메뉴 건너뛰기




Volumn 6, Issue , 2015, Pages

MiRNA-target chimeras reveal miRNA 3′-end pairing as a major determinant of Argonaute target specificity

Author keywords

[No Author keywords available]

Indexed keywords

ARGONAUTE PROTEIN; MICRORNA; RIBONUCLEASE; RNA LIGASE; MESSENGER RNA;

EID: 84948672434     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms9864     Document Type: Article
Times cited : (234)

References (68)
  • 1
    • 77953629046 scopus 로고    scopus 로고
    • Regulation of mRNA translation and stability by microRNAs
    • Fabian, M. R., Sonenberg, N. & Filipowicz, W. Regulation of mRNA translation and stability by microRNAs. Annu. Rev. Biochem. 79, 351-379 (2010).
    • (2010) Annu. Rev. Biochem. , vol.79 , pp. 351-379
    • Fabian, M.R.1    Sonenberg, N.2    Filipowicz, W.3
  • 2
    • 84889243683 scopus 로고    scopus 로고
    • MicroRNA-128 governs neuronal excitability and motor behavior in mice
    • Tan, C. L. et al. MicroRNA-128 governs neuronal excitability and motor behavior in mice. Science 342, 1254-1258 (2013).
    • (2013) Science , vol.342 , pp. 1254-1258
    • Tan, C.L.1
  • 3
    • 84860388339 scopus 로고    scopus 로고
    • MicroRNAs in neuronal function and dysfunction
    • Im, H. I. & Kenny, P. J. MicroRNAs in neuronal function and dysfunction. Trends Neurosci. 35, 325-334 (2012).
    • (2012) Trends Neurosci. , vol.35 , pp. 325-334
    • Im, H.I.1    Kenny, P.J.2
  • 4
    • 84864936363 scopus 로고    scopus 로고
    • MicroRNAs in human malignant gliomas
    • Mizoguchi, M. et al. MicroRNAs in human malignant gliomas. J. Oncol. 2012, 732874 (2012).
    • (2012) J. Oncol. , vol.2012 , pp. 732874
    • Mizoguchi, M.1
  • 5
    • 84866104494 scopus 로고    scopus 로고
    • Inferring transcriptional and microRNA-mediated regulatory programs in glioblastoma
    • Setty, M. et al. Inferring transcriptional and microRNA-mediated regulatory programs in glioblastoma. Mol. Syst. Biol. 8, 605 (2012).
    • (2012) Mol. Syst. Biol. , vol.8 , pp. 605
    • Setty, M.1
  • 6
    • 84906313950 scopus 로고    scopus 로고
    • Identification and consequences of miRNA-target interactions-beyond repression of gene expression
    • Hausser, J. & Zavolan, M. Identification and consequences of miRNA-target interactions-beyond repression of gene expression. Nat. Rev. Genet. 15, 599-612 (2014).
    • (2014) Nat. Rev. Genet. , vol.15 , pp. 599-612
    • Hausser, J.1    Zavolan, M.2
  • 7
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • Friedman, R. C., Farh, K. K., Burge, C. B. & Bartel, D. P. Most mammalian mRNAs are conserved targets of microRNAs. Genome Res. 19, 92-105 (2009).
    • (2009) Genome Res. , vol.19 , pp. 92-105
    • Friedman, R.C.1    Farh, K.K.2    Burge, C.B.3    Bartel, D.P.4
  • 8
    • 35548996307 scopus 로고    scopus 로고
    • Determinants of targeting by endogenous and exogenous microRNAs and siRNAs
    • Nielsen, C. B. et al. Determinants of targeting by endogenous and exogenous microRNAs and siRNAs. RNA 13, 1894-1910 (2007).
    • (2007) RNA , vol.13 , pp. 1894-1910
    • Nielsen, C.B.1
  • 9
    • 70450172473 scopus 로고    scopus 로고
    • Survey of computational algorithms for microRNA target prediction
    • Yue, D., Liu, H. & Huang, Y. Survey of computational algorithms for microRNA target prediction. Curr. Genomics 10, 478-492 (2009).
    • (2009) Curr. Genomics , vol.10 , pp. 478-492
    • Yue, D.1    Liu, H.2    Huang, Y.3
  • 10
    • 80455154984 scopus 로고    scopus 로고
    • Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs
    • Garcia, D. M. et al. Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs. Nat. Struct. Mol. Biol. 18, 1139-1146 (2011).
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 1139-1146
    • Garcia, D.M.1
  • 11
    • 84904045942 scopus 로고    scopus 로고
    • MiR-1202 is a primate-specific and brain-enriched microRNA involved in major depression and antidepressant treatment
    • Lopez, J. P. et al. miR-1202 is a primate-specific and brain-enriched microRNA involved in major depression and antidepressant treatment. Nat. Med. 20, 764-768 (2014).
    • (2014) Nat. Med. , vol.20 , pp. 764-768
    • Lopez, J.P.1
  • 12
    • 85027931294 scopus 로고    scopus 로고
    • MicroRNA target site identification by integrating sequence and binding information
    • Majoros, W. H. et al. MicroRNA target site identification by integrating sequence and binding information. Nat. Methods 10, 630-633 (2013).
    • (2013) Nat. Methods , vol.10 , pp. 630-633
    • Majoros, W.H.1
  • 13
    • 84857955708 scopus 로고    scopus 로고
    • An alternative mode of microRNA target recognition
    • Chi, S. W., Hannon, G. J. & Darnell, R. B. An alternative mode of microRNA target recognition. Nat. Struct. Mol. Biol. 19, 321-327 (2012).
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 321-327
    • Chi, S.W.1    Hannon, G.J.2    Darnell, R.B.3
  • 14
    • 84870951115 scopus 로고    scopus 로고
    • Transcriptome-wide miR-155 binding map reveals widespread noncanonical microRNA targeting
    • Loeb, G. B. et al. Transcriptome-wide miR-155 binding map reveals widespread noncanonical microRNA targeting. Mol. Cell 48, 760-770 (2012).
    • (2012) Mol. Cell , vol.48 , pp. 760-770
    • Loeb, G.B.1
  • 15
    • 77955963884 scopus 로고    scopus 로고
    • Comprehensive modeling of microRNA targets predicts functional non-conserved and noncanonical sites
    • Betel, D., Koppal, A., Agius, P., Sander, C. & Leslie, C. Comprehensive modeling of microRNA targets predicts functional non-conserved and noncanonical sites. Genome Biol. 11, R90 (2010).
    • (2010) Genome Biol. , vol.11 , pp. R90
    • Betel, D.1    Koppal, A.2    Agius, P.3    Sander, C.4    Leslie, C.5
  • 16
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: Target recognition and regulatory functions
    • Bartel, D. P. MicroRNAs: target recognition and regulatory functions. Cell 136, 215-233 (2009).
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 17
    • 34250805982 scopus 로고    scopus 로고
    • MicroRNA targeting specificity in mammals: Determinants beyond seed pairing
    • Grimson, A. et al. MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol. Cell 27, 91-105 (2007).
    • (2007) Mol. Cell , vol.27 , pp. 91-105
    • Grimson, A.1
  • 19
    • 84876935138 scopus 로고    scopus 로고
    • Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding
    • Helwak, A., Kudla, G., Dudnakova, T. & Tollervey, D. Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding. Cell 153, 654-665 (2013).
    • (2013) Cell , vol.153 , pp. 654-665
    • Helwak, A.1    Kudla, G.2    Dudnakova, T.3    Tollervey, D.4
  • 20
    • 69949098536 scopus 로고    scopus 로고
    • MiR-24 Inhibits cell proliferation by targeting E2F2, MYC, and other cell-cycle genes via binding to 'seedless' 30UTR microRNA recognition elements
    • Lal, A. et al. miR-24 Inhibits cell proliferation by targeting E2F2, MYC, and other cell-cycle genes via binding to 'seedless' 30UTR microRNA recognition elements. Mol. Cell 35, 610-625 (2009).
    • (2009) Mol. Cell , vol.35 , pp. 610-625
    • Lal, A.1
  • 21
    • 77955475953 scopus 로고    scopus 로고
    • Expanding the microRNA targeting code: Functional sites with centered pairing
    • Shin, C. et al. Expanding the microRNA targeting code: functional sites with centered pairing. Mol. Cell 38, 789-802 (2010).
    • (2010) Mol. Cell , vol.38 , pp. 789-802
    • Shin, C.1
  • 22
    • 67749132423 scopus 로고    scopus 로고
    • Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
    • Chi, S. W., Zang, J. B., Mele, A. & Darnell, R. B. Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature 460, 479-486 (2009).
    • (2009) Nature , vol.460 , pp. 479-486
    • Chi, S.W.1    Zang, J.B.2    Mele, A.3    Darnell, R.B.4
  • 23
    • 56549105330 scopus 로고    scopus 로고
    • HITS-CLIP yields genome-wide insights into brain alternative RNA processing
    • Licatalosi, D. D. et al. HITS-CLIP yields genome-wide insights into brain alternative RNA processing. Nature 456, 464-469 (2008).
    • (2008) Nature , vol.456 , pp. 464-469
    • Licatalosi, D.D.1
  • 24
    • 77950920903 scopus 로고    scopus 로고
    • Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
    • Hafner, M. et al. Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141, 129-141 (2010).
    • (2010) Cell , vol.141 , pp. 129-141
    • Hafner, M.1
  • 25
    • 79959946169 scopus 로고    scopus 로고
    • Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast
    • Kudla, G., Granneman, S., Hahn, D., Beggs, J. D. & Tollervey, D. Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast. Proc. Natl Acad. Sci. USA 108, 10010-10015 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 10010-10015
    • Kudla, G.1    Granneman, S.2    Hahn, D.3    Beggs, J.D.4    Tollervey, D.5
  • 26
    • 84903616729 scopus 로고    scopus 로고
    • Unambiguous identification of miRNA:target site interactions by different types of ligation reactions
    • Grosswendt, S. et al. Unambiguous identification of miRNA:target site interactions by different types of ligation reactions. Mol. Cell 54, 1042-1054 (2014).
    • (2014) Mol. Cell , vol.54 , pp. 1042-1054
    • Grosswendt, S.1
  • 27
    • 84893256374 scopus 로고    scopus 로고
    • Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis
    • Moore, M. J. et al. Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis. Nat. Protoc. 9, 263-293 (2014).
    • (2014) Nat. Protoc. , vol.9 , pp. 263-293
    • Moore, M.J.1
  • 28
    • 79959757662 scopus 로고    scopus 로고
    • T4 RNA ligase 2 truncated active site mutants: Improved tools for RNA analysis
    • Viollet, S., Fuchs, R. T., Munafo, D. B., Zhuang, F. & Robb, G. B. T4 RNA ligase 2 truncated active site mutants: improved tools for RNA analysis. BMC Biotechnol. 11, 72 (2011).
    • (2011) BMC Biotechnol , vol.11 , pp. 72
    • Viollet, S.1    Fuchs, R.T.2    Munafo, D.B.3    Zhuang, F.4    Robb, G.B.5
  • 29
    • 27944508215 scopus 로고    scopus 로고
    • CLIP: A method for identifying protein-RNA interaction sites in living cells
    • Ule, J., Jensen, K., Mele, A. & Darnell, R. B. CLIP: a method for identifying protein-RNA interaction sites in living cells. Methods 37, 376-386 (2005).
    • (2005) Methods , vol.37 , pp. 376-386
    • Ule, J.1    Jensen, K.2    Mele, A.3    Darnell, R.B.4
  • 30
    • 84892544892 scopus 로고    scopus 로고
    • RNAi factors are present and active in human cell nuclei
    • Gagnon, K. T., Li, L., Chu, Y., Janowski, B. A. & Corey, D. R. RNAi factors are present and active in human cell nuclei. Cell Rep. 6, 211-221 (2014).
    • (2014) Cell Rep. , vol.6 , pp. 211-221
    • Gagnon, K.T.1    Li, L.2    Chu, Y.3    Janowski, B.A.4    Corey, D.R.5
  • 31
    • 84874279332 scopus 로고    scopus 로고
    • Two new and distinct roles for Drosophila Argonaute-2 in the nucleus: Alternative pre-mRNA splicing and transcriptional repression
    • Taliaferro, J. M. et al. Two new and distinct roles for Drosophila Argonaute-2 in the nucleus: alternative pre-mRNA splicing and transcriptional repression. Genes Dev. 27, 378-389 (2013).
    • (2013) Genes Dev. , vol.27 , pp. 378-389
    • Taliaferro, J.M.1
  • 32
    • 75649133887 scopus 로고    scopus 로고
    • Expanded RNA-binding activities of mammalian Argonaute 2
    • Tan, G. S. et al. Expanded RNA-binding activities of mammalian Argonaute 2. Nucleic Acids Res. 37, 7533-7545 (2009).
    • (2009) Nucleic Acids Res. , vol.37 , pp. 7533-7545
    • Tan, G.S.1
  • 33
    • 84925321723 scopus 로고    scopus 로고
    • Systematic discovery of regulated and conserved alternative exons in the mammalian brain reveals NMD modulating chromatin regulators
    • Yan, Q. et al. Systematic discovery of regulated and conserved alternative exons in the mammalian brain reveals NMD modulating chromatin regulators. Proc. Natl Acad. Sci. USA 112, 3445-3450 (2015).
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. 3445-3450
    • Yan, Q.1
  • 34
    • 84897051164 scopus 로고    scopus 로고
    • HITS-CLIP and integrative modeling define the Rbfox splicing-regulatory network linked to brain development and autism
    • Weyn-Vanhentenryck, S. M. et al. HITS-CLIP and integrative modeling define the Rbfox splicing-regulatory network linked to brain development and autism. Cell Rep. 6, 1139-1152 (2014).
    • (2014) Cell Rep. , vol.6 , pp. 1139-1152
    • Weyn-Vanhentenryck, S.M.1
  • 35
    • 77954838957 scopus 로고    scopus 로고
    • Integrative modeling defines the nova splicing-regulatory network and its combinatorial controls
    • Zhang, C. et al. Integrative modeling defines the nova splicing-regulatory network and its combinatorial controls. Science 329, 439-443 (2010).
    • (2010) Science , vol.329 , pp. 439-443
    • Zhang, C.1
  • 36
    • 63649138643 scopus 로고    scopus 로고
    • MiR-124 regulates adult neurogenesis in the subventricular zone stem cell niche
    • Cheng, L. C., Pastrana, E., Tavazoie, M. & Doetsch, F. miR-124 regulates adult neurogenesis in the subventricular zone stem cell niche. Nat. Neurosci. 12, 399-408 (2009).
    • (2009) Nat. Neurosci. , vol.12 , pp. 399-408
    • Cheng, L.C.1    Pastrana, E.2    Tavazoie, M.3    Doetsch, F.4
  • 37
    • 77957194193 scopus 로고    scopus 로고
    • Context-dependent functions of specific microRNAs in neuronal development
    • Gao, F. B. Context-dependent functions of specific microRNAs in neuronal development. Neural. Dev. 5, 25 (2010).
    • (2010) Neural. Dev. , vol.5 , pp. 25
    • Gao, F.B.1
  • 38
    • 34547212309 scopus 로고    scopus 로고
    • The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing
    • Makeyev, E. V., Zhang, J., Carrasco, M. A. & Maniatis, T. The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing. Mol. Cell 27, 435-448 (2007).
    • (2007) Mol. Cell , vol.27 , pp. 435-448
    • Makeyev, E.V.1    Zhang, J.2    Carrasco, M.A.3    Maniatis, T.4
  • 39
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz, S. et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576-589 (2010).
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1
  • 40
    • 33747849920 scopus 로고    scopus 로고
    • RNAhybrid: MicroRNA target prediction easy, fast and flexible
    • Kruger, J. & Rehmsmeier, M. RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Res. 34, W451-W454 (2006).
    • (2006) Nucleic Acids Res. , vol.34 , pp. W451-W454
    • Kruger, J.1    Rehmsmeier, M.2
  • 41
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis, B. P., Burge, C. B. & Bartel, D. P. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120, 15-20 (2005).
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 42
    • 34347398567 scopus 로고    scopus 로고
    • Inference of miRNA targets using evolutionary conservation and pathway analysis
    • Gaidatzis, D., van Nimwegen, E., Hausser, J. & Zavolan, M. Inference of miRNA targets using evolutionary conservation and pathway analysis. BMC Bioinformatics 8, 69 (2007).
    • (2007) BMC Bioinformatics , vol.8 , pp. 69
    • Gaidatzis, D.1    Van Nimwegen, E.2    Hausser, J.3    Zavolan, M.4
  • 43
    • 84891796290 scopus 로고    scopus 로고
    • MiRTarBase update 2014: An information resource for experimentally validated miRNA-target interactions
    • Hsu, S. D. et al. miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions. Nucleic Acids Res. 42, D78-D85 (2014).
    • (2014) Nucleic Acids Res. , vol.42 , pp. D78-D85
    • Hsu, S.D.1
  • 44
    • 84877258007 scopus 로고    scopus 로고
    • Treatment of HCV infection by targeting microRNA
    • Janssen, H. L. et al. Treatment of HCV infection by targeting microRNA. N. Engl. J. Med. 368, 1685-1694 (2013).
    • (2013) N. Engl. J. Med. , vol.368 , pp. 1685-1694
    • Janssen, H.L.1
  • 45
    • 79951476167 scopus 로고    scopus 로고
    • HSPC117 is the essential subunit of a human tRNA splicing ligase complex
    • Popow, J. et al. HSPC117 is the essential subunit of a human tRNA splicing ligase complex. Science 331, 760-764 (2011).
    • (2011) Science , vol.331 , pp. 760-764
    • Popow, J.1
  • 46
    • 80052266532 scopus 로고    scopus 로고
    • MicroRNAs can generate thresholds in target gene expression
    • Mukherji, S. et al. MicroRNAs can generate thresholds in target gene expression. Nat. Genet. 43, 854-859 (2011).
    • (2011) Nat. Genet. , vol.43 , pp. 854-859
    • Mukherji, S.1
  • 47
    • 84901856551 scopus 로고    scopus 로고
    • Widespread context dependency of microRNA-mediated regulation
    • Erhard, F. et al. Widespread context dependency of microRNA-mediated regulation. Genome Res. 24, 906-919 (2014).
    • (2014) Genome Res. , vol.24 , pp. 906-919
    • Erhard, F.1
  • 48
    • 84894489246 scopus 로고    scopus 로고
    • Demystifying the nuclear function of Argonaute proteins
    • Huang, V. & Li, L. C. Demystifying the nuclear function of Argonaute proteins. RNA Biol. 11, 18-24 (2014).
    • (2014) RNA Biol. , vol.11 , pp. 18-24
    • Huang, V.1    Li, L.C.2
  • 49
    • 80053197539 scopus 로고    scopus 로고
    • Argonaute protein identity and pairing geometry determine cooperativity in mammalian RNA silencing
    • Broderick, J. A., Salomon, W. E., Ryder, S. P., Aronin, N. & Zamore, P. D. Argonaute protein identity and pairing geometry determine cooperativity in mammalian RNA silencing. RNA 17, 1858-1869 (2011).
    • (2011) RNA , vol.17 , pp. 1858-1869
    • Broderick, J.A.1    Salomon, W.E.2    Ryder, S.P.3    Aronin, N.4    Zamore, P.D.5
  • 50
    • 80755171166 scopus 로고    scopus 로고
    • A wide repertoire of miRNA binding sites: Prediction and functional implications
    • Elefant, N., Altuvia, Y. & Margalit, H. A wide repertoire of miRNA binding sites: prediction and functional implications. Bioinformatics 27, 3093-3101 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 3093-3101
    • Elefant, N.1    Altuvia, Y.2    Margalit, H.3
  • 51
    • 84899513644 scopus 로고    scopus 로고
    • Global coevolution of human microRNAs and their target genes
    • Barbash, S., Shifman, S. & Soreq, H. Global coevolution of human microRNAs and their target genes. Mol. Biol. Evol. 31, 1237-1247 (2014).
    • (2014) Mol. Biol. Evol. , vol.31 , pp. 1237-1247
    • Barbash, S.1    Shifman, S.2    Soreq, H.3
  • 52
    • 84863031552 scopus 로고    scopus 로고
    • Cell-type-based analysis of microRNA profiles in the mouse brain
    • He, M. et al. Cell-type-based analysis of microRNA profiles in the mouse brain. Neuron 73, 35-48 (2012).
    • (2012) Neuron , vol.73 , pp. 35-48
    • He, M.1
  • 53
    • 52949091534 scopus 로고    scopus 로고
    • The let-7 family of microRNAs
    • Roush, S. & Slack, F. J. The let-7 family of microRNAs. Trends Cell Biol. 18, 505-516 (2008).
    • (2008) Trends Cell Biol. , vol.18 , pp. 505-516
    • Roush, S.1    Slack, F.J.2
  • 54
    • 0242497663 scopus 로고    scopus 로고
    • CLIP identifies Nova-regulated RNA networks in the brain
    • Ule, J. et al. CLIP identifies Nova-regulated RNA networks in the brain. Science 302, 1212-1215 (2003).
    • (2003) Science , vol.302 , pp. 1212-1215
    • Ule, J.1
  • 55
    • 34748880173 scopus 로고    scopus 로고
    • A novel monoclonal antibody against human Argonaute proteins reveals unexpected characteristics of miRNAs in human blood cells
    • Nelson, P. T. et al. A novel monoclonal antibody against human Argonaute proteins reveals unexpected characteristics of miRNAs in human blood cells. RNA 13, 1787-1792 (2007).
    • (2007) RNA , vol.13 , pp. 1787-1792
    • Nelson, P.T.1
  • 56
    • 84869010693 scopus 로고    scopus 로고
    • RNAsnap: A rapid, quantitative and inexpensive, method for isolating total RNA from bacteria
    • Stead, M. B. et al. RNAsnap: a rapid, quantitative and inexpensive, method for isolating total RNA from bacteria. Nucleic Acids Res. 40, e156 (2012).
    • (2012) Nucleic Acids Res. , vol.40 , pp. e156
    • Stead, M.B.1
  • 57
    • 84924561760 scopus 로고    scopus 로고
    • Hepatitis C virus RNA functionally sequesters miR-122
    • Luna, J. M. et al. Hepatitis C virus RNA functionally sequesters miR-122. Cell 160, 1099-1110 (2015).
    • (2015) Cell , vol.160 , pp. 1099-1110
    • Luna, J.M.1
  • 58
    • 0036893332 scopus 로고    scopus 로고
    • Highly permissive cell lines for subgenomic and genomic hepatitis C virus RNA replication
    • Blight, K. J., McKeating, J. A. & Rice, C. M. Highly permissive cell lines for subgenomic and genomic hepatitis C virus RNA replication. J. Virol. 76, 13001-13014 (2002).
    • (2002) J. Virol. , vol.76 , pp. 13001-13014
    • Blight, K.J.1    McKeating, J.A.2    Rice, C.M.3
  • 59
    • 84865022311 scopus 로고    scopus 로고
    • Primer3-new capabilities and interfaces
    • Untergasser, A. et al. Primer3-new capabilities and interfaces. Nucleic Acids Res. 40, e115 (2012).
    • (2012) Nucleic Acids Res. , vol.40 , pp. e115
    • Untergasser, A.1
  • 60
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. L. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 61
    • 84883368195 scopus 로고    scopus 로고
    • Software for computing and annotating genomic ranges
    • Lawrence, M. et al. Software for computing and annotating genomic ranges. PLoS Comput. Biol. 9, e1003118 (2013).
    • (2013) PLoS Comput. Biol. , vol.9 , pp. e1003118
    • Lawrence, M.1
  • 62
    • 58649113420 scopus 로고    scopus 로고
    • Enhancement of the seed-target recognition step in RNA silencing by a PIWI/MID domain protein
    • Parker, J. S., Parizotto, E. A., Wang, M., Roe, S. M. & Barford, D. Enhancement of the seed-target recognition step in RNA silencing by a PIWI/MID domain protein. Mol. Cell 33, 204-214 (2009).
    • (2009) Mol. Cell , vol.33 , pp. 204-214
    • Parker, J.S.1    Parizotto, E.A.2    Wang, M.3    Roe, S.M.4    Barford, D.5
  • 64
    • 9444225935 scopus 로고    scopus 로고
    • Java Treeview-extensible visualization of microarray data
    • Saldanha, A. J. Java Treeview-extensible visualization of microarray data. Bioinformatics 20, 3246-3248 (2004).
    • (2004) Bioinformatics , vol.20 , pp. 3246-3248
    • Saldanha, A.J.1
  • 65
    • 75549089967 scopus 로고    scopus 로고
    • The UCSC Genome Browser database: Update 2010
    • Rhead, B. et al. The UCSC Genome Browser database: update 2010. Nucleic Acids Res. 38, D613-D619 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. D613-D619
    • Rhead, B.1
  • 66
    • 74949092081 scopus 로고    scopus 로고
    • Detection of nonneutral substitution rates on mammalian phylogenies
    • Pollard, K. S., Hubisz, M. J., Rosenbloom, K. R. & Siepel, A. Detection of nonneutral substitution rates on mammalian phylogenies. Genome Res. 20, 110-121 (2010).
    • (2010) Genome Res. , vol.20 , pp. 110-121
    • Pollard, K.S.1    Hubisz, M.J.2    Rosenbloom, K.R.3    Siepel, A.4
  • 67
    • 84885008898 scopus 로고    scopus 로고
    • High-efficiency RNA cloning enables accurate quantification of miRNA expression by deep sequencing
    • Zhang, Z., Lee, J. E., Riemondy, K., Anderson, E. M. & Yi, R. High-efficiency RNA cloning enables accurate quantification of miRNA expression by deep sequencing. Genome Biol. 14, R109 (2013).
    • (2013) Genome Biol. , vol.14 , pp. R109
    • Zhang, Z.1    Lee, J.E.2    Riemondy, K.3    Anderson, E.M.4    Yi, R.5
  • 68
    • 84891883182 scopus 로고    scopus 로고
    • MicroRNA-181a has a critical role in ovarian cancer progression through the regulation of the epithelial-mesenchymal transition
    • Parikh, A. et al. microRNA-181a has a critical role in ovarian cancer progression through the regulation of the epithelial-mesenchymal transition. Nat. Commun. 5, 2977 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 2977
    • Parikh, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.