메뉴 건너뛰기




Volumn 9, Issue 2, 2015, Pages 396-411

Comparative genomics reveals adaptations of a halotolerant thaumarchaeon in the interfaces of brine pools in the Red Sea

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; CANDIDATUS NITROSOPUMILUS; CANDIDATUS NITROSOPUMILUS MARITIMUS; NITROSOMONADALES;

EID: 84921612289     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2014.137     Document Type: Article
Times cited : (55)

References (87)
  • 3
    • 80054837085 scopus 로고    scopus 로고
    • Microbiology of the red sea (and other) deep-sea anoxic brine lakes
    • Antunes A, Ngugi DK, Stingl U. (2011). Microbiology of the Red Sea (and other) deep-sea anoxic brine lakes. Environ Microbiol Rep 3: 416-433.
    • (2011) Environ Microbiol Rep , vol.3 , pp. 416-433
    • Antunes, A.1    Ngugi, D.K.2    Stingl, U.3
  • 4
    • 37249052742 scopus 로고    scopus 로고
    • A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in archaea
    • Berg IA, Kockelkorn D, Buckel W, Fuchs G. (2007). A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea. Science 318: 1782-1786.
    • (2007) Science , vol.318 , pp. 1782-1786
    • Berg, I.A.1    Kockelkorn, D.2    Buckel, W.3    Fuchs, G.4
  • 5
    • 23944433934 scopus 로고    scopus 로고
    • Loss of diversity of ammonia-oxidizing bacteria correlates with increasing salinity in an estuary system
    • Bernhard AE, Donn T, Giblin AE, Stahl DA. (2005). Loss of diversity of ammonia-oxidizing bacteria correlates with increasing salinity in an estuary system. Environ Microbiol 7: 1289-1297.
    • (2005) Environ Microbiol , vol.7 , pp. 1289-1297
    • Bernhard, A.E.1    Donn, T.2    Giblin, A.E.3    Stahl, D.A.4
  • 6
    • 84874550637 scopus 로고    scopus 로고
    • Global biodiversity of aquatic ammonia-oxidizing archaea is partitioned by habitat
    • Bille r SJ, Mosier AC, Wells GF, Francis CA. (2012). Global biodiversity of aquatic ammonia-oxidizing archaea is partitioned by habitat. Front Microbiol 3: 252.
    • (2012) Front Microbiol , vol.3 , pp. 252
    • Biller, S.J.1    Mosier, A.C.2    Wells, G.F.3    Francis, C.A.4
  • 7
    • 79952050667 scopus 로고    scopus 로고
    • Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis
    • Blainey PC, Mosier AC, Potanina A, Fran cis CA, Quake SR. (2011). Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLoS One 6: e16626.
    • (2011) PLoS One , vol.6 , pp. e16626
    • Blainey, P.C.1    Mosier, A.C.2    Potanina, A.3    Fran Cis, C.A.4    Quake, S.R.5
  • 9
    • 0000720795 scopus 로고
    • Sedimentary-hosted polymetallic massive sulfide deposits of the kebrit and shaban deeps, red sea
    • Blum N, Puchelt H. (1991). Sedimentary-hosted polymetallic massive sulfide deposits of the Kebrit and Shaban Deeps, Red Sea. Mineralium Deposita 26: 217-227.
    • (1991) Mineralium Deposita , vol.26 , pp. 217-227
    • Blum, N.1    Puchelt, H.2
  • 10
    • 67249101298 scopus 로고    scopus 로고
    • Sulfur cycling and methanogenesis primarily drive microbial colonization of the highly sulfidic urania deep hypersaline basin
    • Borin S, Brusetti L, Mapelli F, D'Auria G, Brusa T, Marzorati M et al. (2009). Sulfur cycling and methanogenesis primarily drive microbial colonization of the highly sulfidic Urania deep hypersaline basin. Proc Natl Acad Sci USA 106: 9151-9156.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 9151-9156
    • Borin, S.1    Brusetti, L.2    Mapelli, F.3    D'Auria, G.4    Brusa, T.5    Marzorati, M.6
  • 12
    • 0034153145 scopus 로고    scopus 로고
    • Effect of salinity on the adaptive capacity of recombinant strains of escherichia coli and bacillus subtilis
    • Boyandin AN, Lobova TI, Krylova T Y, Kargatova TV, Popova LY, Pechurkin NS. (2000). Effect of salinity on the adaptive capacity of recombinant strains of Escherichia coli and Bacillus subtilis. Microbiology 69: 196-199.
    • (2000) Microbiology , vol.69 , pp. 196-199
    • Boyandin, A.N.1    Lobova, T.I.2    Krylova, T.Y.3    Kargatova, T.V.4    Popova, L.Y.5    Pechurkin, N.S.6
  • 14
    • 0019196325 scopus 로고
    • Chemical investigations of atlantis ii and discovery brines in the red sea
    • Danielsson L-G, Dyrssen D, Granéli A. (1980). Chemical investigations of Atlantis II and discovery brines in the Red Sea. Geochimica et Cosmochimica Acta 44: 2051-2065.
    • (1980) Geochimica et Cosmochimica Acta , vol.44 , pp. 2051-2065
    • Danielsson, L.-G.1    Dyrssen, D.2    Granéli, A.3
  • 15
    • 0035403962 scopus 로고    scopus 로고
    • Micr obial diversity of the brine-seawater interface of the kebrit deep, red sea, studied via 16s rrna gene sequences and cultivation methods
    • Eder W, Jahnke LL, Schmidt M, Huber R. (2001). Micr obial diversity of the brine-seawater interface of the Kebrit Deep, Red Sea, studied via 16S rRNA gene sequences and cultivation methods. Appl Environ Microbiol 67: 3077-3085.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3077-3085
    • Eder, W.1    Jahnke, L.L.2    Schmidt, M.3    Huber, R.4
  • 16
    • 18744398715 scopus 로고    scopus 로고
    • Prokaryotic phylogenetic diversity and corresponding geochemical data of the brine-seawater interface of the shaban deep, red sea
    • Eder W, Schmidt M, Koch M, Garbe Sc hönberg D, Huber R. (2002). Prokaryotic phylogenetic diversity and corresponding geochemical data of the brine-seawater interface of the Shaban Deep, Red Sea. Environ Microbiol 4: 758-763.
    • (2002) Environ Microbiol , vol.4 , pp. 758-763
    • Eder, W.1    Schmidt, M.2    Koch, M.3    Garbe Schönberg, D.4    Huber, R.5
  • 19
    • 84855263243 scopus 로고    scopus 로고
    • Unveiling microbial life in the new deep-sea hypersaline lake thetis part ii: A metagenomic study
    • Ferrer M,Werner J, Chernikova TN, Bargiela R, Fernández L, La Cono V et al. (2012). Unveiling microbial life in the new deep-sea hypersaline Lake Thetis. Part II: a metagenomic study. Environ Microbiol 14: 268-281.
    • (2012) Environ Microbiol , vol.14 , pp. 268-281
    • Ferrer Mwerner, J.1    Chernikova, T.N.2    Bargiela, R.3    Fernández, L.4    La Cono, V.5
  • 20
    • 26844541457 scopus 로고    scopus 로고
    • Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the oceans
    • Francis CA, Roberts KJ, Beman JM, Santoro AE, Oakley BB. (2005). Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the oceans. Proc Natl Acad Sci USA 102: 14683-14688.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 14683-14688
    • Francis, C.A.1    Roberts, K.J.2    Beman, J.M.3    Santoro, A.E.4    Oakley, B.B.5
  • 21
    • 84868369211 scopus 로고    scopus 로고
    • Streamlining and core genome conservation among highly divergent members of the sar11 clade
    • Grote J, Thrash JC, Huggett MJ, Landry ZC, Carini P, Giovannoni SJ et al. (2012). Streamlining and core genome conservation among highly divergent members of the SAR11 clade. MBio 3: e00252-12.
    • (2012) MBio , vol.3 , pp. e00252-e00312
    • Grote, J.1    Thrash, J.C.2    Huggett, M.J.3    Landry, Z.C.4    Carini, P.5    Giovannoni, S.J.6
  • 23
    • 33646260901 scopus 로고    scopus 로고
    • Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine crenarchaeota
    • Hallam SJ, Mincer TJ, Schl eper C, Preston CM, Roberts K, Richardson PM et al. (2006b ). Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota. PLoS Biol 4: 520-536.
    • (2006) PLoS Biol , vol.4 , pp. 520-536
    • Hallam, S.J.1    Mincer, T.J.2    Schleper, C.3    Preston, C.M.4    Roberts, K.5    Richardson, P.M.6
  • 24
    • 0030623271 scopus 로고    scopus 로고
    • Hydrographic structure of brine-filled deeps in the red sea-new results from the shaban, kebrit, atlantis ii, and discovery deep
    • Hartmann M, Scholten JC, Stoffers P, Wehner F. (1998). Hydrographic structure of brine-filled deeps in the Red Sea-new results from the Shaban, Kebrit, Atlantis II, and Discovery Deep. Marine Geol 144: 311-330.
    • (1998) Marine Geol , vol.144 , pp. 311-330
    • Hartmann, M.1    Scholten, J.C.2    Stoffers, P.3    Wehner, F.4
  • 29
    • 80053598581 scopus 로고    scopus 로고
    • Genome sequence of an ammonia-oxidizing soil archaeon, ' candidatus nitrosoarchaeum koreensis' my1
    • Kim BK, Jung M-Y, Yu DS, Park S-J, Oh TK, Rhee S-K et al. (2011). Genome sequence of an ammonia-oxidizing soil archaeon, ' Candidatus Nitrosoarchaeum koreensis' MY1. J Bacteriol 193: 5539-5540.
    • (2011) J Bacteriol , vol.193 , pp. 5539-5540
    • Kim, B.K.1    Jung, M.-Y.2    Yu, D.S.3    Park, S.-J.4    Oh, T.K.5    Rhee, S.-K.6
  • 30
    • 14044262978 scopus 로고    scopus 로고
    • Genomic insights that advance the species definition for prokaryotes
    • Konstantinidis KT, Tiedje JM. (2005). Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci USA 102: 2567-2572.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 2567-2572
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 32
    • 0034775280 scopus 로고    scopus 로고
    • Ammonia-oxidizing bacteria: A model for molecular microbial ecology
    • Kowalchuk GA,Stephen JR. 2001 Ammonia-oxidizing bacteria: a model for molecular microbial ecology Annu Rev Microbiol 55 485-529.
    • (2001) Annu Rev Microbiol , vol.55 , pp. 485-529
    • Kowalchuk, G.A.1    Stephen, J.R.2
  • 34
    • 84986739506 scopus 로고
    • Adsorption of phosphate in anoxic marine sediments
    • Krom MD, Berner RA. ( 1980). Adsorption of phosphate in anoxic marine sediments. Limnol Oceanogr 25: 797-806.
    • (1980) Limnol Oceanogr , vol.25 , pp. 797-806
    • Krom, M.D.1    Berner, R.A.2
  • 35
    • 80051936638 scopus 로고    scopus 로고
    • Unveiling microbial life in new deep-sea hypersaline lake thetis part i: Prokaryotes and environmental settings
    • La Cono V, Smedile F, Bortoluzzi G, Arcadi E, Maimone G, Messina E et al. (2011). Unveiling microbial life in new deep-sea hypersaline Lake Thetis. Part I: Prokaryotes and environmental settings. Environ Microbiol 13: 2250-2268.
    • (2011) Environ Microbiol , vol.13 , pp. 2250-2268
    • La Cono, V.1    Smedile, F.2    Bortoluzzi, G.3    Arcadi, E.4    Maimone, G.5    Messina, E.6
  • 36
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • In Stackebrandt E, Goodfellow M (eds). New York
    • Lane DJ. (1991). 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic Acid Techniques in Bacterial Systematics. New York, pp 115-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 37
    • 35549007148 scopus 로고    scopus 로고
    • Short pyrosequencing reads suffice for accurate microbial community analysis
    • Liu Z, Lozupone C, Hamady M, Bushman FD, Knight R. (2007). Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic Acids Res 35: e120.
    • (2007) Nucleic Acids Res , vol.35 , pp. e120
    • Liu, Z.1    Lozupone, C.2    Hamady, M.3    Bushman, F.D.4    Knight, R.5
  • 38
    • 84894339955 scopus 로고    scopus 로고
    • Single-cell genomics shedding light on marine thaumarchaeota diversification
    • Luo H, Tolar BB, Swan BK, Zhang CL, Stepanauskas R, Ann Moran M et al. (2014). Single-cell genomics shedding light on marine Thaumarchaeota diversification. ISME J 8: 732-736.
    • (2014) ISME J , vol.8 , pp. 732-736
    • Luo, H.1    Tolar, B.B.2    Swan, B.K.3    Zhang, C.L.4    Stepanauskas, R.5    Ann Moran, M.6
  • 39
    • 70350052417 scopus 로고    scopus 로고
    • Ammonia oxidation kinetics determine niche separation of nitrifying archaea and bacteria
    • Martens-Habbena W, Berube PM, Urakawa H, la Torre de JR, Stahl DA. (2009). Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature 461: 976-979.
    • (2009) Nature , vol.461 , pp. 976-979
    • Martens-Habbena, W.1    Berube, P.M.2    Urakawa, H.3    De La Torre, J.R.4    Stahl, D.A.5
  • 40
    • 0034669780 scopus 로고    scopus 로고
    • Switching osmolyte strategies: Response of methanococcus thermolithotrophicus to changes in external nacl
    • Martin DD, Ciulla RA, Robinson PM, Roberts MF. (2001). Switching osmolyte strategies: response of Methanococcus thermolithotrophicus to changes in external NaCl. Biochim Biophys Acta 1524: 1-10.
    • (2001) Biochim Biophys Acta , vol.1524 , pp. 1-10
    • Martin, D.D.1    Ciulla, R.A.2    Robinson, P.M.3    Roberts, M.F.4
  • 43
    • 84865535718 scopus 로고    scopus 로고
    • Synthesis of methylphosphonic acid by marine microbes: A source for methane in the aerobic ocean
    • Metcalf WW, Griffin BM, Cicchillo RM, Gao J, Janga SC, Cooke HA et al. ( 2012). Synthesis of methylphosphonic acid by marine microbes: a source for methane in the aerobic ocean. Science 337: 1104-1107.
    • (2012) Science , vol.337 , pp. 1104-1107
    • Metcalf, W.W.1    Griffin, B.M.2    Cicchillo, R.M.3    Gao, J.4    Janga, S.C.5    Cooke, H.A.6
  • 44
    • 84861220096 scopus 로고    scopus 로고
    • Genome sequence of ' candidatus nitrosopumilus salaria' bd31, an ammonia-oxidizing archaeon from the san francisco bay estuary
    • Mosier AC, Allen EE, Kim M, Ferriera S, Francis CA. (2012). Genome sequence of ' Candidatus Nitrosopumilus salaria' BD31, an ammonia-oxidizing archaeon from the San Francisco Bay Estuary. J Bacteriol 194: 2121-2122.
    • (2012) J Bacteriol , vol.194 , pp. 2121-2122
    • Mosier, A.C.1    Allen, E.E.2    Kim, M.3    Ferriera, S.4    Francis, C.A.5
  • 45
    • 80053642618 scopus 로고    scopus 로고
    • Thaumarchaeotes abundant in refinery nitrifying sludges express amoa but are not obligate autotrophic ammonia oxidizers
    • Mussmann M, Brito I, Pitcher A, DamstéJSS, Hatzenpichler R , Richter A et al. (2011). Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers. Proc Natl Acad Sci USA 108: 16771-16776.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 16771-16776
    • Mussmann, M.1    Brito, I.2    Pitcher, A.3    Damsté, J.S.S.4    Hatzenpichler, R.5    Richter, A.6
  • 46
    • 84864615070 scopus 로고    scopus 로고
    • Low species barriers in halophilic archaea and the formation of recombinant hybrids
    • Naor A, Lapierre P, Mevarech M, Papke RT, Gophna U. (2012). Low species barriers in halophilic archaea and the formation of recombinant hybrids. Curr Biol 22: 1444-1448.
    • (2012) Curr Biol , vol.22 , pp. 1444-1448
    • Naor, A.1    Lapierre, P.2    Mevarech, M.3    Papke, R.T.4    Gophna, U.5
  • 47
    • 67149131585 scopus 로고    scopus 로고
    • Archaeal diversity and the prevalence of crenarchaeota in salt marsh sediments
    • Nelson KA, Moin NS, Bernhard AE. (2009). Archaeal diversity and the prevalence of Crenarchaeota in salt marsh sediments. Appl Environ Microbiol 75: 4211-4215.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 4211-4215
    • Nelson, K.A.1    Moin, N.S.2    Bernhard, A.E.3
  • 48
    • 84869756836 scopus 로고    scopus 로고
    • Combined analyses of the its loci and the corresponding 16s rrna genes reveal high micro-And macrodiversity of sar11 populations in the red sea
    • Ngugi DK, Stingl U. (2012). C ombined analyses of the ITS Loci and the corresponding 16S rRNA genes reveal high micro-And macrodiversity of SAR11 populations in the Red Sea. PLoS One 7: e50274.
    • (2012) PLoS One , vol.7 , pp. e50274
    • Ngugi, D.K.1    Stingl, U.2
  • 49
    • 57449104373 scopus 로고    scopus 로고
    • Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments
    • Oda Y, Larimer FW, Chain PSG, Malfatti S, S hin MV, Vergez LM et al. (2008). Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments. Proc Natl Acad Sci USA 105: 18543-18548.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 18543-18548
    • Oda, Y.1    Larimer, F.W.2    Chain, P.S.G.3    Malfatti, S.4    Shin, M.V.5    Vergez, L.M.6
  • 50
    • 0033022073 scopus 로고    scopus 로고
    • Bio energetic aspects of halophilism
    • Oren A. (1999). Bio energetic aspects of halophilism. Microbiol Mol Biol Rev 63: 334-348.
    • (1999) Microbiol Mol Biol Rev , vol.63 , pp. 334-348
    • Oren, A.1
  • 51
    • 79952209867 scopus 로고    scopus 로고
    • Thermodynamic limits to microbial life at high salt concentrations
    • Oren A. (2011). Thermodynamic limits to microbial life at high salt concentrations. Environ Microbiol 13: 1908-1923.
    • (2011) Environ Microbiol , vol.13 , pp. 1908-1923
    • Oren, A.1
  • 52
    • 84890305097 scopus 로고    scopus 로고
    • Life at high salt concentrations, intracellular kcl concentrations, and acidic proteomes
    • Oren A.(2013). Life at high salt concentrations, intracellular KCl concentrations, and acidic proteomes. Front in Microbiol 4: 1-6.
    • (2013) Front in Microbiol , vol.4 , pp. 1-6
    • Oren, A.1
  • 53
    • 0012599141 scopus 로고    scopus 로고
    • Intracellular ion an d organic solute concentrations of the extremely halophilic bacterium salinibacter ruber
    • Oren A,Heldal M,Norland S,Galinski EA. 2002 Intracellular ion an d organic solute concentrations of the extremely halophilic bacterium Salinibacter ruber Extremophiles 6, 491-498.
    • (2002) Extremophiles , vol.6 , pp. 491-498
    • Oren, A.1    Heldal, M.2    Norland, S.3    Galinski, E.A.4
  • 54
    • 0033754312 scopus 로고    scopus 로고
    • Marine planktonic archaea take up amino acids
    • Ouverney CC, Fuhrman JA. (2000). Marine planktonic archaea take up amino acids. Appl Environ Microbiol 66: 4829-4833.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4829-4833
    • Ouverney, C.C.1    Fuhrman, J.A.2
  • 55
    • 78649703098 scopus 로고    scopus 로고
    • Cultivation of autotrophic ammoniaoxidizing archaea from marine sediments in coculture with sulfur-oxi dizing bacteria
    • Park B-J, Park S-J, Yoon D-N, Schouten S, Damste JSS, Rhee S-K. (2010). Cultivation of autotrophic ammoniaoxidizing Archaea from marine sediments in coculture with sulfur-oxi dizing Bacteria. Appl Environ Microbiol 76: 7575-7587.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 7575-7587
    • Park, B.-J.1    Park, S.-J.2    Yoon, D.-N.3    Schouten, S.4    Damste, J.S.S.5    Rhee, S.-K.6
  • 56
    • 84870692770 scopus 로고    scopus 로고
    • Draft genome sequence of an ammoniaoxidizing archaeon,'candidatus nit rosopumilus sediminis' ar2, from svalbard in the arctic circle
    • Park S-J, Kim J-G, Jung M-Y, Kim S-J, Cha I-T, Ghai R et al. (2012a). Draft genome sequence of an ammoniaoxidizing archaeon,'Candidatus Nit rosopumilus sediminis' AR2, from Svalbard in the Arctic Circle. J Bacteriol 194: 6948-6949.
    • (2012) J Bacteriol , vol.194 , pp. 6948-6949
    • Park, S.-J.1    Kim, J.-G.2    Jung, M.-Y.3    Kim, S.-J.4    Cha, I.-T.5    Ghai, R.6
  • 57
    • 84870692770 scopus 로고    scopus 로고
    • Draft genome sequence of an ammoniaoxidizing archaeon, ' candidatus nitrosopumilus koreensis' ar1, from marine sediment
    • Park S-J, Kim J-G, Jung M-Y, Kim S-J, Cha I-T, Kwon K et al. (2012b). Draft genome sequence of an ammoniaoxidizing archaeon, ' Candidatus Nitrosopumilus koreensis' AR1, from marine sediment. J Bacteriol 194: 6940-6941.
    • (2012) J Bacteriol , vol.194 , pp. 6940-6941
    • Park, S.-J.1    Kim, J.-G.2    Jung, M.-Y.3    Kim, S.-J.4    Cha, I.-T.5    Kwon, K.6
  • 59
    • 47149088683 scopus 로고    scopus 로고
    • Molecular signature of hypersaline ada ptation: Insights from genome and proteome composition of halophilic prokaryotes
    • Paul S, Bag SK, Das S, Harvill ET, Dutta C. (2008). Molecular signature of hypersaline ada ptation: insights from genome and proteome composition of halophilic prokaryotes. Genome Biol 9: R70.
    • (2008) Genome Biol , vol.9 , pp. R70
    • Paul, S.1    Bag, S.K.2    Das, S.3    Harvill, E.T.4    Dutta, C.5
  • 61
    • 84867901720 scopus 로고    scopus 로고
    • Archaeal and bacterial ammonia-oxidizers in soil: The quest for niche specialisation and differentiation
    • Prosser JI, Nicol GW. (2012). Archaeal and bacterial ammonia-oxidizers in soil: the quest for niche specialisation and differentiation. Trends Microbiol 20: 523-531.
    • (2012) Trends Microbiol , vol.20 , pp. 523-531
    • Prosser, J.I.1    Nicol, G.W.2
  • 63
    • 84899507119 scopus 로고    scopus 로고
    • Obtaining genomes from uncultivated environmental microorganisms using facs-based single-cell genomics
    • Rinke C, Lee J, Nath N, Goudeau D, Th ompson B, Poulton N et al. (2014). Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics. Nat Protocol 9: 1038-1048.
    • (2014) Nat Protocol , vol.9 , pp. 1038-1048
    • Rinke, C.1    Lee, J.2    Nath, N.3    Goudeau, D.4    Thompson, B.5    Poulton, N.6
  • 64
    • 33947238287 scopus 로고    scopus 로고
    • The sorcerer ii global ocean sampling expedition: Northwest atlantic through eastern tropical pacific
    • Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S et al. (2007). The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific. PLoS Biol 5: e77.
    • (2007) PLoS Biol , vol.5 , pp. e77
    • Rusch, D.B.1    Halpern, A.L.2    Sutton, G.3    Heidelberg, K.B.4    Williamson, S.5    Yooseph, S.6
  • 65
  • 66
    • 0035651017 scopus 로고    scopus 로고
    • Microbial communities in the chemocline of a hypersaline deep-sea basin (urania basin, mediterranean sea
    • Sass AM, Sass H, Coolen MJ, Cypionka H, Overmann J. (2001). Microbial communities in the chemocline of a hypersaline deep-sea basin (Urania basin, Mediterranean Sea). Appl Environ Microbiol 67: 5392-5402.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 5392-5402
    • Sass, A.M.1    Sass, H.2    Coolen, M.J.3    Cypionka, H.4    Overmann, J.5
  • 67
    • 34948832666 scopus 로고    scopus 로고
    • Salinity-dependent switching of osmolyte strategies in a moderately halophilic bacterium: Glutamate induces proline biosynthesis in halobacillus halophilus
    • Saum SH, Muller V. (2007). Salinity-dependent switching of osmolyte strategies in a moderately halophilic bacterium: glutamate induces proline biosynthesis in Halobacillus halophilus. J Bacteriol 189 : 6968-6975.
    • (2007) J Bacteriol , vol.189 , pp. 6968-6975
    • Saum, S.H.1    Muller, V.2
  • 68
    • 0141890643 scopus 로고    scopus 로고
    • High-resolution methane profiles across anoxic brine-seawater boundaries in the atlantis-ii di scovery, and kebrit deeps (red sea
    • Schmidt M, Botz R, Faber E, Schmitt M, Poggenburg J, Garbe-Schönberg D et al. (2003). High-resolution methane profiles across anoxic brine-seawater boundaries in the Atlantis-II, Di scovery, and Kebrit Deeps (Red Sea). Chem Geol 200: 359-375.
    • (2003) Chem Geol , vol.200 , pp. 359-375
    • Schmidt, M.1    Botz, R.2    Faber, E.3    Schmitt, M.4    Poggenburg, J.5    Garbe-Schönberg, D.6
  • 69
    • 84903376499 scopus 로고    scopus 로고
    • Crenarchaeal heterotrophy in salt marsh sediments
    • Seyler LM, McGuiness LM, Kerkhof LJ. (2014). Crenarchaeal heterotrophy in salt marsh sediments. ISME J 8: 1534-1543.
    • (2014) ISME J , vol.8 , pp. 1534-1543
    • Seyler, L.M.1    McGuiness, L.M.2    Kerkhof, L.J.3
  • 70
    • 84870486180 scopus 로고    scopus 로고
    • The genome of the ammoniaoxidizing candidatus nitrososphaera gargensis: Insights into metabolic versatility and environmental adaptations
    • Span g A, Poehlein A, Offre P, Zumbrägel S, Haider S, Rychlik N et al. (2012). The genome of the ammoniaoxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations. Environ Microbiol 14: 3122-3145.
    • (2012) Environ Microbiol , vol.14 , pp. 3122-3145
    • Spang, A.1    Poehlein, A.2    Offre, P.3    Zumbrägel, S.4    Haider, S.5    Rychlik, N.6
  • 71
    • 84872250001 scopus 로고    scopus 로고
    • Physiology and diversity of ammonia-oxidizing archaea
    • Stahl DA, de la Torre JR. (2012). Physiology and diversity of ammonia-oxidizing Archaea. Annu Rev Microbiol 66: 83-101.
    • (2012) Annu Rev Microbiol , vol.66 , pp. 83-101
    • Stahl, D.A.1    De La Torre, J.R.2
  • 72
    • 84868098266 scopus 로고    scopus 로고
    • Single cell genomics: An individual look at microbes
    • Stepanauskas R. (2012). Single cell genomics: an individual look at microbes. Curr Opin Microbiol 15: 613-620.
    • (2012) Curr Opin Microbiol , vol.15 , pp. 613-620
    • Stepanauskas, R.1
  • 73
    • 75749088428 scopus 로고    scopus 로고
    • Archaeal an d bacterial communities respond differently to environmental gradients in anoxic sediments of a california hypersaline lake, the salton sea
    • Swan BK, Ehrhardt CJ, Reifel KM, Moreno LI, Valentine DL. (2010). Archaeal an d Bacterial communities respond differently to environmental gradients in anoxic sediments of a California Hypersaline Lake, the Salton Sea. Appl Environ Microbiol 76: 757-768.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 757-768
    • Swan, B.K.1    Ehrhardt, C.J.2    Reifel, K.M.3    Moreno, L.I.4    Valentine, D.L.5
  • 74
    • 84860528128 scopus 로고    scopus 로고
    • Vertical, horizontal, and temporal changes in temperature in the atlantis ii and discovery hot brine pools, red sea
    • Swift SA, Bower AS, Schmitt RW. (2012).Vertical, horizontal, and temporal changes in temperature in the Atlantis II and Discovery hot brine pools, Red Sea. Deep Sea Res Part I Oceanogr Res Pap 64: 118-128.
    • (2012) Deep Sea Res Part i Oceanogr Res Pap , vol.64 , pp. 118-128
    • Swift, S.A.1    Bower, A.S.2    Schmitt, R.W.3
  • 76
    • 32944469326 scopus 로고    scopus 로고
    • Archaeal uptake of enantiomeric amino acids in the meso-And bathypelagic waters of the north atlantic
    • Teira E, Van A ken H, Veth C, Herndl GJ. (2006). Archaeal uptake of enantiomeric amino acids in the meso-And bathypelagic waters of the North Atlantic. Limnol Oceanogr 51: 60-69.
    • (2006) Limnol Oceanogr , vol.51 , pp. 60-69
    • Teira, E.1    Van, A.2    Ken, H.3    Veth, C.4    Herndl, G.J.5
  • 77
    • 25444524604 scopus 로고    scopus 로고
    • Genome analysis of multiple pathogenic isolates of streptococcus agalactiae: Implications for the microbial ' pan-genome
    • Tettelin H, Masignani V, Cieslewic z MJ, Donati C, Medini D, Ward NL et al. (2005). Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial ' pan-genome'. Proc Natl Acad Sci USA 102: 13950-13955.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 13950-13955
    • Tettelin, H.1    Masignani, V.2    Cieslewicz, M.J.3    Donati, C.4    Medini, D.5    Ward, N.L.6
  • 78
    • 41149093627 scopus 로고    scopus 로고
    • Uncultured archaea in deep marine subsurface sediments: Have we caught them all?
    • Teske A, Sorensen KB. (2008). Uncultured Archaea in deep marine subsurface sediments: have we caught them all? ISME J 2: 3-18.
    • (2008) ISME J , vol.2 , pp. 3-18
    • Teske, A.1    Sorensen, K.B.2
  • 82
    • 38149099894 scopus 로고    scopus 로고
    • Latitudinal trends of crenarchaeota and bacteria in the meso-And bathypelagic water masses of the eastern north atlantic
    • Varela MM, van Aken HM, Sintes E, Herndl GJ. (20 08). Latitudinal trends of Crenarchaeota and Bacteria in the meso-And bathypelagic water masses of the Eastern North Atlantic. Environ Microbiol 10: 110-124.
    • (2008) Environ Microbiol , vol.10 , pp. 110-124
    • Varela, M.M.1    Van Aken, H.M.2    Sintes, E.3    Herndl, G.J.4
  • 83
    • 77952739182 scopus 로고    scopus 로고
    • Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
    • Walker CB, la Torre de JR, Klotz MG, Urakawa H, Pinel N, Arp DJ et al. (2010). Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. Proc Natl Acad Sci USA 107: 8818-8823.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 8818-8823
    • Walker, C.B.1    De La Torre, J.R.2    Klotz, M.G.3    Urakawa, H.4    Pinel, N.5    Arp, D.J.6
  • 84
    • 36849028081 scopus 로고    scopus 로고
    • Primary producing prokaryotic communities of brine, interface and seawater above the halocline of deep anoxic lake l'atalante, eastern medit erranean sea
    • Y akimov MM, La Cono V, Denaro R, D'Auria G, Decembrini F, Timmis KN et al. (2007). Primary producing prokaryotic communities of brine, interface and seawater above the halocline of deep anoxic lake L'Atalante, Eastern Medit erranean Sea. ISME J 1: 743-755.
    • (2007) ISME J , vol.1 , pp. 743-755
    • Akimov, M.M.Y.1    La Cono, V.2    Denaro, R.3    D'Auria, G.4    Decembrini, F.5    Timmis, K.N.6
  • 85
  • 86
    • 0035813128 scopus 로고    scopus 로고
    • Structural integrity of histone h2b in vivo requires the activity of protein l-isoaspartateo-methyltransferase, a putativ e protein repair enzyme
    • Young AL, Carter WG, Doyle HA, Mamula MJ, Aswad DW. (2001). Structural integrity of histone H2B in vivo requires the activity of protein L-isoaspartateO-methyltransferase, a putativ e protein repair enzyme. J Biol Chem 276: 37161-37165.
    • (2001) J Biol Chem , vol.276 , pp. 37161-37165
    • Young, A.L.1    Carter, W.G.2    Doyle, H.A.3    Mamula, M.J.4    Aswad, D.W.5
  • 87
    • 79958755814 scopus 로고    scopus 로고
    • The stimulatory effect of cacl2, nacl and nh4no3 salts on the ssdna-binding activity of reca depends on nu cleotide cofactor and buffer ph
    • Ziemienowicz A, Rahavi SMR, Kovalchuk I. (2011). The stimulatory effect of CaCl2, NaCl and NH4NO3 salts on the ssDNA-binding activity of RecA depends on nu cleotide cofactor and buffer pH. BMB Rep 44: 341-346.
    • (2011) BMB Rep , vol.44 , pp. 341-346
    • Ziemienowicz, A.1    Rahavi, S.M.R.2    Kovalchuk, I.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.