메뉴 건너뛰기




Volumn 530, Issue 7590, 2016, Pages 331-335

The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

(35)  Olsen, Jeanine L a   Rouzé, Pierre b   Verhelst, Bram b   Lin, Yao Cheng b   Bayer, Till b   Collen, Jonas c   Dattolo, Emanuela d   De Paoli, Emanuele e   Dittami, Simon f   Maumus, Florian d   Michel, Gurvan d   Kersting, Anna d   Lauritano, Chiara g   Lohaus, Rolf d   Töpel, Mats h,i   Tonon, Thierry e   Vanneste, Kevin b   Amirebrahimi, Mojgan j   Brakel, Janina d   Boström, Christoffer b   more..

d CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON DIOXIDE; ETHYLENE; GALACTAN; ION; OXYGEN; PECTIN; PHYTOCHROME; POLYSACCHARIDE; TERPENOID; ETHYLENE DERIVATIVE; SEA WATER; TERPENE;

EID: 84949269317     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature16548     Document Type: Article
Times cited : (388)

References (87)
  • 1
    • 15144361081 scopus 로고    scopus 로고
    • Phylogenetic studies in Alismatidae II: Evolution of marine angiosperms (seagrasses) and hydrophily
    • Les, D. H., Cleland, M. A., Waycott, M. Phylogenetic studies in Alismatidae, II: evolution of marine angiosperms (seagrasses) and hydrophily. Syst. Bot. 22, 443-463 (1997).
    • (1997) Syst. Bot. , vol.22 , pp. 443-463
    • Les, D.H.1    Cleland, M.A.2    Waycott, M.3
  • 3
    • 77955857695 scopus 로고    scopus 로고
    • Stomata: Key players in the earth system, past and present
    • Berry, J. A., Beerling, D. J., Franks, P. J. Stomata: key players in the earth system, past and present. Curr. Opin. Plant Biol. 13, 232-239 (2010).
    • (2010) Curr. Opin. Plant Biol. , vol.13 , pp. 232-239
    • Berry, J.A.1    Beerling, D.J.2    Franks, P.J.3
  • 5
    • 82755190651 scopus 로고    scopus 로고
    • Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species
    • Franssen, S. U. et al. Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species. Proc. Natl Acad. Sci. USA 108, 19276-19281 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 19276-19281
    • Franssen, S.U.1
  • 6
    • 84886425680 scopus 로고    scopus 로고
    • Establishing research strategies, methodologies and technologies to link genomics and proteomics to seagrass productivity, community metabolism, and ecosystem carbon fluxes
    • Mazzuca, S. et al. Establishing research strategies, methodologies and technologies to link genomics and proteomics to seagrass productivity, community metabolism, and ecosystem carbon fluxes. Front. Plant Sci. 4, 1-19 (2013).
    • (2013) Front. Plant Sci. , vol.4 , pp. 1-19
    • Mazzuca, S.1
  • 7
    • 77952573040 scopus 로고    scopus 로고
    • Will the oceans help feed humanity
    • Duarte, C. M. et al. Will the oceans help feed humanity? Bioscience 59, 967-976 (2009).
    • (2009) Bioscience , vol.59 , pp. 967-976
    • Duarte, C.M.1
  • 8
    • 0030618171 scopus 로고    scopus 로고
    • The value of the world's ecosystem services and natural capital
    • Costanza, R. et al. The value of the world's ecosystem services and natural capital. Nature 387, 253-260 (1997).
    • (1997) Nature , vol.387 , pp. 253-260
    • Costanza, R.1
  • 9
    • 84863331735 scopus 로고    scopus 로고
    • Seagrass ecosystems as a globally significant carbon stock
    • Fourqurean, J. W. et al. Seagrass ecosystems as a globally significant carbon stock. Nature Geosci. 5, 505-509 (2012).
    • (2012) Nature Geosci. , vol.5 , pp. 505-509
    • Fourqurean, J.W.1
  • 11
    • 84894377865 scopus 로고    scopus 로고
    • The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle
    • Wang, W. et al. The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle. Nature Commun. 5, 1-13 (2014).
    • (2014) Nature Commun. , vol.5 , pp. 1-13
    • Wang, W.1
  • 12
    • 84899487011 scopus 로고    scopus 로고
    • Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs
    • Chavez Montes, R. A. et al. Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs. Nature Commun. 5, 1-15 (2014).
    • (2014) Nature Commun. , vol.5 , pp. 1-15
    • Chavez Montes, R.A.1
  • 13
    • 84902983212 scopus 로고    scopus 로고
    • Tangled up in two: A burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution
    • Vanneste, K., Maere, S., Van de Peer, Y. Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution. Philos. Trans. R. Soc. B Biol. Sci. 369, 20130353 (2014).
    • (2014) Philos. Trans. R. Soc. B Biol. Sci. , vol.369 , pp. 20130353
    • Vanneste, K.1    Maere, S.2    Van De Peer, Y.3
  • 14
    • 84864561819 scopus 로고    scopus 로고
    • Global history of the ancient monocot family Araceae inferred with models accounting for past continental positions and previous ranges based on fossils
    • Nauheimer, L., Metzler, D., Renner, S. S. Global history of the ancient monocot family Araceae inferred with models accounting for past continental positions and previous ranges based on fossils. New Phytol. 195, 938-950 (2012).
    • (2012) New Phytol. , vol.195 , pp. 938-950
    • Nauheimer, L.1    Metzler, D.2    Renner, S.S.3
  • 15
    • 84924405567 scopus 로고    scopus 로고
    • Genome-wide survejy of the seagrass Zostera muelleri suggests modification of the ethylene signalling network
    • Golicz, A. A. et al. Genome-wide survejy of the seagrass Zostera muelleri suggests modification of the ethylene signalling network. J. Exp. Bot. (2015).
    • (2015) J. Exp. Bot.
    • Golicz, A.A.1
  • 17
    • 34548184126 scopus 로고    scopus 로고
    • Seagrass-salinity interactions: Physiological mechanisms used by submersed marine angiosperms for a life at sea
    • Touchette, B. W. Seagrass-salinity interactions: physiological mechanisms used by submersed marine angiosperms for a life at sea. J. Exp. Mar. Biol. Ecol. 350, 194-215 (2007).
    • (2007) J. Exp. Mar. Biol. Ecol. , vol.350 , pp. 194-215
    • Touchette, B.W.1
  • 18
    • 79955571582 scopus 로고    scopus 로고
    • Evolution and diversity of plant cell walls: From algae to flowering plants
    • Popper, Z. A. et al. Evolution and diversity of plant cell walls: from algae to flowering plants. Annu. Rev. Plant Biol. 62, 567-590 (2011).
    • (2011) Annu. Rev. Plant Biol. , vol.62 , pp. 567-590
    • Popper, Z.A.1
  • 19
    • 77956272755 scopus 로고    scopus 로고
    • The cell wall polysaccharide metabolism of the brown alga Ectocarpus siliculosus: Insights into the evolution of extracellular matrix polysaccharides in eukaryotes
    • Michel, G., Tonon, T., Scornet, D., Cock, J. M., Kloareg, B. The cell wall polysaccharide metabolism of the brown alga Ectocarpus siliculosus: insights into the evolution of extracellular matrix polysaccharides in eukaryotes. New Phytol. 188, 82-97 (2010).
    • (2010) New Phytol. , vol.188 , pp. 82-97
    • Michel, G.1    Tonon, T.2    Scornet, D.3    Cock, J.M.4    Kloareg, B.5
  • 20
    • 84875514054 scopus 로고    scopus 로고
    • Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida
    • Collen, J. et al. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Proc. Natl Acad. Sci. USA 110, 5247-5252 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 5247-5252
    • Collen, J.1
  • 21
    • 8844275956 scopus 로고    scopus 로고
    • Sulfatases: Structure, mechanism, biological activity, inhibition, and synthetic utility
    • Hanson, S. R., Best, M. D., Wong, C. H. Sulfatases: structure, mechanism, biological activity, inhibition, and synthetic utility. Angew. Chem. Int. Ed. 43, 5736-5763 (2004).
    • (2004) Angew. Chem. Int. Ed. , vol.43 , pp. 5736-5763
    • Hanson, S.R.1    Best, M.D.2    Wong, C.H.3
  • 23
    • 0000246786 scopus 로고
    • Flowering pollinations and fruiting in Zostera marina
    • De Cock, A. W. Flowering, pollinations and fruiting in Zostera marina L. Aquat. Bot. 9, 201-220 (1980).
    • (1980) L. Aquat. Bot. , vol.9 , pp. 201-220
    • De Cock, A.W.1
  • 24
    • 84958961466 scopus 로고    scopus 로고
    • eds Wilkin, P., Mayo, S. J. Cambridge Univ. Press
    • Furness, C. A. in Early Events in Monocot Evolution (eds Wilkin, P., Mayo, S. J.) 1-22 (Cambridge Univ. Press, 2013).
    • (2013) Early Events in Monocot Evolution , pp. 1-22
    • Furness, C.A.1
  • 26
    • 33845533181 scopus 로고    scopus 로고
    • A global crisis for seagrass ecosystems
    • Orth, R. J. et al. A global crisis for seagrass ecosystems. Bioscience 56, 987-996 (2006).
    • (2006) Bioscience , vol.56 , pp. 987-996
    • Orth, R.J.1
  • 27
    • 68149141466 scopus 로고    scopus 로고
    • Accelerating loss of seagrasses across the globe threatens coastal ecosystems
    • Waycott, M. et al. Accelerating loss of seagrasses across the globe threatens coastal ecosystems. Proc. Natl Acad. Sci. USA 106, 12377-12381 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 12377-12381
    • Waycott, M.1
  • 28
    • 84890661643 scopus 로고    scopus 로고
    • Molecular indicators of chronic seagrass stress: A new era in the management of seagrass ecosystems
    • Macreadie, P. I., Schliepl, M. T., Rasheed, M. A., Chartrand, K. M., Ralph, P. J. Molecular indicators of chronic seagrass stress: a new era in the management of seagrass ecosystems? Ecol. Indic. 38, 279-281 (2014).
    • (2014) Ecol Indic. , vol.38 , pp. 279-281
    • MacReadie, P.I.1    Schliepl, M.T.2    Rasheed, M.A.3    Chartrand, K.M.4    Ralph, P.J.5
  • 29
    • 84905647470 scopus 로고    scopus 로고
    • Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary
    • Vanneste, K., Baele, G., Maere, S., Van de Peer, Y. Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary. Genome Res. 24, 1334-1347 (2014).
    • (2014) Genome Res , vol.24 , pp. 1334-1347
    • Vanneste, K.1    Baele, G.2    Maere, S.3    Van De Peer, Y.4
  • 30
    • 84880263623 scopus 로고    scopus 로고
    • Eelgrass Zostera marina populations in northern Norwegian fjords are genetically isolated and diverse
    • Olsen, J. L. et al. Eelgrass Zostera marina populations in northern Norwegian fjords are genetically isolated and diverse. Mar. Ecol. Prog. Ser. 486, 121-132 (2013).
    • (2013) Mar. Ecol. Prog. Ser. , vol.486 , pp. 121-132
    • Olsen, J.L.1
  • 32
    • 0035843606 scopus 로고    scopus 로고
    • Chromosome numbers of the Australian Zosteraceae
    • Kuo, J. Chromosome numbers of the Australian Zosteraceae. Plant Syst. Evol. 226, 155-163 (2001).
    • (2001) Plant Syst. Evol. , vol.226 , pp. 155-163
    • Kuo, J.1
  • 33
    • 84863448062 scopus 로고    scopus 로고
    • Widespread genetic mosaicism in the marine angiosperm Zostera marina is correlated with clonal reproduction
    • Reusch, T. B. H., Bostrom, C. Widespread genetic mosaicism in the marine angiosperm Zostera marina is correlated with clonal reproduction. Evol. Ecol. 25, 899-913 (2010).
    • (2010) Evol. Ecol. , vol.25 , pp. 899-913
    • Reusch, T.B.H.1    Bostrom, C.2
  • 34
    • 0000479431 scopus 로고
    • Isolation of plant DNA from fresh tissue
    • Doyle, J. J., Doyle, J. L. Isolation of plant DNA from fresh tissue. Focus 12, 13-15 (1990).
    • (1990) Focus , vol.12 , pp. 13-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 35
    • 0037267048 scopus 로고    scopus 로고
    • Whole-genome sequence assembly for mammalian genomes: Arachne 2
    • Jaffe, D. B. et al. Whole-genome sequence assembly for mammalian genomes: Arachne 2. Genome Res. 13, 91-96 (2003).
    • (2003) Genome Res. , vol.13 , pp. 91-96
    • Jaffe, D.B.1
  • 37
    • 84899436957 scopus 로고    scopus 로고
    • Deep investigation of Arabidopsis thaliana junk DNA reveals a continuum between repetitive elements and genomic dark matter
    • Maumus, F., Quesneville, H. Deep investigation of Arabidopsis thaliana junk DNA reveals a continuum between repetitive elements and genomic dark matter. PLoS ONE 9, e94101 (2014).
    • (2014) PLoS ONE , vol.9 , pp. e94101
    • Maumus, F.1    Quesneville, H.2
  • 38
    • 79551624472 scopus 로고    scopus 로고
    • Considering transposable element diversification in de novo annotation approaches
    • Flutre, T., Duprat, E., Feuillet, C., Quesneville, H. Considering transposable element diversification in de novo annotation approaches. PLoS ONE 6, e16526 (2011).
    • (2011) PLoS ONE , vol.6 , pp. e16526
    • Flutre, T.1    Duprat, E.2    Feuillet, C.3    Quesneville, H.4
  • 39
    • 28844444029 scopus 로고    scopus 로고
    • Combined evidence annotation of transposable elements in genome sequences
    • Quesneville, H. et al. Combined evidence annotation of transposable elements in genome sequences. PLOS Comput. Biol. 1, e22 (2005).
    • (2005) PLOS Comput. Biol. , vol.1 , pp. e22
    • Quesneville, H.1
  • 40
    • 84900421805 scopus 로고    scopus 로고
    • PASTEC: An automatic transposable element classification tool
    • Hoede, C. et al. PASTEC: an automatic transposable element classification tool. PLoS ONE 9, e91929 (2014).
    • (2014) PLoS ONE , vol.9 , pp. e91929
    • Hoede, C.1
  • 41
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr, M. G. et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnol. 29, 644-652 (2011).
    • (2011) Nature Biotechnol , vol.29 , pp. 644-652
    • Grabherr, M.G.1
  • 42
    • 61449124151 scopus 로고    scopus 로고
    • FrameDP: Sensitive peptide detection on noisy matured sequences
    • Gouzy, J., Carrere, S., Schiex, T. FrameDP: sensitive peptide detection on noisy matured sequences. Bioinformatics 25, 670-671 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 670-671
    • Gouzy, J.1    Carrere, S.2    Schiex, T.3
  • 43
    • 79961123152 scopus 로고    scopus 로고
    • RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome
    • Li, B., Dewey, C. N. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12, 323 (2011).
    • (2011) BMC Bioinformatics , vol.12 , pp. 323
    • Li, B.1    Dewey, C.N.2
  • 44
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li, W., Godzik, A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22, 1658-1659 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 45
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell, C., Pachter, L., Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 46
    • 33846689706 scopus 로고    scopus 로고
    • Using GOstats to test gene lists for GO term association
    • Falcon, S., Gentleman, R. Using GOstats to test gene lists for GO term association. Bioinformatics 23, 257-258 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 257-258
    • Falcon, S.1    Gentleman, R.2
  • 47
    • 73649133268 scopus 로고    scopus 로고
    • A genome-wide characterization of microRNA genes in maize
    • Zhang, L. et al. A genome-wide characterization of microRNA genes in maize. PLoS Genet. 5, e1000716 (2009).
    • (2009) PLoS Genet. , vol.5 , pp. e1000716
    • Zhang, L.1
  • 48
    • 53749083993 scopus 로고    scopus 로고
    • SeqMap: Mapping massive amount of oligonucleotides to the genome
    • Jiang, H., Wong, W. H. SeqMap: mapping massive amount of oligonucleotides to the genome. Bioinformatics 24, 2395-2396 (2008).
    • (2008) Bioinformatics , vol.24 , pp. 2395-2396
    • Jiang, H.1    Wong, W.H.2
  • 49
    • 60149090481 scopus 로고    scopus 로고
    • Criteria for annotation of plant microRNAs
    • Meyers, B. C. et al. Criteria for annotation of plant microRNAs. Plant Cell 20, 3186-3190 (2008).
    • (2008) Plant Cell , vol.20 , pp. 3186-3190
    • Meyers, B.C.1
  • 50
    • 58049220318 scopus 로고    scopus 로고
    • CleaveLand: A pipeline for using degradome data to find cleaved small RNA targets
    • Addo-Quaye, C., Miller, W., Axtell, M. J. CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. Bioinformatics 25, 130-131 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 130-131
    • Addo-Quaye, C.1    Miller, W.2    Axtell, M.J.3
  • 51
    • 17444380495 scopus 로고    scopus 로고
    • SpliceMachine: Predicting splice sites from high-dimensional local context representations
    • Degroeve, S., Saeys, Y., De Baets, B., Rouze, P., Van de Peer, Y. SpliceMachine: predicting splice sites from high-dimensional local context representations. Bioinformatics 21, 1332-1338 (2005).
    • (2005) Bioinformatics , vol.21 , pp. 1332-1338
    • Degroeve, S.1    Saeys, Y.2    De Baets, B.3    Rouze, P.4    Van De Peer, Y.5
  • 52
    • 66249109710 scopus 로고    scopus 로고
    • Genome annotation in plants and fungi: EuGene as a model platform
    • Foissac, S. et al. Genome annotation in plants and fungi: EuGene as a model platform. Curr. Bioinformatics 3, 87-97 (2008).
    • (2008) Curr. Bioinformatics , vol.3 , pp. 87-97
    • Foissac, S.1
  • 53
    • 84856569514 scopus 로고    scopus 로고
    • Dissecting plant genomes with the PLAZA comparative genomics platform
    • Van Bel, M. et al. Dissecting plant genomes with the PLAZA comparative genomics platform. Plant Physiol. 158, 590-600 (2012).
    • (2012) Plant Physiol. , vol.158 , pp. 590-600
    • Van Bel, M.1
  • 55
    • 57149099395 scopus 로고    scopus 로고
    • Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
    • Ter-Hovhannisyan, V., Lomsadze, A., Chernoff, Y. O., Borodovsky, M. Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. Genome Res. 18, 1979-1990 (2008).
    • (2008) Genome Res. , vol.18 , pp. 1979-1990
    • Ter-Hovhannisyan, V.1    Lomsadze, A.2    Chernoff, Y.O.3    Borodovsky, M.4
  • 56
    • 33748674197 scopus 로고    scopus 로고
    • AUGUSTUS at EGASP: Using EST, protein and genomic alignments for improved gene prediction in the human genome
    • Stanke, M., Tzvetkova, A., Morgenstern, B. AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome. Genome Biol. 7, S11 (2006).
    • (2006) Genome Biol. , vol.7 , pp. S11
    • Stanke, M.1    Tzvetkova, A.2    Morgenstern, B.3
  • 57
    • 0030854739 scopus 로고    scopus 로고
    • R. TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T. M., Eddy, S. R. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 955-964 (1997).
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.2
  • 58
    • 84874266637 scopus 로고    scopus 로고
    • Rfam 11.0: 10 years of RNA families
    • Burge, S. W. et al. Rfam 11.0: 10 years of RNA families. Nucleic Acids Res. 41, D226-D232 (2013).
    • (2013) Nucleic Acids Res. , vol.41 , pp. D226-D232
    • Burge, S.W.1
  • 60
    • 84946074739 scopus 로고    scopus 로고
    • The InterPro protein families database: The classification resource after 15 years
    • Mitchell, A. et al. The InterPro protein families database: the classification resource after 15 years. Nucleic Acids Res. 43, D213-D221 (2015).
    • (2015) Nucleic Acids Res. , vol.43 , pp. D213-D221
    • Mitchell, A.1
  • 61
    • 84946069451 scopus 로고    scopus 로고
    • UniProt: A hub for protein information
    • The UniProt Consortium
    • The UniProt Consortium. UniProt: a hub for protein information. Nucleic Acids Res. 43, D204-D212 (2015).
    • (2015) Nucleic Acids Res. , vol.43 , pp. D204-D212
  • 62
    • 84871822072 scopus 로고    scopus 로고
    • Inference of genome duplications from age distributions revisited
    • Vanneste, K., Van de Peer, Y., Maere, S. Inference of genome duplications from age distributions revisited. Mol. Biol. Evol. 30, 177-190 (2013).
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 177-190
    • Vanneste, K.1    Van De Peer, Y.2    Maere, S.3
  • 63
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • Goldman, N., Yang, Z. A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11, 725-736 (1994).
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 64
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang, Z. PAML 4: Phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24, 1586-1591 (2007).
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 65
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximumlikelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon, S. et al. New algorithms and methods to estimate maximumlikelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59, 307-321 (2010).
    • (2010) Syst. Biol. , vol.59 , pp. 307-321
    • Guindon, S.1
  • 66
    • 84855884044 scopus 로고    scopus 로고
    • I-ADHoRe 3.0-fast and sensitive detection of genomic homology in extremely large data sets
    • Proost, S. et al. i-ADHoRe 3.0-fast and sensitive detection of genomic homology in extremely large data sets. Nucleic Acids Res. 40, e11 (2012).
    • (2012) Nucleic Acids Res , vol.40 , pp. e11
    • Proost, S.1
  • 67
    • 79952598546 scopus 로고    scopus 로고
    • A greedy, graph-based algorithm for the alignment of multiple homologous gene lists
    • Fostier, J. et al. A greedy, graph-based algorithm for the alignment of multiple homologous gene lists. Bioinformatics 27, 749-756 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 749-756
    • Fostier, J.1
  • 68
    • 75549086594 scopus 로고    scopus 로고
    • InParanoid 7: New algorithms and tools for eukaryotic orthology analysis
    • Ostlund, G. et al. InParanoid 7: new algorithms and tools for eukaryotic orthology analysis. Nucleic Acids Res. 38, D196-D203 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. D196-D203
    • Ostlund, G.1
  • 69
    • 84864696893 scopus 로고    scopus 로고
    • The banana (Musa acuminata) genome and the evolution of monocotyledonous plants
    • D'Hont, A. et al. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature 488, 213-217 (2012).
    • (2012) Nature , vol.488 , pp. 213-217
    • D'Hont, A.1
  • 70
    • 84864530626 scopus 로고    scopus 로고
    • 3408070; Bayesian phylogenetics with BEAUti and the BEAST 1.7
    • Drummond, A. J., Suchard, M. A., Xie, D., Rambaut, A. 3408070; Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 29, 1969-1973 (2012).
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 1969-1973
    • Drummond, A.J.1    Suchard, M.A.2    Xie, D.3    Rambaut, A.4
  • 71
    • 70350218974 scopus 로고    scopus 로고
    • An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
    • The Angiosperm Phylogeny Group
    • The Angiosperm Phylogeny Group. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot. J. Linn. Soc. 161, 105-121 (2009).
    • (2009) Bot. J. Linn. Soc. , vol.161 , pp. 105-121
  • 72
    • 0032229391 scopus 로고    scopus 로고
    • A new fossil flower from the Turonian of New Jersey: Dressiantha bicarpellata gen. Et sp. Nov. (Capparales)
    • Gandolfo, M., Nixon, K., Crepet, W. A new fossil flower from the Turonian of New Jersey: Dressiantha bicarpellata gen. et sp. nov. (Capparales). Am. J. Bot. 85, 964-974 (1998).
    • (1998) Am. J. Bot. , vol.85 , pp. 964-974
    • Gandolfo, M.1    Nixon, K.2    Crepet, W.3
  • 74
    • 0032229708 scopus 로고    scopus 로고
    • Fossil Clusiaceae from the late Cretaceous (Turonian) of New Jersey and implications regarding the history of been pollination
    • Crepet, W., Nixon, K. C. Fossil Clusiaceae from the late Cretaceous (Turonian) of New Jersey and implications regarding the history of been pollination. Am. J. Bot. 85, 1122-1133 (1998).
    • (1998) Am. J. Bot. , vol.85 , pp. 1122-1133
    • Crepet, W.1    Nixon, K.C.2
  • 75
    • 84867919296 scopus 로고    scopus 로고
    • Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales
    • Xi, Z. et al. Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales. Proc. Natl Acad. Sci. USA 109, 17519-17524 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 17519-17524
    • Xi, Z.1
  • 78
    • 11144300927 scopus 로고    scopus 로고
    • The age of major monocot groups inferred from 800+ rbcL sequences
    • Janssen, T., Bremer, K. The age of major monocot groups inferred from 800+ rbcL sequences. Bot. J. Linn. Soc. 146, 385-398 (2004).
    • (2004) Bot. J. Linn. Soc. , vol.146 , pp. 385-398
    • Janssen, T.1    Bremer, K.2
  • 79
    • 77950543389 scopus 로고    scopus 로고
    • An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants
    • Smith, S. A., Beaulieu, J. M., Donoghue, M. J. An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants. Proc. Natl Acad. Sci. USA 107, 5897-5902 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 5897-5902
    • Smith, S.A.1    Beaulieu, J.M.2    Donoghue, M.J.3
  • 80
    • 80052346740 scopus 로고    scopus 로고
    • Establishing a time-scale for plant evolution
    • Clarke, J. T., Warnock, R. C., Donoghue, P. C. Establishing a time-scale for plant evolution. New Phytol. 192, 266-301 (2011).
    • (2011) New Phytol , vol.192 , pp. 266-301
    • Clarke, J.T.1    Warnock, R.C.2    Donoghue, P.C.3
  • 81
    • 84555188625 scopus 로고    scopus 로고
    • Calibrated tree priors for relaxed phylogenetics and divergence time estimation
    • Heled, J., Drummond, A. J. Calibrated tree priors for relaxed phylogenetics and divergence time estimation. Syst. Biol. 61, 138-149 (2012).
    • (2012) Syst. Biol. , vol.61 , pp. 138-149
    • Heled, J.1    Drummond, A.J.2
  • 82
    • 84860137835 scopus 로고    scopus 로고
    • MCScanX: A toolkit for detection and evolutionary analysis of gene synteny and collinearity
    • Wang, Y. et al. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res. 40, e49 (2012).
    • (2012) Nucleic Acids Res. , vol.40 , pp. e49
    • Wang, Y.1
  • 83
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • Li, L., Stoeckert, C. J., Roos, D. S. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13, 2178-2189 (2003).
    • (2003) Genome Res , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert, C.J.2    Roos, D.S.3
  • 84
    • 84946061001 scopus 로고    scopus 로고
    • PLAZA 3.0: An access point for plant comparative genomics
    • Proost, S. et al. PLAZA 3.0: an access point for plant comparative genomics. Nucleic Acids Res. 43, D974-D981 (2015).
    • (2015) Nucleic Acids Res , vol.43 , pp. D974-D981
    • Proost, S.1
  • 86
    • 84891854899 scopus 로고    scopus 로고
    • Stomatal development in Arabidopsis
    • Pillitteri, L. J., Dong, J. Stomatal development in Arabidopsis. Arabidopsis Book 11, e0162 (2013).
    • (2013) Arabidopsis Book , vol.11 , pp. e0162
    • Pillitteri, L.J.1    Dong, J.2
  • 87
    • 84878440984 scopus 로고    scopus 로고
    • Sporopollenin biosynthetic enzymes interact and constitute a metabolon localized to the endoplasmic reticulum of tapetum cells
    • Lallemand, B., Erhardt, M., Heitz, T., Legrand, M. Sporopollenin biosynthetic enzymes interact and constitute a metabolon localized to the endoplasmic reticulum of tapetum cells. Plant Physiol. 162, 616-625 (2013).
    • (2013) Plant Physiol. , vol.162 , pp. 616-625
    • Lallemand, B.1    Erhardt, M.2    Heitz, T.3    Legrand, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.