics. New York, pp 115-175.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
37
-
-
35549007148
-
Short pyrosequencing reads suffice for accurate microbial community analysis
-
Liu Z, Lozupone C, Hamady M, Bushman FD, Knight R. (2007). Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic Acids Res 35: e120.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. e120
-
-
Liu, Z.1
Lozupone, C.2
Hamady, M.3
Bushman, F.D.4
Knight, R.5
-
38
-
-
84894339955
-
Single-cell genomics shedding light on marine thaumarchaeota diversification
-
Luo H, Tolar BB, Swan BK, Zhang CL, Stepanauskas R, Ann Moran M et al. (2014). Single-cell genomics shedding light on marine Thaumarchaeota diversification. ISME J 8: 732-736.
-
(2014)
ISME J
, vol.8
, pp. 732-736
-
-
Luo, H.1
Tolar, B.B.2
Swan, B.K.3
Zhang, C.L.4
Stepanauskas, R.5
Ann Moran, M.6
-
39
-
-
70350052417
-
Ammonia oxidation kinetics determine niche separation of nitrifying archaea and bacteria
-
Martens-Habbena W, Berube PM, Urakawa H, la Torre de JR, Stahl DA. (2009). Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature 461: 976-979.
-
(2009)
Nature
, vol.461
, pp. 976-979
-
-
Martens-Habbena, W.1
Berube, P.M.2
Urakawa, H.3
De La Torre, J.R.4
Stahl, D.A.5
-
40
-
-
0034669780
-
Switching osmolyte strategies: Response of methanococcus thermolithotrophicus to changes in external nacl
-
Martin DD, Ciulla RA, Robinson PM, Roberts MF. (2001). Switching osmolyte strategies: response of Methanococcus thermolithotrophicus to changes in external NaCl. Biochim Biophys Acta 1524: 1-10.
-
(2001)
Biochim Biophys Acta
, vol.1524
, pp. 1-10
-
-
Martin, D.D.1
Ciulla, R.A.2
Robinson, P.M.3
Roberts, M.F.4
-
41
-
-
79953004741
-
Enrichment of a novel marine ammonia-oxidizing archaeon obtained from sand of an eelgrass zone
-
Matsutani N, Nakagawa T, Nakamura K, Takahashi R, Yoshihara K, Tokuyama T. (2011). Enrichment of a novel marine ammonia-oxidizing archaeon obtained from sand of an Eelgrass zone. Microbes Environ 26: 23-29.
-
(2011)
Microbes Environ
, vol.26
, pp. 23-29
-
-
Matsutani, N.1
Nakagawa, T.2
Nakamura, K.3
Takahashi, R.4
Yoshihara, K.5
Tokuyama, T.6
-
43
-
-
84865535718
-
Synthesis of methylphosphonic acid by marine microbes: A source for methane in the aerobic ocean
-
Metcalf WW, Griffin BM, Cicchillo RM, Gao J, Janga SC, Cooke HA et al. ( 2012). Synthesis of methylphosphonic acid by marine microbes: a source for methane in the aerobic ocean. Science 337: 1104-1107.
-
(2012)
Science
, vol.337
, pp. 1104-1107
-
-
Metcalf, W.W.1
Griffin, B.M.2
Cicchillo, R.M.3
Gao, J.4
Janga, S.C.5
Cooke, H.A.6
-
44
-
-
84861220096
-
Genome sequence of ' candidatus nitrosopumilus salaria' bd31, an ammonia-oxidizing archaeon from the san francisco bay estuary
-
Mosier AC, Allen EE, Kim M, Ferriera S, Francis CA. (2012). Genome sequence of ' Candidatus Nitrosopumilus salaria' BD31, an ammonia-oxidizing archaeon from the San Francisco Bay Estuary. J Bacteriol 194: 2121-2122.
-
(2012)
J Bacteriol
, vol.194
, pp. 2121-2122
-
-
Mosier, A.C.1
Allen, E.E.2
Kim, M.3
Ferriera, S.4
Francis, C.A.5
-
45
-
-
80053642618
-
Thaumarchaeotes abundant in refinery nitrifying sludges express amoa but are not obligate autotrophic ammonia oxidizers
-
Mussmann M, Brito I, Pitcher A, DamstéJSS, Hatzenpichler R , Richter A et al. (2011). Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers. Proc Natl Acad Sci USA 108: 16771-16776.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 16771-16776
-
-
Mussmann, M.1
Brito, I.2
Pitcher, A.3
Damsté, J.S.S.4
Hatzenpichler, R.5
Richter, A.6
-
46
-
-
84864615070
-
Low species barriers in halophilic archaea and the formation of recombinant hybrids
-
Naor A, Lapierre P, Mevarech M, Papke RT, Gophna U. (2012). Low species barriers in halophilic archaea and the formation of recombinant hybrids. Curr Biol 22: 1444-1448.
-
(2012)
Curr Biol
, vol.22
, pp. 1444-1448
-
-
Naor, A.1
Lapierre, P.2
Mevarech, M.3
Papke, R.T.4
Gophna, U.5
-
47
-
-
67149131585
-
Archaeal diversity and the prevalence of crenarchaeota in salt marsh sediments
-
Nelson KA, Moin NS, Bernhard AE. (2009). Archaeal diversity and the prevalence of Crenarchaeota in salt marsh sediments. Appl Environ Microbiol 75: 4211-4215.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 4211-4215
-
-
Nelson, K.A.1
Moin, N.S.2
Bernhard, A.E.3
-
48
-
-
84869756836
-
Combined analyses of the its loci and the corresponding 16s rrna genes reveal high micro-And macrodiversity of sar11 populations in the red sea
-
Ngugi DK, Stingl U. (2012). C ombined analyses of the ITS Loci and the corresponding 16S rRNA genes reveal high micro-And macrodiversity of SAR11 populations in the Red Sea. PLoS One 7: e50274.
-
(2012)
PLoS One
, vol.7
, pp. e50274
-
-
Ngugi, D.K.1
Stingl, U.2
-
49
-
-
57449104373
-
Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments
-
Oda Y, Larimer FW, Chain PSG, Malfatti S, S hin MV, Vergez LM et al. (2008). Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments. Proc Natl Acad Sci USA 105: 18543-18548.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 18543-18548
-
-
Oda, Y.1
Larimer, F.W.2
Chain, P.S.G.3
Malfatti, S.4
Shin, M.V.5
Vergez, L.M.6
-
50
-
-
0033022073
-
Bio energetic aspects of halophilism
-
Oren A. (1999). Bio energetic aspects of halophilism. Microbiol Mol Biol Rev 63: 334-348.
-
(1999)
Microbiol Mol Biol Rev
, vol.63
, pp. 334-348
-
-
Oren, A.1
-
51
-
-
79952209867
-
Thermodynamic limits to microbial life at high salt concentrations
-
Oren A. (2011). Thermodynamic limits to microbial life at high salt concentrations. Environ Microbiol 13: 1908-1923.
-
(2011)
Environ Microbiol
, vol.13
, pp. 1908-1923
-
-
Oren, A.1
-
52
-
-
84890305097
-
Life at high salt concentrations, intracellular kcl concentrations, and acidic proteomes
-
Oren A.(2013). Life at high salt concentrations, intracellular KCl concentrations, and acidic proteomes. Front in Microbiol 4: 1-6.
-
(2013)
Front in Microbiol
, vol.4
, pp. 1-6
-
-
Oren, A.1
-
53
-
-
0012599141
-
Intracellular ion an d organic solute concentrations of the extremely halophilic bacterium salinibacter ruber
-
Oren A,Heldal M,Norland S,Galinski EA. 2002 Intracellular ion an d organic solute concentrations of the extremely halophilic bacterium Salinibacter ruber Extremophiles 6, 491-498.
-
(2002)
Extremophiles
, vol.6
, pp. 491-498
-
-
Oren, A.1
Heldal, M.2
Norland, S.3
Galinski, E.A.4
-
54
-
-
0033754312
-
Marine planktonic archaea take up amino acids
-
Ouverney CC, Fuhrman JA. (2000). Marine planktonic archaea take up amino acids. Appl Environ Microbiol 66: 4829-4833.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4829-4833
-
-
Ouverney, C.C.1
Fuhrman, J.A.2
-
55
-
-
78649703098
-
Cultivation of autotrophic ammoniaoxidizing archaea from marine sediments in coculture with sulfur-oxi dizing bacteria
-
Park B-J, Park S-J, Yoon D-N, Schouten S, Damste JSS, Rhee S-K. (2010). Cultivation of autotrophic ammoniaoxidizing Archaea from marine sediments in coculture with sulfur-oxi dizing Bacteria. Appl Environ Microbiol 76: 7575-7587.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 7575-7587
-
-
Park, B.-J.1
Park, S.-J.2
Yoon, D.-N.3
Schouten, S.4
Damste, J.S.S.5
Rhee, S.-K.6
-
56
-
-
84870692770
-
Draft genome sequence of an ammoniaoxidizing archaeon,'candidatus nit rosopumilus sediminis' ar2, from svalbard in the arctic circle
-
Park S-J, Kim J-G, Jung M-Y, Kim S-J, Cha I-T, Ghai R et al. (2012a). Draft genome sequence of an ammoniaoxidizing archaeon,'Candidatus Nit rosopumilus sediminis' AR2, from Svalbard in the Arctic Circle. J Bacteriol 194: 6948-6949.
-
(2012)
J Bacteriol
, vol.194
, pp. 6948-6949
-
-
Park, S.-J.1
Kim, J.-G.2
Jung, M.-Y.3
Kim, S.-J.4
Cha, I.-T.5
Ghai, R.6
-
57
-
-
84870692770
-
Draft genome sequence of an ammoniaoxidizing archaeon, ' candidatus nitrosopumilus koreensis' ar1, from marine sediment
-
Park S-J, Kim J-G, Jung M-Y, Kim S-J, Cha I-T, Kwon K et al. (2012b). Draft genome sequence of an ammoniaoxidizing archaeon, ' Candidatus Nitrosopumilus koreensis' AR1, from marine sediment. J Bacteriol 194: 6940-6941.
-
(2012)
J Bacteriol
, vol.194
, pp. 6940-6941
-
-
Park, S.-J.1
Kim, J.-G.2
Jung, M.-Y.3
Kim, S.-J.4
Cha, I.-T.5
Kwon, K.6
-
58
-
-
77957021208
-
Ectoines in cell stress protection: Uses and biotechnogical production
-
Pastor JM, Salvador M, Argandona M, Bernal V, Reina-Bueno M, Csonka LN et al. (2010 ). Ectoines in cell stress protection: Uses and biotechnogical production. Biotechnol Adv 28: 782-801.
-
(2010)
Biotechnol Adv
, vol.28
, pp. 782-801
-
-
Pastor, J.M.1
Salvador, M.2
Argandona, M.3
Bernal, V.4
Reina-Bueno, M.5
Csonka, L.N.6
-
59
-
-
47149088683
-
Molecular signature of hypersaline ada ptation: Insights from genome and proteome composition of halophilic prokaryotes
-
Paul S, Bag SK, Das S, Harvill ET, Dutta C. (2008). Molecular signature of hypersaline ada ptation: insights from genome and proteome composition of halophilic prokaryotes. Genome Biol 9: R70.
-
(2008)
Genome Biol
, vol.9
, pp. R70
-
-
Paul, S.1
Bag, S.K.2
Das, S.3
Harvill, E.T.4
Dutta, C.5
-
60
-
-
80054845081
-
Cdv-bas ed cell division and cell cycle organization in the thaumarchaeon nitrosopumilus maritimus
-
Pelve EA, Lindas A-C, Martens-Habbena W, la Torre de JR, Stahl DA, Bernander R. (2011). Cdv-bas ed cell division and cell cycle organization in the thaumarchaeon Nitrosopumilus maritimus. Mol Microbiol 82: 555-566.
-
(2011)
Mol Microbiol
, vol.82
, pp. 555-566
-
-
Pelve, E.A.1
Lindas, A.-C.2
Martens-Habbena, W.3
De La Torre, J.R.4
Stahl, D.A.5
Bernander, R.6
-
61
-
-
84867901720
-
Archaeal and bacterial ammonia-oxidizers in soil: The quest for niche specialisation and differentiation
-
Prosser JI, Nicol GW. (2012). Archaeal and bacterial ammonia-oxidizers in soil: the quest for niche specialisation and differentiation. Trends Microbiol 20: 523-531.
-
(2012)
Trends Microbiol
, vol.20
, pp. 523-531
-
-
Prosser, J.I.1
Nicol, G.W.2
-
62
-
-
84881138595
-
Insights into the phylogeny and coding potential of microbial dark matter
-
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng J-F et al. (2013). Insights into the phylogeny and coding potential of microbial dark matter. Nature 499: 431-437.
-
(2013)
Nature
, vol.499
, pp. 431-437
-
-
Rinke, C.1
Schwientek, P.2
Sczyrba, A.3
Ivanova, N.N.4
Anderson, I.J.5
Cheng, J.-F.6
-
63
-
-
84899507119
-
Obtaining genomes from uncultivated environmental microorganisms using facs-based single-cell genomics
-
Rinke C, Lee J, Nath N, Goudeau D, Th ompson B, Poulton N et al. (2014). Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics. Nat Protocol 9: 1038-1048.
-
(2014)
Nat Protocol
, vol.9
, pp. 1038-1048
-
-
Rinke, C.1
Lee, J.2
Nath, N.3
Goudeau, D.4
Thompson, B.5
Poulton, N.6
-
64
-
-
33947238287
-
The sorcerer ii global ocean sampling expedition: Northwest atlantic through eastern tropical pacific
-
Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S et al. (2007). The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific. PLoS Biol 5: e77.
-
(2007)
PLoS Biol
, vol.5
, pp. e77
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
Heidelberg, K.B.4
Williamson, S.5
Yooseph, S.6
-
65
-
-
0011971442
-
Suspended matter in the red sea brines and its detection by light scattering
-
In Degens E, Ross DA (eds) Springer: New York, NY
-
Ryan WBF, Thorndike EM, Ewing M, Ross DA. (1969). Suspended matter in the Red Sea brines and its detection by light scattering. In: Degens E, Ross DA (eds) Hot Brines and Recent Heavy Metal Deposits in the Red Sea. Springer: New York, NY, pp 153-157.
-
(1969)
Hot Brines and Recent Heavy Metal Deposits in the Red Sea
, pp. 153-157
-
-
Ryan, W.B.F.1
Thorndike, E.M.2
Ewing, M.3
Ross, D.A.4
-
66
-
-
0035651017
-
Microbial communities in the chemocline of a hypersaline deep-sea basin (urania basin, mediterranean sea
-
Sass AM, Sass H, Coolen MJ, Cypionka H, Overmann J. (2001). Microbial communities in the chemocline of a hypersaline deep-sea basin (Urania basin, Mediterranean Sea). Appl Environ Microbiol 67: 5392-5402.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 5392-5402
-
-
Sass, A.M.1
Sass, H.2
Coolen, M.J.3
Cypionka, H.4
Overmann, J.5
-
67
-
-
34948832666
-
Salinity-dependent switching of osmolyte strategies in a moderately halophilic bacterium: Glutamate induces proline biosynthesis in halobacillus halophilus
-
Saum SH, Muller V. (2007). Salinity-dependent switching of osmolyte strategies in a moderately halophilic bacterium: glutamate induces proline biosynthesis in Halobacillus halophilus. J Bacteriol 189 : 6968-6975.
-
(2007)
J Bacteriol
, vol.189
, pp. 6968-6975
-
-
Saum, S.H.1
Muller, V.2
-
68
-
-
0141890643
-
High-resolution methane profiles across anoxic brine-seawater boundaries in the atlantis-ii di scovery, and kebrit deeps (red sea
-
Schmidt M, Botz R, Faber E, Schmitt M, Poggenburg J, Garbe-Schönberg D et al. (2003). High-resolution methane profiles across anoxic brine-seawater boundaries in the Atlantis-II, Di scovery, and Kebrit Deeps (Red Sea). Chem Geol 200: 359-375.
-
(2003)
Chem Geol
, vol.200
, pp. 359-375
-
-
Schmidt, M.1
Botz, R.2
Faber, E.3
Schmitt, M.4
Poggenburg, J.5
Garbe-Schönberg, D.6
-
69
-
-
84903376499
-
Crenarchaeal heterotrophy in salt marsh sediments
-
Seyler LM, McGuiness LM, Kerkhof LJ. (2014). Crenarchaeal heterotrophy in salt marsh sediments. ISME J 8: 1534-1543.
-
(2014)
ISME J
, vol.8
, pp. 1534-1543
-
-
Seyler, L.M.1
McGuiness, L.M.2
Kerkhof, L.J.3
-
70
-
-
84870486180
-
The genome of the ammoniaoxidizing candidatus nitrososphaera gargensis: Insights into metabolic versatility and environmental adaptations
-
Span g A, Poehlein A, Offre P, Zumbrägel S, Haider S, Rychlik N et al. (2012). The genome of the ammoniaoxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations. Environ Microbiol 14: 3122-3145.
-
(2012)
Environ Microbiol
, vol.14
, pp. 3122-3145
-
-
Spang, A.1
Poehlein, A.2
Offre, P.3
Zumbrägel, S.4
Haider, S.5
Rychlik, N.6
-
71
-
-
84872250001
-
Physiology and diversity of ammonia-oxidizing archaea
-
Stahl DA, de la Torre JR. (2012). Physiology and diversity of ammonia-oxidizing Archaea. Annu Rev Microbiol 66: 83-101.
-
(2012)
Annu Rev Microbiol
, vol.66
, pp. 83-101
-
-
Stahl, D.A.1
De La Torre, J.R.2
-
72
-
-
84868098266
-
Single cell genomics: An individual look at microbes
-
Stepanauskas R. (2012). Single cell genomics: an individual look at microbes. Curr Opin Microbiol 15: 613-620.
-
(2012)
Curr Opin Microbiol
, vol.15
, pp. 613-620
-
-
Stepanauskas, R.1
-
73
-
-
75749088428
-
Archaeal an d bacterial communities respond differently to environmental gradients in anoxic sediments of a california hypersaline lake, the salton sea
-
Swan BK, Ehrhardt CJ, Reifel KM, Moreno LI, Valentine DL. (2010). Archaeal an d Bacterial communities respond differently to environmental gradients in anoxic sediments of a California Hypersaline Lake, the Salton Sea. Appl Environ Microbiol 76: 757-768.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 757-768
-
-
Swan, B.K.1
Ehrhardt, C.J.2
Reifel, K.M.3
Moreno, L.I.4
Valentine, D.L.5
-
74
-
-
84860528128
-
Vertical, horizontal, and temporal changes in temperature in the atlantis ii and discovery hot brine pools, red sea
-
Swift SA, Bower AS, Schmitt RW. (2012).Vertical, horizontal, and temporal changes in temperature in the Atlantis II and Discovery hot brine pools, Red Sea. Deep Sea Res Part I Oceanogr Res Pap 64: 118-128.
-
(2012)
Deep Sea Res Part i Oceanogr Res Pap
, vol.64
, pp. 118-128
-
-
Swift, S.A.1
Bower, A.S.2
Schmitt, R.W.3
-
75
-
-
4344670204
-
Application of tetranucleotide frequencies for the assignment of genomic fragments
-
Teeling H,Meyerdierks A,Bauer M,Amann R,Glöckner FO. 2004 Application of tetranucleotide frequencies for the assignment of genomic fragments Environ Microbiol 6, 938-947.
-
(2004)
Environ Microbiol
, vol.6
, pp. 938-947
-
-
Teeling, H.1
Meyerdierks, A.2
Bauer, M.3
Amann, R.4
Glöckner, F.O.5
-
76
-
-
32944469326
-
Archaeal uptake of enantiomeric amino acids in the meso-And bathypelagic waters of the north atlantic
-
Teira E, Van A ken H, Veth C, Herndl GJ. (2006). Archaeal uptake of enantiomeric amino acids in the meso-And bathypelagic waters of the North Atlantic. Limnol Oceanogr 51: 60-69.
-
(2006)
Limnol Oceanogr
, vol.51
, pp. 60-69
-
-
Teira, E.1
Van, A.2
Ken, H.3
Veth, C.4
Herndl, G.J.5
-
77
-
-
25444524604
-
Genome analysis of multiple pathogenic isolates of streptococcus agalactiae: Implications for the microbial ' pan-genome
-
Tettelin H, Masignani V, Cieslewic z MJ, Donati C, Medini D, Ward NL et al. (2005). Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial ' pan-genome'. Proc Natl Acad Sci USA 102: 13950-13955.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 13950-13955
-
-
Tettelin, H.1
Masignani, V.2
Cieslewicz, M.J.3
Donati, C.4
Medini, D.5
Ward, N.L.6
-
78
-
-
41149093627
-
Uncultured archaea in deep marine subsurface sediments: Have we caught them all?
-
Teske A, Sorensen KB. (2008). Uncultured Archaea in deep marine subsurface sediments: have we caught them all? ISME J 2: 3-18.
-
(2008)
ISME J
, vol.2
, pp. 3-18
-
-
Teske, A.1
Sorensen, K.B.2
-
79
-
-
79957684288
-
Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil
-
Tourna M, Stieglmeier M, Spang A, Könneke M, Schintlmeister A, Urich T et al. (2011). Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. Proc Natl Acad Sci USA 108: 8420-8425.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 8420-8425
-
-
Tourna, M.1
Stieglmeier, M.2
Spang, A.3
Könneke, M.4
Schintlmeister, A.5
Urich, T.6
-
80
-
-
67349133222
-
Distribution of crenarchaeota tetraether membrane lipids in surface sediments from the red sea
-
Trommer G, Siccha M, van der Meer MTJ, Schouten S, DamstéJSS, Schulz H et al. (2009). Distribution of Crenarchaeota tetraether membrane lipids in surface sediments from the Red Sea. Organic Geochem 40: 724-731.
-
(2009)
Organic Geochem
, vol.40
, pp. 724-731
-
-
Trommer, G.1
Siccha, M.2
Van Der Meer, M.T.J.3
Schouten, S.4
Damsté, J.S.S.5
Schulz, H.6
-
81
-
-
19944426100
-
The enigma of prokaryotic life in deep hypersaline anoxic basins
-
van der Wielen PWJJP Bolhuis HH, Borin SS, Daffo nchio DD, Corselli CC, Giuliano LL et al. (2005). The enigma of prokaryotic life in deep hypersaline anoxic basins. Science 307: 121-123.
-
(2005)
Science
, vol.307
, pp. 121-123
-
-
Van Der Wielen, P.W.J.J.P.1
Bolhuis, H.H.2
Borin, S.S.3
Daffonchio, D.D.4
Corselli, C.C.5
Giuliano, L.L.6
-
82
-
-
38149099894
-
Latitudinal trends of crenarchaeota and bacteria in the meso-And bathypelagic water masses of the eastern north atlantic
-
Varela MM, van Aken HM, Sintes E, Herndl GJ. (20 08). Latitudinal trends of Crenarchaeota and Bacteria in the meso-And bathypelagic water masses of the Eastern North Atlantic. Environ Microbiol 10: 110-124.
-
(2008)
Environ Microbiol
, vol.10
, pp. 110-124
-
-
Varela, M.M.1
Van Aken, H.M.2
Sintes, E.3
Herndl, G.J.4
-
83
-
-
77952739182
-
Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
-
Walker CB, la Torre de JR, Klotz MG, Urakawa H, Pinel N, Arp DJ et al. (2010). Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. Proc Natl Acad Sci USA 107: 8818-8823.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 8818-8823
-
-
Walker, C.B.1
De La Torre, J.R.2
Klotz, M.G.3
Urakawa, H.4
Pinel, N.5
Arp, D.J.6
-
84
-
-
36849028081
-
Primary producing prokaryotic communities of brine, interface and seawater above the halocline of deep anoxic lake l'atalante, eastern medit erranean sea
-
Y akimov MM, La Cono V, Denaro R, D'Auria G, Decembrini F, Timmis KN et al. (2007). Primary producing prokaryotic communities of brine, interface and seawater above the halocline of deep anoxic lake L'Atalante, Eastern Medit erranean Sea. ISME J 1: 743-755.
-
(2007)
ISME J
, vol.1
, pp. 743-755
-
-
Akimov, M.M.Y.1
La Cono, V.2
Denaro, R.3
D'Auria, G.4
Decembrini, F.5
Timmis, K.N.6
-
85
-
-
84890902208
-
Microbial life in the lake medee, the largest deep-sea salt-saturated formation
-
Yakimov MM, La Cono V, Slepak VZ, La Spada G, Arcadi E, Messina E et al. (2013). Microbial life in the Lake Medee, the largest deep-sea salt-saturated formation. Sci Rep 3: 3554.
-
(2013)
Sci Rep
, vol.3
, pp. 3554
-
-
Yakimov, M.M.1
La Cono, V.2
Slepak, V.Z.3
La Spada, G.4
Arcadi, E.5
Messina, E.6
-
86
-
-
0035813128
-
Structural integrity of histone h2b in vivo requires the activity of protein l-isoaspartateo-methyltransferase, a putativ e protein repair enzyme
-
Young AL, Carter WG, Doyle HA, Mamula MJ, Aswad DW. (2001). Structural integrity of histone H2B in vivo requires the activity of protein L-isoaspartateO-methyltransferase, a putativ e protein repair enzyme. J Biol Chem 276: 37161-37165.
-
(2001)
J Biol Chem
, vol.276
, pp. 37161-37165
-
-
Young, A.L.1
Carter, W.G.2
Doyle, H.A.3
Mamula, M.J.4
Aswad, D.W.5
-
87
-
-
79958755814
-
The stimulatory effect of cacl2, nacl and nh4no3 salts on the ssdna-binding activity of reca depends on nu cleotide cofactor and buffer ph
-
Ziemienowicz A, Rahavi SMR, Kovalchuk I. (2011). The stimulatory effect of CaCl2, NaCl and NH4NO3 salts on the ssDNA-binding activity of RecA depends on nu cleotide cofactor and buffer pH. BMB Rep 44: 341-346.
-
(2011)
BMB Rep
, vol.44
, pp. 341-346
-
-
Ziemienowicz, A.1
Rahavi, S.M.R.2
Kovalchuk, I.3
|