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Volumn 9, Issue 5, 2014, Pages

PASTEC: An automatic transposable element classification tool

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA; TRANSPOSON;

EID: 84900421805     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0091929     Document Type: Article
Times cited : (214)

References (9)
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    • Permal E, Flutre T, Quesneville H (2012) Roadmap for annotating transposable elements in eukaryote genomes. Methods Mol. Biol. 859: 53-68.
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    • Permal, E.1    Flutre, T.2    Quesneville, H.3
  • 3
    • 36549035839 scopus 로고    scopus 로고
    • Discovering and detecting transposable elements in genome sequences
    • DOI 10.1093/bib/bbm048
    • Bergman CM, Quesneville H (2007) Discovering and detecting transposable elements in genome sequences. Brief. Bioinform. 8: 382-392. (Pubitemid 350186918)
    • (2007) Briefings in Bioinformatics , vol.8 , Issue.6 , pp. 382-392
    • Bergman, C.M.1    Quesneville, H.2
  • 4
    • 65549101705 scopus 로고    scopus 로고
    • TEclass: A tool for automated classification of unknown eukaryotic transposable elements
    • Abrusán G, Grundmann N, DeMeester L, Makalowski W (2009) TEclass: a tool for automated classification of unknown eukaryotic transposable elements. Bioinformatics 25: 1329-1330.
    • (2009) Bioinformatics , vol.25 , pp. 1329-1330
    • Abrusán, G.1    Grundmann, N.2    DeMeester, L.3    Makalowski, W.4
  • 5
    • 71749089142 scopus 로고    scopus 로고
    • Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes
    • Feschotte C, Keswani U, Ranganathan N, Guibotsy ML, Levine D (2009) Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes. Genome Biol. Evol. 1: 205-220.
    • (2009) Genome Biol. Evol. , vol.1 , pp. 205-220
    • Feschotte, C.1    Keswani, U.2    Ranganathan, N.3    Guibotsy, M.L.4    Levine, D.5
  • 7
    • 79551624472 scopus 로고    scopus 로고
    • Considering Transposable Element Diversification in De Novo Annotation Approaches
    • FlutreT, Duprat E, Feuillet C, Quesneville H (2011) Considering Transposable Element Diversification in De Novo Annotation Approaches. PLoS ONE 6(1).
    • (2011) PLoS ONE , vol.6 , Issue.1
    • Flutre, T.1    Duprat, E.2    Feuillet, C.3    Quesneville, H.4
  • 8
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • Benson G (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27(2): 573-580.
    • (1999) Nucleic Acids Res. , vol.27 , Issue.2 , pp. 573-580
    • Benson, G.1
  • 9
    • 80055082271 scopus 로고    scopus 로고
    • Accelerated Profile HMM Searches
    • Eddy SR (2011) Accelerated Profile HMM Searches. PLoS Comput. Biol. 7(10).
    • (2011) PLoS Comput. Biol. , vol.7 , Issue.10
    • Eddy, S.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.