-
1
-
-
0036645146
-
MicroRNAs in plants
-
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP (2002) MicroRNAs in plants. Genes Dev 16: 1616-1626.
-
(2002)
Genes Dev
, vol.16
, pp. 1616-1626
-
-
Reinhart, B.J.1
Weinstein, E.G.2
Rhoades, M.W.3
Bartel, B.4
Bartel, D.P.5
-
3
-
-
4944225347
-
Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs
-
Vazquez F, Vaucheret H, Rajagopalan R, Lepers C, Gasciolli V, et al. (2004) Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol Cell 16: 69-79.
-
(2004)
Mol Cell
, vol.16
, pp. 69-79
-
-
Vazquez, F.1
Vaucheret, H.2
Rajagopalan, R.3
Lepers, C.4
Gasciolli, V.5
-
4
-
-
12744261466
-
Computational prediction of miRNAs in Arabidopsis thaliana
-
Adai A, Johnson C, Mlotshwa S, Archer-Evans S, Manocha V, et al. (2005) Computational prediction of miRNAs in Arabidopsis thaliana. Genome Res 15: 78-91.
-
(2005)
Genome Res
, vol.15
, pp. 78-91
-
-
Adai, A.1
Johnson, C.2
Mlotshwa, S.3
Archer-Evans, S.4
Manocha, V.5
-
6
-
-
27744596243
-
Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis
-
Wang JW, Wang LJ, Mao YB, Cai WJ, Xue HW, et al. (2005) Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis. Plant Cell 17: 2204-2216.
-
(2005)
Plant Cell
, vol.17
, pp. 2204-2216
-
-
Wang, J.W.1
Wang, L.J.2
Mao, Y.B.3
Cai, W.J.4
Xue, H.W.5
-
7
-
-
44349155320
-
MicroRNA166 controls root and nodule development in Medicago truncatula
-
Boualem A, Laporte P, Jovanovic M, Laffont C, Plet J, et al. (2008) MicroRNA166 controls root and nodule development in Medicago truncatula. Plant J 54: 876-887.
-
(2008)
Plant J
, vol.54
, pp. 876-887
-
-
Boualem, A.1
Laporte, P.2
Jovanovic, M.3
Laffont, C.4
Plet, J.5
-
8
-
-
33646928308
-
Signalling between the shoot apical meristem and developing lateral organs
-
Golz JF (2006) Signalling between the shoot apical meristem and developing lateral organs. Plant Mol Biol 60: 889-903.
-
(2006)
Plant Mol Biol
, vol.60
, pp. 889-903
-
-
Golz, J.F.1
-
9
-
-
1542377275
-
Spatially restricted microRNA directs leaf polarity through ARGONAUTE1
-
Kidner CA, Martienssen RA (2004) Spatially restricted microRNA directs leaf polarity through ARGONAUTE1. Nature 428: 81-84.
-
(2004)
Nature
, vol.428
, pp. 81-84
-
-
Kidner, C.A.1
Martienssen, R.A.2
-
10
-
-
34250879059
-
Transcriptional, post-transcriptional and posttranslational regulations of gene expression during leaf polarity formation
-
Xu L, Yang L, Huang H (2007) Transcriptional, post-transcriptional and posttranslational regulations of gene expression during leaf polarity formation. Cell Res 17: 512-519.
-
(2007)
Cell Res
, vol.17
, pp. 512-519
-
-
Xu, L.1
Yang, L.2
Huang, H.3
-
11
-
-
34248572741
-
Establishing leaf polarity: The role of small RNAs and positional signals in the shoot apex
-
Chitwood DH, Guo M, Nogueira FT, Timmermans MC (2007) Establishing leaf polarity: the role of small RNAs and positional signals in the shoot apex. Development 134: 813-823.
-
(2007)
Development
, vol.134
, pp. 813-823
-
-
Chitwood, D.H.1
Guo, M.2
Nogueira, F.T.3
Timmermans, M.C.4
-
12
-
-
1642366133
-
A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
-
Chen X (2004) A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 303: 2022-2025.
-
(2004)
Science
, vol.303
, pp. 2022-2025
-
-
Chen, X.1
-
13
-
-
2942697259
-
MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs
-
Mallory AC, Dugas DV, Bartel DP, Bartel B (2004) MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs. Curr Biol 14: 1035-1046.
-
(2004)
Curr Biol
, vol.14
, pp. 1035-1046
-
-
Mallory, A.C.1
Dugas, D.V.2
Bartel, D.P.3
Bartel, B.4
-
14
-
-
33646904757
-
Cell differentiation and organ initiation at the shoot apical meristem
-
Carraro N, Peaucelle A, Laufs P, Traas J (2006) Cell differentiation and organ initiation at the shoot apical meristem. Plant Mol Biol 60: 811-826.
-
(2006)
Plant Mol Biol
, vol.60
, pp. 811-826
-
-
Carraro, N.1
Peaucelle, A.2
Laufs, P.3
Traas, J.4
-
15
-
-
36549014611
-
The maize tasselseed4 microRNA controls sex determination and meristem cell fate by targeting Tasselseed6/indeterminate spikelet1
-
Chuck G, Meeley R, Irish E, Sakai H, Hake S (2007) The maize tasselseed4 microRNA controls sex determination and meristem cell fate by targeting Tasselseed6/indeterminate spikelet1. Nat Genet 39: 1517-1521.
-
(2007)
Nat Genet
, vol.39
, pp. 1517-1521
-
-
Chuck, G.1
Meeley, R.2
Irish, E.3
Sakai, H.4
Hake, S.5
-
16
-
-
60049085100
-
Expression analysis of phytohormone-regulated microRNAs in rice, implying their regulation roles in plant hormone signaling
-
Liu Q, Zhang YC, Wang CY, Luo YC, Huang QJ, et al. (2009) Expression analysis of phytohormone-regulated microRNAs in rice, implying their regulation roles in plant hormone signaling. FEBS Lett 583: 723-728.
-
(2009)
FEBS Lett
, vol.583
, pp. 723-728
-
-
Liu, Q.1
Zhang, Y.C.2
Wang, C.Y.3
Luo, Y.C.4
Huang, Q.J.5
-
17
-
-
27844526222
-
A miRNA involved in phosphate-starvation response in Arabidopsis
-
Fujii H, Chiou TJ, Lin SI, Aung K, Zhu JK (2005) A miRNA involved in phosphate-starvation response in Arabidopsis. Curr Biol 15: 2038-2043.
-
(2005)
Curr Biol
, vol.15
, pp. 2038-2043
-
-
Fujii, H.1
Chiou, T.J.2
Lin, S.I.3
Aung, K.4
Zhu, J.K.5
-
18
-
-
67649173027
-
The role of microRNAs in copper and cadmium homeostasis
-
Ding YF, Zhu C (2009) The role of microRNAs in copper and cadmium homeostasis. Biochem Biophys Res Commun 386: 6-10.
-
(2009)
Biochem Biophys Res Commun
, vol.386
, pp. 6-10
-
-
Ding, Y.F.1
Zhu, C.2
-
20
-
-
33846537402
-
Identification of drought-induced microRNAs in rice
-
Zhao B, Liang R, Ge L, Li W, Xiao H, et al. (2007) Identification of drought-induced microRNAs in rice. Biochem Biophys Res Commun 354: 585-590.
-
(2007)
Biochem Biophys Res Commun
, vol.354
, pp. 585-590
-
-
Zhao, B.1
Liang, R.2
Ge, L.3
Li, W.4
Xiao, H.5
-
21
-
-
47249095055
-
Stress-responsive microRNAs in Populus
-
Lu S, Sun YH, Chiang VL (2008) Stress-responsive microRNAs in Populus. Plant J 55: 131-151.
-
(2008)
Plant J
, vol.55
, pp. 131-151
-
-
Lu, S.1
Sun, Y.H.2
Chiang, V.L.3
-
22
-
-
57749199958
-
Differential expression of miRNAs in response to salt stress in maize roots
-
Ding D, Zhang L, Wang H, Liu Z, Zhang Z, et al. (2009) Differential expression of miRNAs in response to salt stress in maize roots. Ann Bot (Lond) 103: 29-38.
-
(2009)
Ann Bot (Lond)
, vol.103
, pp. 29-38
-
-
Ding, D.1
Zhang, L.2
Wang, H.3
Liu, Z.4
Zhang, Z.5
-
23
-
-
55049118172
-
Identification of cold-inducible microRNAs in plants by transcriptome analysis
-
Zhou X, Wang G, Sutoh K, Zhu JK, Zhang W (2008) Identification of cold-inducible microRNAs in plants by transcriptome analysis. Biochim Biophys Acta 1779: 780-788.
-
(2008)
Biochim Biophys Acta
, vol.1779
, pp. 780-788
-
-
Zhou, X.1
Wang, G.2
Sutoh, K.3
Zhu, J.K.4
Zhang, W.5
-
24
-
-
34047174556
-
The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA
-
Chuck G, Cigan AM, Saeteurn K, Hake S (2007) The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA. Nature Genetics 39: 544-549.
-
(2007)
Nature Genetics
, vol.39
, pp. 544-549
-
-
Chuck, G.1
Cigan, A.M.2
Saeteurn, K.3
Hake, S.4
-
25
-
-
21544469418
-
microRNA172 down-regulates glossy15 to promote vegetative phase change in maize
-
Lauter N, Kampani A, Carlson S, Goebel M, Moose SP (2005) microRNA172 down-regulates glossy15 to promote vegetative phase change in maize. Proc Natl Acad Sci U S A 102: 9412-9417.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 9412-9417
-
-
Lauter, N.1
Kampani, A.2
Carlson, S.3
Goebel, M.4
Moose, S.P.5
-
26
-
-
70450202132
-
The B73 maize genome: Complexity, diversity and dynamics
-
doi:1126/science.1178534
-
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, et al. (2009) The B73 maize genome: complexity, diversity and dynamics. Science 326: doi:1126/science.1178534.
-
(2009)
Science
, vol.326
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
-
27
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
Voinnet O (2009) Origin, biogenesis, and activity of plant microRNAs. Cell 136: 669-687.
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
29
-
-
58449137410
-
The Sorghum bicolor genome and the diversification of grasses
-
Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, et al. (2009) The Sorghum bicolor genome and the diversification of grasses. Nature 457: 551-556.
-
(2009)
Nature
, vol.457
, pp. 551-556
-
-
Paterson, A.H.1
Bowers, J.E.2
Bruggmann, R.3
Dubchak, I.4
Grimwood, J.5
-
30
-
-
42149157716
-
Identification of novel and candidate miRNAs in rice by high throughput sequencing
-
Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK (2008) Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol 8: 25.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 25
-
-
Sunkar, R.1
Zhou, X.2
Zheng, Y.3
Zhang, W.4
Zhu, J.K.5
-
31
-
-
42449150879
-
Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
-
Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, et al. (2008) Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs). Proc Natl Acad Sci U S A 105: 4951-4956.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 4951-4956
-
-
Lu, C.1
Jeong, D.H.2
Kulkarni, K.3
Pillay, M.4
Nobuta, K.5
-
32
-
-
32144438833
-
Identification of plant microRNA homologs
-
Dezulian T, Remmert M, Palatnik JF, Weigel D, Huson DH (2006) Identification of plant microRNA homologs. Bioinformatics 22: 359-360.
-
(2006)
Bioinformatics
, vol.22
, pp. 359-360
-
-
Dezulian, T.1
Remmert, M.2
Palatnik, J.F.3
Weigel, D.4
Huson, D.H.5
-
34
-
-
33745156778
-
Identification of 188 conserved maize microRNAs and their targets
-
Zhang BH, Pan XP, Anderson TA (2006) Identification of 188 conserved maize microRNAs and their targets. Febs Letters 580: 3753-3762.
-
(2006)
Febs Letters
, vol.580
, pp. 3753-3762
-
-
Zhang, B.H.1
Pan, X.P.2
Anderson, T.A.3
-
35
-
-
34548683235
-
Molecular evolution and selection of a gene encoding two tandem microRNAs in rice
-
Wang S, Zhu QH, Guo X, Gui Y, Bao J, et al. (2007) Molecular evolution and selection of a gene encoding two tandem microRNAs in rice. FEBS Lett 581: 4789-4793.
-
(2007)
FEBS Lett
, vol.581
, pp. 4789-4793
-
-
Wang, S.1
Zhu, Q.H.2
Guo, X.3
Gui, Y.4
Bao, J.5
-
36
-
-
34547668337
-
Common functions for diverse small RNAs of land plants
-
Axtell MJ, Snyder JA, Bartel DP (2007) Common functions for diverse small RNAs of land plants. Plant Cell 19: 1750-1769.
-
(2007)
Plant Cell
, vol.19
, pp. 1750-1769
-
-
Axtell, M.J.1
Snyder, J.A.2
Bartel, D.P.3
-
37
-
-
33645509923
-
Evolution of Arabidopsis microRNA families through duplication events
-
Maher C, Stein L, Ware D (2006) Evolution of Arabidopsis microRNA families through duplication events. Genome Res 16: 510-519.
-
(2006)
Genome Res
, vol.16
, pp. 510-519
-
-
Maher, C.1
Stein, L.2
Ware, D.3
-
38
-
-
27944509189
-
Molecular evolution of the rice miR395 gene family
-
Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, et al. (2005) Molecular evolution of the rice miR395 gene family. Cell Res 15: 631-638.
-
(2005)
Cell Res
, vol.15
, pp. 631-638
-
-
Guddeti, S.1
Zhang, D.C.2
Li, A.L.3
Leseberg, C.H.4
Kang, H.5
-
39
-
-
29144528351
-
Expression of Arabidopsis MIRNA genes
-
Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, et al. (2005) Expression of Arabidopsis MIRNA genes. Plant Physiol 138: 2145-2154.
-
(2005)
Plant Physiol
, vol.138
, pp. 2145-2154
-
-
Xie, Z.1
Allen, E.2
Fahlgren, N.3
Calamar, A.4
Givan, S.A.5
-
40
-
-
33745270651
-
Regulation of phosphate homeostasis by MicroRNA in Arabidopsis
-
Chiou TJ, Aung K, Lin SI, Wu CC, Chiang SF, et al. (2006) Regulation of phosphate homeostasis by MicroRNA in Arabidopsis. Plant Cell 18: 412-421 .
-
(2006)
Plant Cell
, vol.18
, pp. 412-421
-
-
Chiou, T.J.1
Aung, K.2
Lin, S.I.3
Wu, C.C.4
Chiang, S.F.5
-
41
-
-
56949106781
-
Insights into corn genes derived from large-scale cDNA sequencing
-
Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, et al. (2009) Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol Biol 69: 179-194.
-
(2009)
Plant Mol Biol
, vol.69
, pp. 179-194
-
-
Alexandrov, N.N.1
Brover, V.V.2
Freidin, S.3
Troukhan, M.E.4
Tatarinova, T.V.5
-
42
-
-
73649094751
-
-
Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, et al. (2009) Sequencing, Mapping, and Analysis of 27,455 Maize Full-Length cDNAs. PLoS Genet 5(11): e1000740. doi:10.1371/journal.pgen.1000740.
-
Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, et al. (2009) Sequencing, Mapping, and Analysis of 27,455 Maize Full-Length cDNAs. PLoS Genet 5(11): e1000740. doi:10.1371/journal.pgen.1000740.
-
-
-
-
43
-
-
32044434957
-
Features of Arabidopsis genes and genome discovered using full-length cDNAs
-
Alexandrov NN, Troukhan ME, Brover VV, Tatarinova T, Flavell RB, et al. (2006) Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol Biol 60: 69-85.
-
(2006)
Plant Mol Biol
, vol.60
, pp. 69-85
-
-
Alexandrov, N.N.1
Troukhan, M.E.2
Brover, V.V.3
Tatarinova, T.4
Flavell, R.B.5
-
44
-
-
63549090896
-
Highly diversified molecular evolution of downstream transcription start sites in rice and Arabidopsis
-
Tanaka T, Koyanagi KO, Itoh T (2009) Highly diversified molecular evolution of downstream transcription start sites in rice and Arabidopsis. Plant Physiol 149: 1316-1324.
-
(2009)
Plant Physiol
, vol.149
, pp. 1316-1324
-
-
Tanaka, T.1
Koyanagi, K.O.2
Itoh, T.3
-
45
-
-
33750953227
-
Whole-genome re-sequencing
-
Bentley DR (2006) Whole-genome re-sequencing. Curr Opin Genet Dev 16: 545-552.
-
(2006)
Curr Opin Genet Dev
, vol.16
, pp. 545-552
-
-
Bentley, D.R.1
-
46
-
-
33846116032
-
New developments in the InterPro database
-
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, et al. (2007) New developments in the InterPro database. Nucleic Acids Res 35: D224-228.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
-
47
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
-
48
-
-
24044440971
-
BiNGO: A Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
-
Maere S, Heymans K, Kuiper M (2005) BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics 21: 3448-3449.
-
(2005)
Bioinformatics
, vol.21
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
-
49
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13: 2498-2504.
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
-
50
-
-
63849131864
-
Evolution of MIR168 paralogs in Brassicaceae
-
Gazzani S, Li M, Maistri S, Scarponi E, Graziola M, et al. (2009) Evolution of MIR168 paralogs in Brassicaceae. BMC Evol Biol 9: 62.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 62
-
-
Gazzani, S.1
Li, M.2
Maistri, S.3
Scarponi, E.4
Graziola, M.5
-
51
-
-
33947309774
-
Evolution of plant microRNA gene families
-
Li A, Mao L (2007) Evolution of plant microRNA gene families. Cell Res 17: 212-218.
-
(2007)
Cell Res
, vol.17
, pp. 212-218
-
-
Li, A.1
Mao, L.2
-
52
-
-
5144234363
-
Close split of sorghum and maize genome progenitors
-
Swigonova Z, Lai J, Ma J, Ramakrishna W, Llaca V, et al. (2004) Close split of sorghum and maize genome progenitors. Genome Res 14: 1916-1923.
-
(2004)
Genome Res
, vol.14
, pp. 1916-1923
-
-
Swigonova, Z.1
Lai, J.2
Ma, J.3
Ramakrishna, W.4
Llaca, V.5
-
53
-
-
0346362490
-
Maize genome sequencing by methylation filtration
-
Palmer LE, Rabinowicz PD, O'Shaughnessy AL, Balija VS, Nascimento LU, et al. (2003) Maize genome sequencing by methylation filtration. Science 302: 2115-2117.
-
(2003)
Science
, vol.302
, pp. 2115-2117
-
-
Palmer, L.E.1
Rabinowicz, P.D.2
O'Shaughnessy, A.L.3
Balija, V.S.4
Nascimento, L.U.5
-
54
-
-
0345731466
-
Enrichment of gene-coding sequences in maize by genome filtration
-
Whitelaw CA, Barbazuk WB, Pertea G, Chan AP, Cheung F, et al. (2003) Enrichment of gene-coding sequences in maize by genome filtration. Science 302: 2118-2120.
-
(2003)
Science
, vol.302
, pp. 2118-2120
-
-
Whitelaw, C.A.1
Barbazuk, W.B.2
Pertea, G.3
Chan, A.P.4
Cheung, F.5
-
55
-
-
40849089396
-
Genetic design and statistical power of nested association mapping in maize
-
Yu J, Holland JB, McMullen MD, Buckler ES (2008) Genetic design and statistical power of nested association mapping in maize. Genetics 178: 539-551.
-
(2008)
Genetics
, vol.178
, pp. 539-551
-
-
Yu, J.1
Holland, J.B.2
McMullen, M.D.3
Buckler, E.S.4
-
56
-
-
19744371138
-
The effects of artificial selection on the maize genome
-
Wright SI, Bi IV, Schroeder SG, Yamasaki M, Doebley JF, et al. (2005) The effects of artificial selection on the maize genome. Science 308: 1310-1314.
-
(2005)
Science
, vol.308
, pp. 1310-1314
-
-
Wright, S.I.1
Bi, I.V.2
Schroeder, S.G.3
Yamasaki, M.4
Doebley, J.F.5
-
57
-
-
33344469072
-
A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement
-
Yamasaki M, Tenaillon MI, Bi IV, Schroeder SG, Sanchez-Villeda H, et al. (2005) A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement. Plant Cell 17: 2859-2872.
-
(2005)
Plant Cell
, vol.17
, pp. 2859-2872
-
-
Yamasaki, M.1
Tenaillon, M.I.2
Bi, I.V.3
Schroeder, S.G.4
Sanchez-Villeda, H.5
-
58
-
-
63349083143
-
Characterization and expression profiles of miRNAs in rice seeds
-
Xue LJ, Zhang JJ, Xue HW (2009) Characterization and expression profiles of miRNAs in rice seeds. Nucleic Acids Res 37: 916-930.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 916-930
-
-
Xue, L.J.1
Zhang, J.J.2
Xue, H.W.3
-
60
-
-
33845688601
-
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
-
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP (2006) A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev 20: 3407-3425.
-
(2006)
Genes Dev
, vol.20
, pp. 3407-3425
-
-
Rajagopalan, R.1
Vaucheret, H.2
Trejo, J.3
Bartel, D.P.4
-
61
-
-
23944456860
-
Time to grow up: The temporal role of smallRNAs in plants
-
Willmann MR, Poethig RS (2005) Time to grow up: the temporal role of smallRNAs in plants. Curr Opin Plant Biol 8: 548-552.
-
(2005)
Curr Opin Plant Biol
, vol.8
, pp. 548-552
-
-
Willmann, M.R.1
Poethig, R.S.2
-
62
-
-
58149279464
-
Big impacts by small RNAs in plant development
-
Chuck G, Candela H, Hake S (2009) Big impacts by small RNAs in plant development. Curr Opin Plant Biol 12: 81-86.
-
(2009)
Curr Opin Plant Biol
, vol.12
, pp. 81-86
-
-
Chuck, G.1
Candela, H.2
Hake, S.3
-
63
-
-
43149096961
-
In silico identification of conserved microRNAs in large number of diverse plant species
-
Sunkar R, Jagadeeswaran G (2008) In silico identification of conserved microRNAs in large number of diverse plant species. BMC Plant Biol 8: 37.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 37
-
-
Sunkar, R.1
Jagadeeswaran, G.2
-
64
-
-
0033768220
-
A novel gibberellin-induced gene from rice and its potential regulatory role in stem growth
-
van der Knaap E, Kim JH, Kende H (2000) A novel gibberellin-induced gene from rice and its potential regulatory role in stem growth. Plant Physiol 122: 695-704.
-
(2000)
Plant Physiol
, vol.122
, pp. 695-704
-
-
van der Knaap, E.1
Kim, J.H.2
Kende, H.3
-
65
-
-
0141872963
-
The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis
-
Kim JH, Choi D, Kende H (2003) The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis. Plant J 36: 94-104.
-
(2003)
Plant J
, vol.36
, pp. 94-104
-
-
Kim, J.H.1
Choi, D.2
Kende, H.3
-
66
-
-
23844550243
-
Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs
-
Baumberger N, Baulcombe DC (2005) Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs. Proc Natl Acad Sci U S A 102: 11928-11933.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 11928-11933
-
-
Baumberger, N.1
Baulcombe, D.C.2
-
67
-
-
23344447495
-
Identification and characterization of endogenous small interfering RNAs from rice
-
Sunkar R, Girke T, Zhu JK (2005) Identification and characterization of endogenous small interfering RNAs from rice. Nucleic Acids Res 33: 4443-4454.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 4443-4454
-
-
Sunkar, R.1
Girke, T.2
Zhu, J.K.3
-
68
-
-
2442650370
-
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development
-
Vaucheret H, Vazquez F, Crete P, Bartel DP (2004) The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev 18: 1187-1197.
-
(2004)
Genes Dev
, vol.18
, pp. 1187-1197
-
-
Vaucheret, H.1
Vazquez, F.2
Crete, P.3
Bartel, D.P.4
-
69
-
-
39549115890
-
Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
-
Yao Y, Guo G, Ni Z, Sunkar R, Du J, et al. (2007) Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). Genome Biol 8: R96.
-
(2007)
Genome Biol
, vol.8
-
-
Yao, Y.1
Guo, G.2
Ni, Z.3
Sunkar, R.4
Du, J.5
-
70
-
-
26944493068
-
Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation
-
Pina C, Pinto F, Feijo JA, Becker JD (2005) Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation. Plant Physiol 138: 744-756.
-
(2005)
Plant Physiol
, vol.138
, pp. 744-756
-
-
Pina, C.1
Pinto, F.2
Feijo, J.A.3
Becker, J.D.4
-
71
-
-
67651156037
-
Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana
-
Alves-Junior L, Niemeier S, Hauenschild A, Rehmsmeier M, Merkle T (2009) Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana. Nucleic Acids Res 37: 4010-4021.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 4010-4021
-
-
Alves-Junior, L.1
Niemeier, S.2
Hauenschild, A.3
Rehmsmeier, M.4
Merkle, T.5
-
72
-
-
3843089328
-
Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes
-
Bonnet E, Wuyts J, Rouze P, Van de Peer Y (2004) Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes. Proc Natl Acad Sci U S A 101: 11511-11516.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 11511-11516
-
-
Bonnet, E.1
Wuyts, J.2
Rouze, P.3
Van de Peer, Y.4
-
73
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
-
Jones-Rhoades MW, Bartel DP (2004) Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 14: 787-799.
-
(2004)
Mol Cell
, vol.14
, pp. 787-799
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
-
74
-
-
33748288105
-
Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
-
Luo YC, Zhou H, Li Y, Chen JY, Yang JH, et al. (2006) Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development. FEBS Lett 580: 5111-5116.
-
(2006)
FEBS Lett
, vol.580
, pp. 5111-5116
-
-
Luo, Y.C.1
Zhou, H.2
Li, Y.3
Chen, J.Y.4
Yang, J.H.5
-
75
-
-
3042626641
-
Identification of 20 microRNAs from Oryza sativa
-
Wang JF, Zhou H, Chen YQ, Luo QJ, Qu LH (2004) Identification of 20 microRNAs from Oryza sativa. Nucleic Acids Res 32: 1688-1695.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1688-1695
-
-
Wang, J.F.1
Zhou, H.2
Chen, Y.Q.3
Luo, Q.J.4
Qu, L.H.5
-
76
-
-
43449107651
-
Identification and verification of microRNA in wheat (Triticum aestivum)
-
Jin W, Li N, Zhang B, Wu F, Li W, et al. (2008) Identification and verification of microRNA in wheat (Triticum aestivum). J Plant Res 121: 351-355.
-
(2008)
J Plant Res
, vol.121
, pp. 351-355
-
-
Jin, W.1
Li, N.2
Zhang, B.3
Wu, F.4
Li, W.5
-
77
-
-
42549136362
-
Novel and nodulation-regulated microRNAs in soybean roots
-
Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, et al. (2008) Novel and nodulation-regulated microRNAs in soybean roots. BMC Genomics 9: 160.
-
(2008)
BMC Genomics
, vol.9
, pp. 160
-
-
Subramanian, S.1
Fu, Y.2
Sunkar, R.3
Barbazuk, W.B.4
Zhu, J.K.5
-
78
-
-
33947411951
-
Computational identification of novel microRNAs and targets in Brassica napus
-
Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, et al. (2007) Computational identification of novel microRNAs and targets in Brassica napus. FEBS Lett 581: 1464-1474.
-
(2007)
FEBS Lett
, vol.581
, pp. 1464-1474
-
-
Xie, F.L.1
Huang, S.Q.2
Guo, K.3
Xiang, A.L.4
Zhu, Y.Y.5
-
79
-
-
69249101248
-
-
Plant J
-
Carra A, Mica E, Gambino G, Pindo M, Moser C, et al. (2009) Cloning and characterization of small non-coding RNAs from grape. Plant J.
-
(2009)
Cloning and characterization of small non-coding RNAs from grape
-
-
Carra, A.1
Mica, E.2
Gambino, G.3
Pindo, M.4
Moser, C.5
-
80
-
-
42149177744
-
The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis
-
Schwarz S, Grande AV, Bujdoso N, Saedler H, Huijser P (2008) The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis. Plant Mol Biol 67: 183-195.
-
(2008)
Plant Mol Biol
, vol.67
, pp. 183-195
-
-
Schwarz, S.1
Grande, A.V.2
Bujdoso, N.3
Saedler, H.4
Huijser, P.5
-
81
-
-
54949093292
-
Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana
-
Wang JW, Schwab R, Czech B, Mica E, Weigel D (2008) Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana. Plant Cell 20: 1231-1243.
-
(2008)
Plant Cell
, vol.20
, pp. 1231-1243
-
-
Wang, J.W.1
Schwab, R.2
Czech, B.3
Mica, E.4
Weigel, D.5
-
82
-
-
20444485252
-
The Arabidopsis GAMYB-like genes, MYB33 and MYB65, are MicroRNA-regulated genes that redundantly facilitate anther development
-
Millar AA, Gubler F (2005) The Arabidopsis GAMYB-like genes, MYB33 and MYB65, are MicroRNA-regulated genes that redundantly facilitate anther development. Plant Cell 17: 705-721.
-
(2005)
Plant Cell
, vol.17
, pp. 705-721
-
-
Millar, A.A.1
Gubler, F.2
-
83
-
-
33747878547
-
Characterization of five microRNA families in maize
-
Mica E, Gianfranceschi L, Pe ME (2006) Characterization of five microRNA families in maize. J Exp Bot 57: 2601-2612.
-
(2006)
J Exp Bot
, vol.57
, pp. 2601-2612
-
-
Mica, E.1
Gianfranceschi, L.2
Pe, M.E.3
-
84
-
-
33751516753
-
Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction
-
Wu MF, Tian Q, Reed JW (2006) Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction. Development 133: 4211-4218.
-
(2006)
Development
, vol.133
, pp. 4211-4218
-
-
Wu, M.F.1
Tian, Q.2
Reed, J.W.3
-
85
-
-
0242361521
-
Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes
-
Aukerman MJ, Sakai H (2003) Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes. Plant Cell 15: 2730-2741.
-
(2003)
Plant Cell
, vol.15
, pp. 2730-2741
-
-
Aukerman, M.J.1
Sakai, H.2
-
86
-
-
6944228992
-
Specification of adaxial cell fate during maize leaf development
-
Juarez MT, Twigg RW, Timmermans MC (2004) Specification of adaxial cell fate during maize leaf development. Development 131: 4533-4544.
-
(2004)
Development
, vol.131
, pp. 4533-4544
-
-
Juarez, M.T.1
Twigg, R.W.2
Timmermans, M.C.3
-
87
-
-
33751250183
-
Computational identification of microRNAs and their targets
-
Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA (2006) Computational identification of microRNAs and their targets. Computational Biology and Chemistry 30: 395-407.
-
(2006)
Computational Biology and Chemistry
, vol.30
, pp. 395-407
-
-
Zhang, B.H.1
Pan, X.P.2
Wang, Q.L.3
Cobb, G.P.4
Anderson, T.A.5
-
88
-
-
34347263491
-
Small RNAs as big players in plant abiotic stress responses and nutrient deprivation
-
Sunkar R, Chinnusamy V, Zhu J, Zhu JK (2007) Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends Plant Sci 12: 301-309.
-
(2007)
Trends Plant Sci
, vol.12
, pp. 301-309
-
-
Sunkar, R.1
Chinnusamy, V.2
Zhu, J.3
Zhu, J.K.4
-
89
-
-
18844424626
-
The role of ARGONAUTE1 (AGO1) in meristem formation and identity
-
Kidner CA, Martienssen RA (2005) The role of ARGONAUTE1 (AGO1) in meristem formation and identity. Dev Biol 280: 504-517.
-
(2005)
Dev Biol
, vol.280
, pp. 504-517
-
-
Kidner, C.A.1
Martienssen, R.A.2
-
90
-
-
0038076109
-
Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation
-
Xie Z, Kasschau KD, Carrington JC (2003) Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation. Curr Biol 13: 784-789.
-
(2003)
Curr Biol
, vol.13
, pp. 784-789
-
-
Xie, Z.1
Kasschau, K.D.2
Carrington, J.C.3
-
91
-
-
3142700743
-
Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
-
Blanc G, Wolfe KH (2004) Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell 16: 1667-1678.
-
(2004)
Plant Cell
, vol.16
, pp. 1667-1678
-
-
Blanc, G.1
Wolfe, K.H.2
-
92
-
-
0037468758
-
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
-
Bowers JE, Chapman BA, Rong J, Paterson AH (2003) Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422: 433-438.
-
(2003)
Nature
, vol.422
, pp. 433-438
-
-
Bowers, J.E.1
Chapman, B.A.2
Rong, J.3
Paterson, A.H.4
-
93
-
-
0030959648
-
DNA sequence evidence for the segmental allotetraploid origin of maize
-
Gaut BS, Doebley JF (1997) DNA sequence evidence for the segmental allotetraploid origin of maize. Proc Natl Acad Sci U S A 94: 6809-6814.
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 6809-6814
-
-
Gaut, B.S.1
Doebley, J.F.2
-
94
-
-
5144230950
-
Gene loss and movement in the maize genome
-
Lai J, Ma J, Swigonova Z, Ramakrishna W, Linton E, et al. (2004) Gene loss and movement in the maize genome. Genome Res 14: 1924-1931.
-
(2004)
Genome Res
, vol.14
, pp. 1924-1931
-
-
Lai, J.1
Ma, J.2
Swigonova, Z.3
Ramakrishna, W.4
Linton, E.5
-
95
-
-
33749387064
-
Uneven chromosome contraction and expansion in the maize genome
-
Bruggmann R, Bharti AK, Gundlach H, Lai J, Young S, et al. (2006) Uneven chromosome contraction and expansion in the maize genome. Genome Res 16: 1241-1251.
-
(2006)
Genome Res
, vol.16
, pp. 1241-1251
-
-
Bruggmann, R.1
Bharti, A.K.2
Gundlach, H.3
Lai, J.4
Young, S.5
-
96
-
-
1542338594
-
Genomic duplication, fractionation and the origin of regulatory novelty
-
Langham RJ, Walsh J, Dunn M, Ko C, Goff SA, et al. (2004) Genomic duplication, fractionation and the origin of regulatory novelty. Genetics 166: 935-945.
-
(2004)
Genetics
, vol.166
, pp. 935-945
-
-
Langham, R.J.1
Walsh, J.2
Dunn, M.3
Ko, C.4
Goff, S.A.5
-
97
-
-
14744275063
-
Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum
-
Swigonova Z, Bennetzen JL, Messing J (2005) Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum. Genetics 169: 891-906.
-
(2005)
Genetics
, vol.169
, pp. 891-906
-
-
Swigonova, Z.1
Bennetzen, J.L.2
Messing, J.3
-
99
-
-
57749100022
-
Evolutionary genetics of genome merger and doubling in plants
-
Doyle JJ, Flagel LE, Paterson AH, Rapp RA, Soltis DE, et al. (2008) Evolutionary genetics of genome merger and doubling in plants. Annu Rev Genet 42: 443-461.
-
(2008)
Annu Rev Genet
, vol.42
, pp. 443-461
-
-
Doyle, J.J.1
Flagel, L.E.2
Paterson, A.H.3
Rapp, R.A.4
Soltis, D.E.5
-
100
-
-
0345306751
-
The origins of genome complexity
-
Lynch M, Conery JS (2003) The origins of genome complexity. Science 302: 1401-1404.
-
(2003)
Science
, vol.302
, pp. 1401-1404
-
-
Lynch, M.1
Conery, J.S.2
-
101
-
-
36549038087
-
Consequences of genome duplication
-
Semon M, Wolfe KH (2007) Consequences of genome duplication. Curr Opin Genet Dev 17: 505-512.
-
(2007)
Curr Opin Genet Dev
, vol.17
, pp. 505-512
-
-
Semon, M.1
Wolfe, K.H.2
-
102
-
-
4444363053
-
Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome
-
Seoighe C, Gehring C (2004) Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome. Trends Genet 20: 461-464.
-
(2004)
Trends Genet
, vol.20
, pp. 461-464
-
-
Seoighe, C.1
Gehring, C.2
-
103
-
-
18844408081
-
Evidence for an ancient whole-genome duplication event in rice and other cereals
-
Tian CG, Xiong YQ, Liu TY, Sun SH, Chen LB, et al. (2005) Evidence for an ancient whole-genome duplication event in rice and other cereals. Yi Chuan Xue Bao 32: 519-527.
-
(2005)
Yi Chuan Xue Bao
, vol.32
, pp. 519-527
-
-
Tian, C.G.1
Xiong, Y.Q.2
Liu, T.Y.3
Sun, S.H.4
Chen, L.B.5
-
104
-
-
33644499450
-
Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication
-
Chapman BA, Bowers JE, Feltus FA, Paterson AH (2006) Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication. Proc Natl Acad Sci U S A 103: 2730-2735.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 2730-2735
-
-
Chapman, B.A.1
Bowers, J.E.2
Feltus, F.A.3
Paterson, A.H.4
-
105
-
-
33644652494
-
Human and orthologous gene nomenclature
-
Wright MW, Bruford EA (2006) Human and orthologous gene nomenclature. Gene 369: 1-6.
-
(2006)
Gene
, vol.369
, pp. 1-6
-
-
Wright, M.W.1
Bruford, E.A.2
-
106
-
-
0033799583
-
The syntenic relationship of the zebrafish and human genomes
-
Barbazuk WB, Korf I, Kadavi C, Heyen J, Tate S, et al. (2000) The syntenic relationship of the zebrafish and human genomes. Genome Res 10: 1351-1358.
-
(2000)
Genome Res
, vol.10
, pp. 1351-1358
-
-
Barbazuk, W.B.1
Korf, I.2
Kadavi, C.3
Heyen, J.4
Tate, S.5
-
107
-
-
48249109932
-
Structurally different alleles of the ath-MIR824 microRNA precursor are maintained at high frequency in Arabidopsis thaliana
-
de Meaux J, Hu JY, Tartler U, Goebel U (2008) Structurally different alleles of the ath-MIR824 microRNA precursor are maintained at high frequency in Arabidopsis thaliana. Proc Natl Acad Sci U S A 105: 8994-8999.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 8994-8999
-
-
de Meaux, J.1
Hu, J.Y.2
Tartler, U.3
Goebel, U.4
-
108
-
-
48249142558
-
Sequence variation of MicroRNAs and their binding sites in Arabidopsis
-
Ehrenreich IM, Purugganan MD (2008) Sequence variation of MicroRNAs and their binding sites in Arabidopsis. Plant Physiol 146: 1974-1982.
-
(2008)
Plant Physiol
, vol.146
, pp. 1974-1982
-
-
Ehrenreich, I.M.1
Purugganan, M.D.2
-
109
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
110
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132: 365-386.
-
(2000)
Methods Mol Biol
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
111
-
-
16244398080
-
Specific effects of microRNAs on the plant transcriptome
-
Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, et al. (2005) Specific effects of microRNAs on the plant transcriptome. Dev Cell 8: 517-527.
-
(2005)
Dev Cell
, vol.8
, pp. 517-527
-
-
Schwab, R.1
Palatnik, J.F.2
Riester, M.3
Schommer, C.4
Schmid, M.5
-
112
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: A practical and powerful approach to multiple testing. J Roy Statist Soc Ser. pp 289-300.
-
(1995)
J Roy Statist Soc Ser
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
113
-
-
59949096873
-
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
-
Vilella AJ, Severin J, Ureta-Vidal A, Heng L, Durbin R, et al. (2009) EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates. Genome Res 19: 327-335.
-
(2009)
Genome Res
, vol.19
, pp. 327-335
-
-
Vilella, A.J.1
Severin, J.2
Ureta-Vidal, A.3
Heng, L.4
Durbin, R.5
-
114
-
-
38549144806
-
The Arabidopsis Information Resource (TAIR): Gene structure and function annotation
-
Swarbreck D, Wilks C, Lamesch P, Berardini TZ, Garcia-Hernandez M, et al. (2008) The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Res 36: D1009-1014.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Swarbreck, D.1
Wilks, C.2
Lamesch, P.3
Berardini, T.Z.4
Garcia-Hernandez, M.5
-
115
-
-
33846101405
-
The TIGR Rice Genome Annotation Resource: Improvements and new features
-
Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, et al. (2007) The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Res 35: D883-887.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Ouyang, S.1
Zhu, W.2
Hamilton, J.3
Lin, H.4
Campbell, M.5
-
116
-
-
58149185123
-
-
Hubbard TJ, Aken BL, Ayling S, Ballester B, Beal K, et al. (2009) Ensembl 2009. Nucleic Acids Res 37: D690-697.
-
(2009)
Ensembl 2009. Nucleic Acids Res
, vol.37
-
-
Hubbard, T.J.1
Aken, B.L.2
Ayling, S.3
Ballester, B.4
Beal, K.5
-
117
-
-
12344335569
-
DAGchainer: A tool for mining segmental genome duplications and synteny
-
Haas BJ, Delcher AL, Wortman JR, Salzberg SL (2004) DAGchainer: a tool for mining segmental genome duplications and synteny. Bioinformatics 20: 3643-3646.
-
(2004)
Bioinformatics
, vol.20
, pp. 3643-3646
-
-
Haas, B.J.1
Delcher, A.L.2
Wortman, J.R.3
Salzberg, S.L.4
-
118
-
-
42249107508
-
-
Sanchez-Villeda H, Schroeder S, Flint-Garcia S, Guill KE, Yamasaki M, et al. (2008) DNAAlignEditor: DNA alignment editor tool. BMC Bioinformatics 9: 154.
-
Sanchez-Villeda H, Schroeder S, Flint-Garcia S, Guill KE, Yamasaki M, et al. (2008) DNAAlignEditor: DNA alignment editor tool. BMC Bioinformatics 9: 154.
-
-
-
-
119
-
-
33644874404
-
Gramene: A bird's eye view of cereal genomes
-
Jaiswal P, Ni J, Yap I, Ware D, Spooner W, et al. (2006) Gramene: a bird's eye view of cereal genomes. Nucleic Acids Res 34: D717-723.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Jaiswal, P.1
Ni, J.2
Yap, I.3
Ware, D.4
Spooner, W.5
-
120
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
122
-
-
0025008168
-
Sequence logos: A new way to display consensus sequences
-
Schneider TD, Stephens RM (1990) Sequence logos: a new way to display consensus sequences. Nucleic Acids Res 18: 6097-6100.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
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