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Volumn 27, Issue 4, 2013, Pages 378-389

Two new and distinct roles for Drosophila Argonaute-2 in the nucleus: Alternative pre-mRNA splicing and transcriptional repression

Author keywords

Alternative splicing; Argonaute; Drosophila; RNA; Transcription

Indexed keywords

ARGONAUTE 2 PROTEIN; MESSENGER RNA PRECURSOR; POLYCOMB GROUP PROTEIN;

EID: 84874279332     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.210708.112     Document Type: Article
Times cited : (87)

References (56)
  • 3
    • 30044441988 scopus 로고    scopus 로고
    • The human SWI/SNF subunit Brm is a regulator of alternative splicing
    • Batsche E., Yaniv M, Muchardt C. 2006. The human SWI/SNF subunit Brm is a regulator of alternative splicing. Nat Struct Mol Biol 13: 22-29.
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 22-29
    • Batsche, E.1    Yaniv, M.2    Muchardt, C.3
  • 4
    • 22344458119 scopus 로고    scopus 로고
    • Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila
    • Blanchette M., Green RE, Brenner SE, Rio DC. 2005. Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila. Genes Dev 19: 1306-1314.
    • (2005) Genes Dev , vol.19 , pp. 1306-1314
    • Blanchette, M.1    Green, R.E.2    Brenner, S.E.3    Rio, D.C.4
  • 5
    • 60549097502 scopus 로고    scopus 로고
    • Genome-wide analysis of alternative pre-mRNA splicing and RNA-binding specificities of the Drosophila hnRNP A/B family members
    • Blanchette M., Green RE, MacArthur S, Brooks AN, Brenner SE, Eisen MB., Rio DC. 2009. Genome-wide analysis of alternative pre-mRNA splicing and RNA-binding specificities of the Drosophila hnRNP A/B family members. Mol Cell 33: 438-449.
    • (2009) Mol Cell , vol.33 , pp. 438-449
    • Blanchette, M.1    Green, R.E.2    McArthur, S.3    Brooks, A.N.4    Brenner, S.E.5    Eisen, M.B.6    Rio, D.C.7
  • 7
    • 35848962284 scopus 로고    scopus 로고
    • Transcription and RNAi in heterochromatic gene silencing
    • Buhler M., Moazed D. 2007. Transcription and RNAi in heterochromatic gene silencing. Nat Struct Mol Biol 14: 1041-1048.
    • (2007) Nat Struct Mol Biol , vol.14 , pp. 1041-1048
    • Buhler, M.1    Moazed, D.2
  • 10
    • 67749132423 scopus 로고    scopus 로고
    • Argonaute HITSCLIP decodes microRNA-mRNA interaction maps
    • Chi SW., Zang JB, Mele A, Darnell RB. 2009. Argonaute HITSCLIP decodes microRNA-mRNA interaction maps. Nature 460: 479-486.
    • (2009) Nature , vol.460 , pp. 479-486
    • Chi, S.W.1    Zang, J.B.2    Mele, A.3    Darnell, R.B.4
  • 11
    • 60149095014 scopus 로고    scopus 로고
    • Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
    • Cuddapah S., Jothi R, Schones DE, Roh TY, Cui K, Zhao K. 2009. Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Res 19: 24-32.
    • (2009) Genome Res , vol.19 , pp. 24-32
    • Cuddapah, S.1    Jothi, R.2    Schones, D.E.3    Roh, T.Y.4    Cui, K.5    Zhao, K.6
  • 13
    • 44449104974 scopus 로고    scopus 로고
    • Polycomb group proteins Ring1A/B are functionally linked to the core transcriptional regulatory circuitry to maintain ES cell identity
    • Endoh M., Endo TA, Endoh T, Fujimura Y, Ohara O, Toyoda T, Otte AP., Okano M, Brockdorff N, Vidal M, et al. 2008. Polycomb group proteins Ring1A/B are functionally linked to the core transcriptional regulatory circuitry to maintain ES cell identity. Development 135: 1513-1524.
    • (2008) Development , vol.135 , pp. 1513-1524
    • Endoh, M.1    Endo, T.A.2    Endoh, T.3    Fujimura, Y.4    Ohara, O.5    Toyoda, T.6    Otte, A.P.7    Okano, M.8    Brockdorff, N.9    Vidal, M.10
  • 14
    • 34447291764 scopus 로고    scopus 로고
    • Drosophila microRNAs are sorted into functionally distinct argonaute complexes after production by dicer-1
    • Forstemann K., Horwich MD, Wee L, Tomari Y, Zamore PD. 2007. Drosophila microRNAs are sorted into functionally distinct argonaute complexes after production by dicer-1. Cell 130: 287-297.
    • (2007) Cell , vol.130 , pp. 287-297
    • Forstemann, K.1    Horwich, M.D.2    Wee, L.3    Tomari, Y.4    Zamore, P.D.5
  • 16
    • 33644770293 scopus 로고    scopus 로고
    • RNAi components are required for nuclear clustering of Polycomb group response elements
    • Grimaud C., Bantignies F, Pal-Bhadra M, Ghana P, Bhadra U, Cavalli G. 2006. RNAi components are required for nuclear clustering of Polycomb group response elements. Cell 124: 957-971.
    • (2006) Cell , vol.124 , pp. 957-971
    • Grimaud, C.1    Bantignies, F.2    Pal-Bhadra, M.3    Ghana, P.4    Bhadra, U.5    Cavalli, G.6
  • 18
    • 77950202393 scopus 로고    scopus 로고
    • Human tRNA-derived small RNAs in the global regulation of RNA silencing
    • Haussecker D., Huang Y, Lau A, Parameswaran P, Fire AZ, Kay MA. 2010. Human tRNA-derived small RNAs in the global regulation of RNA silencing. RNA 16: 673-695.
    • (2010) RNA , vol.16 , pp. 673-695
    • Haussecker, D.1    Huang, Y.2    Lau, A.3    Parameswaran, P.4    Fire, A.Z.5    Kay, M.A.6
  • 19
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz S., Benner C, Spann N, Bertolino E, Lin YC, Laslo P, Cheng JX, Murre C, Singh H, Glass CK. 2010. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 38: 576-589.
    • (2010) Mol Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6    Cheng, J.X.7    Murre, C.8    Singh, H.9    Glass, C.K.10
  • 20
    • 77955894067 scopus 로고    scopus 로고
    • Antisense correction of SMN2 splicing in the CNS rescues necrosis in a type III SMA mouse model
    • Hua Y., Sahashi K, Hung G, Rigo F, Passini MA, Bennett CF, Krainer AR. 2010. Antisense correction of SMN2 splicing in the CNS rescues necrosis in a type III SMA mouse model. Genes Dev 24: 1634-1644.
    • (2010) Genes Dev , vol.24 , pp. 1634-1644
    • Hua, Y.1    Sahashi, K.2    Hung, G.3    Rigo, F.4    Passini, M.A.5    Bennett, C.F.6    Krainer, A.R.7
  • 21
    • 80053902729 scopus 로고    scopus 로고
    • Peripheral SMN restoration is essential for longterm rescue of a severe spinal muscular atrophy mouse model
    • Hua Y., Sahashi K, Rigo F, Hung G, Horev G, Bennett CF, Krainer AR. 2011. Peripheral SMN restoration is essential for longterm rescue of a severe spinal muscular atrophy mouse model. Nature 478: 123-126.
    • (2011) Nature , vol.478 , pp. 123-126
    • Hua, Y.1    Sahashi, K.2    Rigo, F.3    Hung, G.4    Horev, G.5    Bennett, C.F.6    Krainer, A.R.7
  • 25
    • 33845890037 scopus 로고    scopus 로고
    • Conversion of pre-RISC to holo-RISC by Ago2 during assembly of RNAi complexes
    • Kim K., Lee YS, Carthew RW. 2007. Conversion of pre-RISC to holo-RISC by Ago2 during assembly of RNAi complexes. RNA 13: 22-29.
    • (2007) RNA , vol.13 , pp. 22-29
    • Kim, K.1    Lee, Y.S.2    Carthew, R.W.3
  • 26
    • 30844442607 scopus 로고    scopus 로고
    • The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C
    • Kishore S., Stamm S. 2006. The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. Science 311: 230-232.
    • (2006) Science , vol.311 , pp. 230-232
    • Kishore, S.1    Stamm, S.2
  • 30
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B., Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 31
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • Lee RC., Feinbaum RL, Ambros V. 1993. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75: 843-854.
    • (1993) Cell , vol.75 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 32
  • 35
    • 28444437427 scopus 로고    scopus 로고
    • Slicer function of Drosophila Argonautes and its involvement in RISC formation
    • Miyoshi K., Tsukumo H, Nagami T, Siomi H, Siomi MC. 2005. Slicer function of Drosophila Argonautes and its involvement in RISC formation. Genes Dev 19: 2837-2848.
    • (2005) Genes Dev , vol.19 , pp. 2837-2848
    • Miyoshi, K.1    Tsukumo, H.2    Nagami, T.3    Siomi, H.4    Siomi, M.C.5
  • 36
    • 84860388943 scopus 로고    scopus 로고
    • RNAi-independent role for Argonaute2 in CTCF/ CP190 chromatin insulator function
    • Moshkovich N., Nisha P, Boyle PJ, Thompson BA, Dale RK, Lei EP. 2011. RNAi-independent role for Argonaute2 in CTCF/ CP190 chromatin insulator function. Genes Dev 25: 1686-1701.
    • (2011) Genes Dev , vol.25 , pp. 1686-1701
    • Moshkovich, N.1    Nisha, P.2    Boyle, P.J.3    Thompson, B.A.4    Dale, R.K.5    Lei, E.P.6
  • 37
    • 0025287621 scopus 로고
    • Purification and characterization of proteins of heterogeneous nuclear ribonucleoprotein complexes by affinity chromatography
    • Pinol-Roma S, Swanson MS, Matunis MJ, Dreyfuss G. 1990. Purification and characterization of proteins of heterogeneous nuclear ribonucleoprotein complexes by affinity chromatography. Methods Enzymol 181: 326-331.
    • (1990) Methods Enzymol , vol.181 , pp. 326-331
    • Pinol-Roma, S.1    Swanson, M.S.2    Matunis, M.J.3    Dreyfuss, G.4
  • 38
    • 84863654457 scopus 로고    scopus 로고
    • Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing
    • Pradeepa MM., Sutherland HG, Ule J, Grimes GR, BickmoreWA. 2012. Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing. PLoS Genet 8: e1002717.
    • (2012) PLoS Genet , vol.8
    • Pradeepa, M.M.1    Sutherland, H.G.2    Ule, J.3    Grimes, G.R.4    Bickmore, W.A.5
  • 39
    • 84863580984 scopus 로고    scopus 로고
    • Drosophila Argonaute-1 is critical for transcriptional cosuppression and heterochromatin formation
    • Pushpavalli SN., Bag I, Pal-Bhadra M, Bhadra U. 2012. Drosophila Argonaute-1 is critical for transcriptional cosuppression and heterochromatin formation. Chromosome Res 20: 333-351.
    • (2012) Chromosome Res , vol.20 , pp. 333-351
    • Pushpavalli, S.N.1    Bag, I.2    Pal-Bhadra, M.3    Bhadra, U.4
  • 41
    • 70349871718 scopus 로고    scopus 로고
    • CEAS: Cis-regulatory element annotation system
    • Shin H., Liu T, Manrai AK, Liu XS. 2009. CEAS: Cis-regulatory element annotation system. Bioinformatics 25: 2605-2606.
    • (2009) Bioinformatics , vol.25 , pp. 2605-2606
    • Shin, H.1    Liu, T.2    Manrai, A.K.3    Liu, X.S.4
  • 42
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Article 3
    • Smyth GK. 2004. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article 3.
    • (2004) Stat Appl Genet Mol Biol , vol.3
    • Smyth, G.K.1
  • 43
    • 70350013550 scopus 로고    scopus 로고
    • Biased chromatin signatures around polyadenylation sites and exons
    • Spies N., Nielsen CB, Padgett RA, Burge CB. 2009. Biased chromatin signatures around polyadenylation sites and exons. Mol Cell 36: 245-254.
    • (2009) Mol Cell , vol.36 , pp. 245-254
    • Spies, N.1    Nielsen, C.B.2    Padgett, R.A.3    Burge, C.B.4
  • 46
    • 34447642555 scopus 로고    scopus 로고
    • Sorting of Drosophila small silencing RNAs
    • Tomari Y., Du T, Zamore PD. 2007. Sorting of Drosophila small silencing RNAs. Cell 130: 299-308.
    • (2007) Cell , vol.130 , pp. 299-308
    • Tomari, Y.1    Du, T.2    Zamore, P.D.3
  • 47
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-seq
    • Trapnell C., Pachter L, Salzberg SL. 2009. TopHat: Discovering splice junctions with RNA-seq. Bioinformatics 25: 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 52
    • 0027730383 scopus 로고
    • Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans
    • Wightman B., Ha I, Ruvkun G. 1993. Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans. Cell 75: 855-862.
    • (1993) Cell , vol.75 , pp. 855-862
    • Wightman, B.1    Ha, I.2    Ruvkun, G.3
  • 53
    • 2942715357 scopus 로고    scopus 로고
    • The fragile X-related gene affects the crawling behavior of Drosophila larvae by regulating the mRNA level of the DEG/ENaC protein pickpocket1
    • Xu K., Bogert BA, Li W, Su K, Lee A, Gao FB. 2004. The fragile X-related gene affects the crawling behavior of Drosophila larvae by regulating the mRNA level of the DEG/ENaC protein pickpocket1. Curr Biol 14: 1025-1034.
    • (2004) Curr Biol , vol.14 , pp. 1025-1034
    • Xu, K.1    Bogert, B.A.2    Li, W.3    Su, K.4    Lee, A.5    Gao, F.B.6
  • 55
    • 55949117057 scopus 로고    scopus 로고
    • Comparative analysis of argonaute-dependent small RNA pathways in Drosophila
    • Zhou R., Hotta I, Denli AM, Hong P, Perrimon N, Hannon GJ. 2008. Comparative analysis of argonaute-dependent small RNA pathways in Drosophila. Mol Cell 32: 592-599.
    • (2008) Mol Cell , vol.32 , pp. 592-599
    • Zhou, R.1    Hotta, I.2    Denli, A.M.3    Hong, P.4    Perrimon, N.5    Hannon, G.J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.