-
2
-
-
84871751049
-
Effects of PCR cycle number and DNA polymerase type on the 16S rRNA gene pyrosequencing analysis of bacterial communities
-
Ahn JH, Kim BY, Song J, Weon HY. 2012. Effects of PCR cycle number and DNA polymerase type on the 16S rRNA gene pyrosequencing analysis of bacterial communities. Journal of Microbiology 50:1071-1074.
-
(2012)
Journal of Microbiology
, vol.50
, pp. 1071-1074
-
-
Ahn, J.H.1
Kim, B.Y.2
Song, J.3
Weon, H.Y.4
-
4
-
-
58949083369
-
Two-step multiplex polymerase chain reaction improves the speed and accuracy of genotyping using DNA from noninvasive and museum samples
-
Arandjelovic M, Guschanski K, Schubert G, et al. 2009. Two-step multiplex polymerase chain reaction improves the speed and accuracy of genotyping using DNA from noninvasive and museum samples. Molecular Ecology Resources 9:28-36.
-
(2009)
Molecular Ecology Resources
, vol.9
, pp. 28-36
-
-
Arandjelovic, M.1
Guschanski, K.2
Schubert, G.3
-
5
-
-
84940203956
-
Detection dog efficacy for collecting faecal samples from the critically endangered Cross River gorilla (Gorilla gorilla diehli) for genetic censusing
-
Arandjelovic M, Bergl RA, Ikfuingei R, et al. 2015. Detection dog efficacy for collecting faecal samples from the critically endangered Cross River gorilla (Gorilla gorilla diehli) for genetic censusing. Royal Society Open Science 2:140423.
-
(2015)
Royal Society Open Science
, vol.2
, pp. 140423
-
-
Arandjelovic, M.1
Bergl, R.A.2
Ikfuingei, R.3
-
7
-
-
77949340359
-
Methods for MHC genotyping in non-model vertebrates
-
Babik W. 2010. Methods for MHC genotyping in non-model vertebrates. Molecular Ecology Recourses 10:237-251.
-
(2010)
Molecular Ecology Recourses
, vol.10
, pp. 237-251
-
-
Babik, W.1
-
8
-
-
65249087333
-
New generation sequencers as a tool for genotyping of highly polymorphic multilocus MHC system
-
Babik W, Taberlet P, Ejsmond MJ, Radwan J. 2009. New generation sequencers as a tool for genotyping of highly polymorphic multilocus MHC system. Molecular Ecology Resources 9:713-719.
-
(2009)
Molecular Ecology Resources
, vol.9
, pp. 713-719
-
-
Babik, W.1
Taberlet, P.2
Ejsmond, M.J.3
Radwan, J.4
-
9
-
-
70350043898
-
High-resolution, high-throughput HLA genotyping by next-generation sequencing
-
Bentley G, Higuchi R, Hoglund B, et al. 2009. High-resolution, high-throughput HLA genotyping by next-generation sequencing. Tissue Antigens 74:393-403.
-
(2009)
Tissue Antigens
, vol.74
, pp. 393-403
-
-
Bentley, G.1
Higuchi, R.2
Hoglund, B.3
-
10
-
-
53049084468
-
Effects of habitat fragmentation, population size and demographic history on genetic diversity: the Cross River gorilla in a comparative context
-
Bergl RA, Bradley BJ, Nsubuga A, Vigilant L. 2008. Effects of habitat fragmentation, population size and demographic history on genetic diversity: the Cross River gorilla in a comparative context. American Journal of Primatology 70:848-859.
-
(2008)
American Journal of Primatology
, vol.70
, pp. 848-859
-
-
Bergl, R.A.1
Bradley, B.J.2
Nsubuga, A.3
Vigilant, L.4
-
12
-
-
0022340433
-
HLA-DR beta genes vary in number between different DR specificities, whereas the number of DQ beta genes is constant
-
Böhme J, Andersson M, Andersson G, et al. 1985. HLA-DR beta genes vary in number between different DR specificities, whereas the number of DQ beta genes is constant. Journal of Immunology 135:2149-2155.
-
(1985)
Journal of Immunology
, vol.135
, pp. 2149-2155
-
-
Böhme, J.1
Andersson, M.2
Andersson, G.3
-
13
-
-
0028366206
-
Nonhuman primate MHC-DQA and -DQB second exon nucleotide sequences: a compilation
-
Bontrop RE. 1994. Nonhuman primate MHC-DQA and -DQB second exon nucleotide sequences: a compilation. Immunogenetics 39:81-92.
-
(1994)
Immunogenetics
, vol.39
, pp. 81-92
-
-
Bontrop, R.E.1
-
15
-
-
84923201165
-
Effect of the enzyme and PCR conditions on the quality of high-throughput DNA sequencing results
-
Brandariz-Fontes C, Camacho-Sanchez M, Vilà C, et al. 2015. Effect of the enzyme and PCR conditions on the quality of high-throughput DNA sequencing results. Scientific Reports 5:8056.
-
(2015)
Scientific Reports
, vol.5
, pp. 8056
-
-
Brandariz-Fontes, C.1
Camacho-Sanchez, M.2
Vilà, C.3
-
16
-
-
0026533255
-
Trans-species evolution of MHC-DRB haplotype polymorphism in primates: organization of DRB genes in the chimpanzee
-
Brändle U, Ono H, Vincek V, et al. 1992. Trans-species evolution of MHC-DRB haplotype polymorphism in primates: organization of DRB genes in the chimpanzee. Immunogenetics 36:39-48.
-
(1992)
Immunogenetics
, vol.36
, pp. 39-48
-
-
Brändle, U.1
Ono, H.2
Vincek, V.3
-
17
-
-
0026486036
-
Allelic diversity at the primate major histocompatibility complex DRB6 locus
-
Corell A1, Morales P, Varela P, et al. 1992. Allelic diversity at the primate major histocompatibility complex DRB6 locus. Immunogenetics 36:33-38.
-
(1992)
Immunogenetics
, vol.36
, pp. 33-38
-
-
Corell, A.1
Morales, P.2
Varela, P.3
-
18
-
-
84857271408
-
Length and GC-biases during sequencing library amplification: a comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries
-
Dabney J, Meyer M. 2012. Length and GC-biases during sequencing library amplification: a comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries. Biotechniques 52:87-94.
-
(2012)
Biotechniques
, vol.52
, pp. 87-94
-
-
Dabney, J.1
Meyer, M.2
-
20
-
-
42049107313
-
Pinpointing a selective sweep to the chimpanzee MHC class I region by comparative genomics
-
de Groot NG, Heijmans CM, de Groot N, et al. 2008. Pinpointing a selective sweep to the chimpanzee MHC class I region by comparative genomics. Molecular Ecology 17:2074-2088.
-
(2008)
Molecular Ecology
, vol.17
, pp. 2074-2088
-
-
de Groot, N.G.1
Heijmans, C.M.2
de Groot, N.3
-
21
-
-
70450222521
-
The chimpanzee MHC-DRB region revisited: gene content, polymorphism, pseudogenes, and transcripts
-
de Groot NG, Heijmans CM, de Groot N, et al. 2009. The chimpanzee MHC-DRB region revisited: gene content, polymorphism, pseudogenes, and transcripts. Molecular Immunology 47:381-389.
-
(2009)
Molecular Immunology
, vol.47
, pp. 381-389
-
-
de Groot, N.G.1
Heijmans, C.M.2
de Groot, N.3
-
22
-
-
77956994615
-
AIDS-protective HLA-B*27/B*57 and chimpanzee MHC class I molecules target analogous conserved areas of HIV-1/SIVcpz
-
de Groot NG, Heijmans CM, Zoet YM, et al. 2010. AIDS-protective HLA-B*27/B*57 and chimpanzee MHC class I molecules target analogous conserved areas of HIV-1/SIVcpz. Proceedings of the National Academy of Sciences 107:15175-15180.
-
(2010)
Proceedings of the National Academy of Sciences
, vol.107
, pp. 15175-15180
-
-
de Groot, N.G.1
Heijmans, C.M.2
Zoet, Y.M.3
-
23
-
-
84864279624
-
Nomenclature report on the major histocompatibility complex genes and alleles of Great Ape, Old and New World monkey species
-
de Groot NG, Otting N, Robinson J, et al. 2012. Nomenclature report on the major histocompatibility complex genes and alleles of Great Ape, Old and New World monkey species. Immunogenetics 64:615-631.
-
(2012)
Immunogenetics
, vol.64
, pp. 615-631
-
-
de Groot, N.G.1
Otting, N.2
Robinson, J.3
-
24
-
-
0025743732
-
'Touchdown' PCR to circumvent spurious priming during gene amplification
-
Don RH, Cox PT, Wainwright BJ, Baker K, Mattick JS. 1991. 'Touchdown' PCR to circumvent spurious priming during gene amplification. Nucleic Acids Research 19:4008.
-
(1991)
Nucleic Acids Research
, vol.19
, pp. 4008
-
-
Don, R.H.1
Cox, P.T.2
Wainwright, B.J.3
Baker, K.4
Mattick, J.S.5
-
25
-
-
33645835695
-
Reactivation by exon shuffling of a conserved HLA-DR3-like pseudogene segment in a New World primate species
-
Doxiadis GG, van der Wiel MK, Brok HP, et al. 2006. Reactivation by exon shuffling of a conserved HLA-DR3-like pseudogene segment in a New World primate species. Proceedings of the National Academy of Sciences 103:5864-5868.
-
(2006)
Proceedings of the National Academy of Sciences
, vol.103
, pp. 5864-5868
-
-
Doxiadis, G.G.1
van der Wiel, M.K.2
Brok, H.P.3
-
26
-
-
41849112654
-
Reshuffling of ancient peptide binding motifs between HLA-DRB multigene family members: old wine served in new skins
-
Doxiadis GG, de Groot N, de Groot NG, Doxiadis II, Bontrop RE. 2008. Reshuffling of ancient peptide binding motifs between HLA-DRB multigene family members: old wine served in new skins. Molecular Immunology 45:2743-2751.
-
(2008)
Molecular Immunology
, vol.45
, pp. 2743-2751
-
-
Doxiadis, G.G.1
de Groot, N.2
de Groot, N.G.3
Doxiadis, I.I.4
Bontrop, R.E.5
-
27
-
-
0024468745
-
Shared class II MHC polymorphisms between humans and chimpanzees
-
Fan WM, Kasahara M, Gutknecht J, et al. 1989. Shared class II MHC polymorphisms between humans and chimpanzees. Human Immunology 26:107-121.
-
(1989)
Human Immunology
, vol.26
, pp. 107-121
-
-
Fan, W.M.1
Kasahara, M.2
Gutknecht, J.3
-
28
-
-
0038515416
-
Reliable noninvasive genotyping: fantasy or reality
-
Fernando P, Vidya TN, Rajapakse C, Dangolla A, Melnick DJ. 2003. Reliable noninvasive genotyping: fantasy or reality. Journal of Heredity 94:115-123.
-
(2003)
Journal of Heredity
, vol.94
, pp. 115-123
-
-
Fernando, P.1
Vidya, T.N.2
Rajapakse, C.3
Dangolla, A.4
Melnick, D.J.5
-
29
-
-
84928209003
-
Large-scale genotyping of highly polymorphic loci by next-generation sequencing: how to overcome the challenges to reliably genotype individuals
-
Ferrandiz-Rovira M, Bigot T, Allainé D, Callait-Cardinal MP, Cohas A. 2015. Large-scale genotyping of highly polymorphic loci by next-generation sequencing: how to overcome the challenges to reliably genotype individuals. Heredity 114:485-493.
-
(2015)
Heredity
, vol.114
, pp. 485-493
-
-
Ferrandiz-Rovira, M.1
Bigot, T.2
Allainé, D.3
Callait-Cardinal, M.P.4
Cohas, A.5
-
30
-
-
0026075261
-
Primate DRB6 pseudogenes: clue to the evolutionary origin of the HLA-DR2 haplotype
-
Figueroa F, O'hUigin C, Inoki H, Klein J. 1991. Primate DRB6 pseudogenes: clue to the evolutionary origin of the HLA-DR2 haplotype. Immunogenetics 34:324-337.
-
(1991)
Immunogenetics
, vol.34
, pp. 324-337
-
-
Figueroa, F.1
O'hUigin, C.2
Inoki, H.3
Klein, J.4
-
31
-
-
84939564255
-
The geographic distribution of genetic diversity within gorillas
-
Fünfstück T, Vigilant L. 2015. The geographic distribution of genetic diversity within gorillas. American Journal of Primatology. doi: 10.1002/ajp.22427.
-
(2015)
American Journal of Primatology
-
-
Fünfstück, T.1
Vigilant, L.2
-
32
-
-
84906317076
-
The genetic population structure of wild western lowland gorillas (Gorilla gorilla gorilla) living in continuous rain forest
-
Fünfstück T, Arandjelovic M, Morgan DB, et al. 2014. The genetic population structure of wild western lowland gorillas (Gorilla gorilla gorilla) living in continuous rain forest. American Journal of Primatology 76:868-878.
-
(2014)
American Journal of Primatology
, vol.76
, pp. 868-878
-
-
Fünfstück, T.1
Arandjelovic, M.2
Morgan, D.B.3
-
33
-
-
77951973196
-
A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies
-
Galan M, Guivier E, Caraux G, Charbonnel N, Cosson JF. 2010. A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies. BMC Genomics 11:296.
-
(2010)
BMC Genomics
, vol.11
, pp. 296
-
-
Galan, M.1
Guivier, E.2
Caraux, G.3
Charbonnel, N.4
Cosson, J.F.5
-
35
-
-
84870320873
-
Genetic census reveals increased but uneven growth of a critically endangered mountain gorilla population
-
Gray M, Roy J, Vigilant L, et al. 2013. Genetic census reveals increased but uneven growth of a critically endangered mountain gorilla population. Biological Conservation 158:230-238.
-
(2013)
Biological Conservation
, vol.158
, pp. 230-238
-
-
Gray, M.1
Roy, J.2
Vigilant, L.3
-
36
-
-
0004084108
-
-
Washington, DC: Smithsonian Institution Press.
-
Groves C. 2001. Primate taxonomy. Washington, DC: Smithsonian Institution Press.
-
(2001)
Primate taxonomy
-
-
Groves, C.1
-
39
-
-
0029921170
-
Rapid allelic diversification and intensified selection at antigen recognition sites of the MHC class II DPB1 locus during hominoid evolution
-
Gyllensten U, Bergström T, Josefsson A, Sundvall M, Erlich HA. 1996. Rapid allelic diversification and intensified selection at antigen recognition sites of the MHC class II DPB1 locus during hominoid evolution. Tissue Antigens 47:212-221.
-
(1996)
Tissue Antigens
, vol.47
, pp. 212-221
-
-
Gyllensten, U.1
Bergström, T.2
Josefsson, A.3
Sundvall, M.4
Erlich, H.A.5
-
40
-
-
0029923481
-
High and low annealing temperatures increase both specificity and yield in touchdown and stepdown PCR
-
Hecker KH, Roux KH. 1996. High and low annealing temperatures increase both specificity and yield in touchdown and stepdown PCR. Biotechniques 20:478-485.
-
(1996)
Biotechniques
, vol.20
, pp. 478-485
-
-
Hecker, K.H.1
Roux, K.H.2
-
41
-
-
84890731574
-
Next-generation sequencing can reveal in vitro-generated PCR crossover products: some artifactual sequences correspond to HLA alleles in the IMGT/HLA database
-
Holcomb CL, Rastrou M, Williams TC, et al. 2014. Next-generation sequencing can reveal in vitro-generated PCR crossover products: some artifactual sequences correspond to HLA alleles in the IMGT/HLA database. Tissue Antigens 83:32-40.
-
(2014)
Tissue Antigens
, vol.83
, pp. 32-40
-
-
Holcomb, C.L.1
Rastrou, M.2
Williams, T.C.3
-
42
-
-
5044240973
-
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
-
Huber T, Faulkner G, Hugenholtz P. 2004. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20:2317-2319.
-
(2004)
Bioinformatics
, vol.20
, pp. 2317-2319
-
-
Huber, T.1
Faulkner, G.2
Hugenholtz, P.3
-
43
-
-
84893723745
-
The major histocompatibility complex and primate behavioral ecology: new tools and future questions
-
Huchard E, Pechouskova E. 2014. The major histocompatibility complex and primate behavioral ecology: new tools and future questions. International Journal of Primatology 35:11-31.
-
(2014)
International Journal of Primatology
, vol.35
, pp. 11-31
-
-
Huchard, E.1
Pechouskova, E.2
-
44
-
-
84879158601
-
IUCN Red List of Threatened Species
-
v2014.3. Downloaded on 19 March 2014.
-
IUCN. 2014. IUCN Red List of Threatened Species. v2014.3. http://www.iucnredlist.org. Downloaded on 19 March 2014.
-
(2014)
-
-
-
45
-
-
0000732090
-
Evolution of protein molecules
-
Munro HN, editor. New York: Academic Press.
-
Jukes TH, Cantor CR. 1969. Evolution of protein molecules. In: Munro HN, editor. Mammalian protein metabolism. New York: Academic Press. p 21-132.
-
(1969)
Mammalian protein metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
46
-
-
84867399950
-
Recent decline in suitable environmental conditions for African great apes
-
Junker J, Blake S, Boesch C, et al. 2012. Recent decline in suitable environmental conditions for African great apes. Diversity and Distributions 18:1077-1091.
-
(2012)
Diversity and Distributions
, vol.18
, pp. 1077-1091
-
-
Junker, J.1
Blake, S.2
Boesch, C.3
-
47
-
-
33847074909
-
Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment
-
Kalinowski ST, Taper ML, Marshall TC. 2007. Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Molecular Ecology 16:1099-1106.
-
(2007)
Molecular Ecology
, vol.16
, pp. 1099-1106
-
-
Kalinowski, S.T.1
Taper, M.L.2
Marshall, T.C.3
-
48
-
-
0344629203
-
Bias and artifacts in multitemplate polymerase chain reactions (PCR)
-
Kanagawa T. 2003. Bias and artifacts in multitemplate polymerase chain reactions (PCR). Journal of Bioscience and Bioengineering 96:317-323.
-
(2003)
Journal of Bioscience and Bioengineering
, vol.96
, pp. 317-323
-
-
Kanagawa, T.1
-
49
-
-
0026451287
-
Comparative anatomy of the primate major histocompatibility complex DR subregion: evidence for combinations of DRB genes conserved across species
-
Kasahara M, Klein D, Vincek V, Sarapata DE, Klein J. 1992. Comparative anatomy of the primate major histocompatibility complex DR subregion: evidence for combinations of DRB genes conserved across species. Genomics 14:340-349.
-
(1992)
Genomics
, vol.14
, pp. 340-349
-
-
Kasahara, M.1
Klein, D.2
Vincek, V.3
Sarapata, D.E.4
Klein, J.5
-
50
-
-
0026739894
-
MHC-DRB diversity of the chimpanzee (Pan troglodytes)
-
Kenter M, Otting N, Anholts J, et al. 1992. MHC-DRB diversity of the chimpanzee (Pan troglodytes). Immunogenetics 37:1-11.
-
(1992)
Immunogenetics
, vol.37
, pp. 1-11
-
-
Kenter, M.1
Otting, N.2
Anholts, J.3
-
51
-
-
0027314948
-
MHC-DRB and -DQA1 nucleotide sequences of three lowland gorillas: implications for the evolution of primate MHC class II haplotypes
-
Kenter M, Otting N, de Weers M, et al. 1993. MHC-DRB and -DQA1 nucleotide sequences of three lowland gorillas: implications for the evolution of primate MHC class II haplotypes. Human Immunology 36:205-218.
-
(1993)
Human Immunology
, vol.36
, pp. 205-218
-
-
Kenter, M.1
Otting, N.2
de Weers, M.3
-
52
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111-120.
-
(1980)
Journal of Molecular Evolution
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
53
-
-
84855295457
-
Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
-
Kircher M, Sawyer S, Meyer M. 2012. Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform. Nucleic Acids Research 40:e3.
-
(2012)
Nucleic Acids Research
, vol.40
, pp. e3
-
-
Kircher, M.1
Sawyer, S.2
Meyer, M.3
-
54
-
-
0025276271
-
Nomenclature for the major histocompatibility complexes of different species: a proposal
-
Klein J, Bontrop RE, Dawkins RL, et al. 1990. Nomenclature for the major histocompatibility complexes of different species: a proposal. Immunogenetics 31:217-219.
-
(1990)
Immunogenetics
, vol.31
, pp. 217-219
-
-
Klein, J.1
Bontrop, R.E.2
Dawkins, R.L.3
-
56
-
-
77951921954
-
Effects of an MHC-DRB genotype and allele number on the load of gut parasites in the bank vole Myodes glareolus
-
Kloch A, Babik W, Bajer A, Siński E, Radwan J. 2010. Effects of an MHC-DRB genotype and allele number on the load of gut parasites in the bank vole Myodes glareolus. Molecular Ecology 19:255-265.
-
(2010)
Molecular Ecology
, vol.19
, pp. 255-265
-
-
Kloch, A.1
Babik, W.2
Bajer, A.3
Siński, E.4
Radwan, J.5
-
57
-
-
0025305576
-
Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies
-
Kwok S, Kellogg DE, McKinney N, et al. 1990. Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies. Nucleic Acids Research 18:999-1005.
-
(1990)
Nucleic Acids Research
, vol.18
, pp. 999-1005
-
-
Kwok, S.1
Kellogg, D.E.2
McKinney, N.3
-
58
-
-
77954063233
-
How ebola impacts genetics of western lowland gorilla populations
-
Le Gouar PJ, Vallet D, David L, Bermejo M, et al. 2009. How ebola impacts genetics of western lowland gorilla populations. PloS ONE 4:e8375.
-
(2009)
PloS ONE
, vol.4
, pp. e8375
-
-
Le Gouar, P.J.1
Vallet, D.2
David, L.3
Bermejo, M.4
-
59
-
-
55149119144
-
Simple approach to reduce PCR artefact formation leads to reliable genotyping of MHC and other highly polymorphic loci: implications for evolutionary analysis
-
Lenz TL, Becker S. 2008. Simple approach to reduce PCR artefact formation leads to reliable genotyping of MHC and other highly polymorphic loci: implications for evolutionary analysis. Gene 427:117-123.
-
(2008)
Gene
, vol.427
, pp. 117-123
-
-
Lenz, T.L.1
Becker, S.2
-
60
-
-
84861337035
-
A new approach for detecting low-level mutations in next-generation sequence data
-
Li M, Stoneking M. 2012. A new approach for detecting low-level mutations in next-generation sequence data. Genome Biology 13:R34.
-
(2012)
Genome Biology
, vol.13
, pp. R34
-
-
Li, M.1
Stoneking, M.2
-
61
-
-
84902356894
-
Ultra-deep Illumina sequencing accurately identifies MHC class IIb alleles and provides evidence for copy number variation in the guppy (Poecilia reticulata)
-
Lighten J, van Oosterhout C, Paterson IG, McMullan M, Bentzen P. 2014. Ultra-deep Illumina sequencing accurately identifies MHC class IIb alleles and provides evidence for copy number variation in the guppy (Poecilia reticulata). Molecular Ecology Resources 14:753-767.
-
(2014)
Molecular Ecology Resources
, vol.14
, pp. 753-767
-
-
Lighten, J.1
van Oosterhout, C.2
Paterson, I.G.3
McMullan, M.4
Bentzen, P.5
-
62
-
-
84907546521
-
Extensive recombination due to heteroduplexes generates large amounts of artificial gene fragments during PCR
-
Liu J, Song H, Liu D, et al. 2014. Extensive recombination due to heteroduplexes generates large amounts of artificial gene fragments during PCR. PloS ONE 9:e106658.
-
(2014)
PloS ONE
, vol.9
, pp. e106658
-
-
Liu, J.1
Song, H.2
Liu, D.3
-
63
-
-
85068733521
-
Reply: facts, faeces and setting standards for the study of MHC genes using noninvasive samples
-
Lukas D, Vigilant L. 2005. Reply: facts, faeces and setting standards for the study of MHC genes using noninvasive samples. Molecular Ecology 14:1601-1602.
-
(2005)
Molecular Ecology
, vol.14
, pp. 1601-1602
-
-
Lukas, D.1
Vigilant, L.2
-
64
-
-
7044246146
-
Major histocompatibility complex and microsatellite variation in two populations of wild gorillas
-
Lukas D, Bradley BJ, Nsubuga AM, et al. 2004. Major histocompatibility complex and microsatellite variation in two populations of wild gorillas. Molecular Ecology 13:3389-3402.
-
(2004)
Molecular Ecology
, vol.13
, pp. 3389-3402
-
-
Lukas, D.1
Bradley, B.J.2
Nsubuga, A.M.3
-
65
-
-
84982082496
-
Inference of gorilla demographic and selective history from whole-genome sequence data
-
McManus KF, Kelley JL, Song S, et al. 2015. Inference of gorilla demographic and selective history from whole-genome sequence data. Molecular Biology and Evolution 32:600-612.
-
(2015)
Molecular Biology and Evolution
, vol.32
, pp. 600-612
-
-
McManus, K.F.1
Kelley, J.L.2
Song, S.3
-
66
-
-
77956285690
-
Illumina sequencing library preparation for highly multiplexed target capture and sequencing
-
pdbprot5448
-
Meyer M, Kircher M. 2010. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harbor Protocols 2010:pdb.prot5448.
-
(2010)
Cold Spring Harbor Protocols
, vol.2010
-
-
Meyer, M.1
Kircher, M.2
-
68
-
-
84945446145
-
-
Downloaded on 19 March 2014.
-
MiSeq Reporter User Guide. 2014. http://www.support.illumina.com. Downloaded on 19 March 2014.
-
(2014)
-
-
-
69
-
-
0031719262
-
Enhancement of PCR amplification yield and specificity using AmpliTaq Gold DNA polymerase
-
Moretti T, Koons B, Budowle B. 1998. Enhancement of PCR amplification yield and specificity using AmpliTaq Gold DNA polymerase. Biotechniques 25:716-722.
-
(1998)
Biotechniques
, vol.25
, pp. 716-722
-
-
Moretti, T.1
Koons, B.2
Budowle, B.3
-
70
-
-
0034915201
-
Quantitative polymerase chain reaction analysis of DNA from noninvasive samples for accurate microsatellite genotyping of wild chimpanzees (Pan troglodytes verus)
-
Morin PA, Chambers KE, Boesch C, Vigilant L. 2001. Quantitative polymerase chain reaction analysis of DNA from noninvasive samples for accurate microsatellite genotyping of wild chimpanzees (Pan troglodytes verus). Molecular Ecology 10:1835-1844.
-
(2001)
Molecular Ecology
, vol.10
, pp. 1835-1844
-
-
Morin, P.A.1
Chambers, K.E.2
Boesch, C.3
Vigilant, L.4
-
71
-
-
0026541338
-
A multiple-tubes approach for accurate genotyping of very small DNA samples by using PCR: statistical considerations
-
Navidi W, Arnheim N, Waterman MS. 1992. A multiple-tubes approach for accurate genotyping of very small DNA samples by using PCR: statistical considerations. American Journal of Human Genetics 50:347-359.
-
(1992)
American Journal of Human Genetics
, vol.50
, pp. 347-359
-
-
Navidi, W.1
Arnheim, N.2
Waterman, M.S.3
-
73
-
-
0029059015
-
Template-switching during DNA synthesis by Thermus aquaticus DNA polymerase I
-
Odelberg SJ, Weiss RB, Hata A, White R. 1995. Template-switching during DNA synthesis by Thermus aquaticus DNA polymerase I. Nucleic Acids Research 23:2049-2057.
-
(1995)
Nucleic Acids Research
, vol.23
, pp. 2049-2057
-
-
Odelberg, S.J.1
Weiss, R.B.2
Hata, A.3
White, R.4
-
74
-
-
0027184985
-
Nonhuman primate MHC-DRB sequences: a compilation
-
O'hUigin C, Bontrop R, Klein J. 1993. Nonhuman primate MHC-DRB sequences: a compilation. Immunogenetics 38:165-183.
-
(1993)
Immunogenetics
, vol.38
, pp. 165-183
-
-
O'hUigin, C.1
Bontrop, R.2
Klein, J.3
-
75
-
-
0028919208
-
Evolution of the major histocompatibility complex DPA1 locus in primates
-
Otting N, Bontrop BE. 1995. Evolution of the major histocompatibility complex DPA1 locus in primates. Human Immunology 42:184-187.
-
(1995)
Human Immunology
, vol.42
, pp. 184-187
-
-
Otting, N.1
Bontrop, B.E.2
-
76
-
-
0026659168
-
MHC-DQB repertoire variation in hominoid and Old World primate species
-
Otting N, Kenter M, van Weeren P, Jonker M, Bontrop RE. 1992. MHC-DQB repertoire variation in hominoid and Old World primate species. Journal of Immunology 149:461-470.
-
(1992)
Journal of Immunology
, vol.149
, pp. 461-470
-
-
Otting, N.1
Kenter, M.2
van Weeren, P.3
Jonker, M.4
Bontrop, R.E.5
-
77
-
-
0031752667
-
Characterization and distribution of MHC-DPB1 alleles in chimpanzee and rhesus macaque populations
-
Otting N1, Doxiadis GG, Versluis L, et al. 1998. Characterization and distribution of MHC-DPB1 alleles in chimpanzee and rhesus macaque populations. Human Immunology 59:656-664.
-
(1998)
Human Immunology
, vol.59
, pp. 656-664
-
-
Otting, N.1
Doxiadis, G.G.2
Versluis, L.3
-
78
-
-
0025230558
-
DNA damage promotes jumping between templates during enzymatic amplification
-
Pääbo S, Irwin DM, Wilson AC. 1990. DNA damage promotes jumping between templates during enzymatic amplification. The Journal of Biological Chemistry 265:4718-4721.
-
(1990)
The Journal of Biological Chemistry
, vol.265
, pp. 4718-4721
-
-
Pääbo, S.1
Irwin, D.M.2
Wilson, A.C.3
-
79
-
-
0030006049
-
Population biology of antigen presentation by MHC class I molecules
-
Parham P, Ohta T. 1996. Population biology of antigen presentation by MHC class I molecules. Science 272:67-74.
-
(1996)
Science
, vol.272
, pp. 67-74
-
-
Parham, P.1
Ohta, T.2
-
80
-
-
78650136812
-
Genomic-scale capture and sequencing of endogenous DNA from feces
-
Perry GH, Marioni JC, Melsted P, Gilad Y. 2010. Genomic-scale capture and sequencing of endogenous DNA from feces. Molecular Ecology 19:5332-5344.
-
(2010)
Molecular Ecology
, vol.19
, pp. 5332-5344
-
-
Perry, G.H.1
Marioni, J.C.2
Melsted, P.3
Gilad, Y.4
-
81
-
-
84881159598
-
Great ape genetic diversity and population history
-
Prado-Martinez J, Sudmant PH, Kidd JM, et al. 2013. Great ape genetic diversity and population history. Nature 499:471-475.
-
(2013)
Nature
, vol.499
, pp. 471-475
-
-
Prado-Martinez, J.1
Sudmant, P.H.2
Kidd, J.M.3
-
82
-
-
84856736609
-
Evaluation of two approaches to genotyping major histocompatibility complex class I in a passerine-CE-SSCP and 454 pyrosequencing
-
Promerová M, Babik W, Bryja J, et al. 2012. Evaluation of two approaches to genotyping major histocompatibility complex class I in a passerine-CE-SSCP and 454 pyrosequencing. Molecular Ecology Resources 12:285-292.
-
(2012)
Molecular Ecology Resources
, vol.12
, pp. 285-292
-
-
Promerová, M.1
Babik, W.2
Bryja, J.3
-
83
-
-
0035145056
-
Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning
-
Qiu X, Wu L, Huang H, et al. 2001. Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning. Applied and Environmental Microbiology 67:880-887.
-
(2001)
Applied and Environmental Microbiology
, vol.67
, pp. 880-887
-
-
Qiu, X.1
Wu, L.2
Huang, H.3
-
84
-
-
84922394220
-
leeHom: adaptor trimming and merging for Illumina sequencing reads
-
Renaud G, Stenzel U, Kelso J. 2014. leeHom: adaptor trimming and merging for Illumina sequencing reads. Nucleic Acids Research 42:141.
-
(2014)
Nucleic Acids Research
, vol.42
, pp. 141
-
-
Renaud, G.1
Stenzel, U.2
Kelso, J.3
-
85
-
-
79958093991
-
Extreme conservation leads to recovery of the Virunga mountain gorillas
-
Robbins MM, Gray M, Fawcett KA, et al. 2011. Extreme conservation leads to recovery of the Virunga mountain gorillas. PLoS ONE 6:e19788.
-
(2011)
PLoS ONE
, vol.6
, pp. e19788
-
-
Robbins, M.M.1
Gray, M.2
Fawcett, K.A.3
-
86
-
-
84876532090
-
IPD: the Immuno Polymorphism Database
-
Robinson J, Halliwell JA, McWilliam H, Lopez R, Marsh SG. 2013. IPD: the Immuno Polymorphism Database. Nucleic Acids Research 41:D1234-D1240.
-
(2013)
Nucleic Acids Research
, vol.41
, pp. D1234-D1240
-
-
Robinson, J.1
Halliwell, J.A.2
McWilliam, H.3
Lopez, R.4
Marsh, S.G.5
-
87
-
-
84860595791
-
Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture
-
Rohland N, Reich D. 2012. Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture. Genome Research 2:939-946.
-
(2012)
Genome Research
, vol.2
, pp. 939-946
-
-
Rohland, N.1
Reich, D.2
-
88
-
-
0028180280
-
Using mismatched primer-template pairs in touchdown PCR
-
Roux KH. 1994. Using mismatched primer-template pairs in touchdown PCR. Biotechniques 16:812-814.
-
(1994)
Biotechniques
, vol.16
, pp. 812-814
-
-
Roux, K.H.1
-
89
-
-
84908672742
-
Challenges in the use of genetic mark-recapture to estimate the population size of Bwindi mountain gorillas (Gorilla beringei beringei)
-
Roy J, Vigilant L, Gray M, et al. 2014a. Challenges in the use of genetic mark-recapture to estimate the population size of Bwindi mountain gorillas (Gorilla beringei beringei). Biological Conservation 180:249-261.
-
(2014)
Biological Conservation
, vol.180
, pp. 249-261
-
-
Roy, J.1
Vigilant, L.2
Gray, M.3
-
90
-
-
84920024755
-
Recent divergences and size decreases of eastern gorilla populations
-
Roy J, Arandjelovic M, Bradley BJ, et al. 2014b. Recent divergences and size decreases of eastern gorilla populations. Biology Letters 10:20140811.
-
(2014)
Biology Letters
, vol.10
, pp. 20140811
-
-
Roy, J.1
Arandjelovic, M.2
Bradley, B.J.3
-
91
-
-
84863230553
-
Insights into hominid evolution from the gorilla genome sequence
-
Scally A, Dutheil JY, Hillier LW, et al. 2012. Insights into hominid evolution from the gorilla genome sequence. Nature 483:169-175.
-
(2012)
Nature
, vol.483
, pp. 169-175
-
-
Scally, A.1
Dutheil, J.Y.2
Hillier, L.W.3
-
92
-
-
84878656540
-
A genome-wide survey of genetic variation in gorillas using reduced representation sequencing
-
Scally A, Yngvadottir B, Xue Y, et al. 2013. A genome-wide survey of genetic variation in gorillas using reduced representation sequencing. PLoS ONE 8:e65066.
-
(2013)
PLoS ONE
, vol.8
, pp. e65066
-
-
Scally, A.1
Yngvadottir, B.2
Xue, Y.3
-
93
-
-
79952422304
-
Quality control and preprocessing of metagenomic datasets
-
Schmieder R, Edwards R. 2011. Quality control and preprocessing of metagenomic datasets. Bioinformatics 27:863-864.
-
(2011)
Bioinformatics
, vol.27
, pp. 863-864
-
-
Schmieder, R.1
Edwards, R.2
-
94
-
-
0028095623
-
Current knowledge on the major histocompatibility complex class II region in non-human primates
-
Slierendregt BL, Bontrop RE. 1994. Current knowledge on the major histocompatibility complex class II region in non-human primates. European Journal of Immunogenetics 21:391-402.
-
(1994)
European Journal of Immunogenetics
, vol.21
, pp. 391-402
-
-
Slierendregt, B.L.1
Bontrop, R.E.2
-
95
-
-
77957882879
-
Reducing chimera formation during PCR amplification to ensure accurate genotyping
-
Smyth RP, Schlub TE, Grimm A, et al. 2010. Reducing chimera formation during PCR amplification to ensure accurate genotyping. Gene 469:45-51.
-
(2010)
Gene
, vol.469
, pp. 45-51
-
-
Smyth, R.P.1
Schlub, T.E.2
Grimm, A.3
-
96
-
-
27744606052
-
The importance of immune gene variability (MHC) in evolutionary ecology and conservation
-
Sommer S. 2005. The importance of immune gene variability (MHC) in evolutionary ecology and conservation. Frontiers in Zoology 2:16.
-
(2005)
Frontiers in Zoology
, vol.2
, pp. 16
-
-
Sommer, S.1
-
97
-
-
84881126426
-
MHC genotyping of non-model organisms using next-generation sequencing: a new methodology to deal with artefacts and allelic dropout
-
Sommer S, Courtiol A, Mazzoni CJ. 2013. MHC genotyping of non-model organisms using next-generation sequencing: a new methodology to deal with artefacts and allelic dropout. BMC Genomics 14:542.
-
(2013)
BMC Genomics
, vol.14
, pp. 542
-
-
Sommer, S.1
Courtiol, A.2
Mazzoni, C.J.3
-
98
-
-
79959281269
-
jMHC: software assistant for multilocus genotyping of gene families using next-generation amplicon sequencing
-
Stuglik MT, Radwan J, Babik W. 2011. jMHC: software assistant for multilocus genotyping of gene families using next-generation amplicon sequencing. Molecular Ecology Resources 11:739-742.
-
(2011)
Molecular Ecology Resources
, vol.11
, pp. 739-742
-
-
Stuglik, M.T.1
Radwan, J.2
Babik, W.3
-
99
-
-
84904556760
-
Stepwise threshold clustering: a new method for genotyping MHC loci using next-generation sequencing technology
-
Stutz WE, Bolnick DI. 2014. Stepwise threshold clustering: a new method for genotyping MHC loci using next-generation sequencing technology. PLoS ONE 9:e100587.
-
(2014)
PLoS ONE
, vol.9
, pp. e100587
-
-
Stutz, W.E.1
Bolnick, D.I.2
-
101
-
-
84890330527
-
MEGA6: molecular evolutionary genetics analysis version 6.0
-
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30:2725-2729.
-
(2013)
Molecular Biology and Evolution
, vol.30
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
-
102
-
-
33845899683
-
The complex evolutionary history of gorillas: insights from genomic data
-
Thalmann O, Fischer A, Lankester F, Pääbo S, Vigilant L. 2007. The complex evolutionary history of gorillas: insights from genomic data. Molecular Biology and Evolution 24:146-158.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 146-158
-
-
Thalmann, O.1
Fischer, A.2
Lankester, F.3
Pääbo, S.4
Vigilant, L.5
-
103
-
-
79953253308
-
Historical sampling reveals dramatic demographic changes in western gorilla populations
-
Thalmann O, Wegmann D, Spitzner M, et al. 2011. Historical sampling reveals dramatic demographic changes in western gorilla populations. BMC Evolutionary Biology 11:85.
-
(2011)
BMC Evolutionary Biology
, vol.11
, pp. 85
-
-
Thalmann, O.1
Wegmann, D.2
Spitzner, M.3
-
104
-
-
0036566806
-
Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'
-
Thompson JR, Marcelino LA, Polz MF. 2002. Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'. Nucleic Acids Research 30:2083-2088.
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 2083-2088
-
-
Thompson, J.R.1
Marcelino, L.A.2
Polz, M.F.3
-
105
-
-
0037431235
-
Catastrophic ape decline in western equatorial Africa
-
Walsh P, Abernathy K, Bermejo M, et al. 2003. Catastrophic ape decline in western equatorial Africa. Nature 422:611-614.
-
(2003)
Nature
, vol.422
, pp. 611-614
-
-
Walsh, P.1
Abernathy, K.2
Bermejo, M.3
-
106
-
-
0030937833
-
Capture and processing of exogenous antigens for presentation on MHC molecules
-
Watts C. 1997. Capture and processing of exogenous antigens for presentation on MHC molecules. Annual Review of Immunology 15:821-850.
-
(1997)
Annual Review of Immunology
, vol.15
, pp. 821-850
-
-
Watts, C.1
-
107
-
-
65549084203
-
Massive parallel MHC genotyping: titanium that shines
-
Wegner KM. 2009. Massive parallel MHC genotyping: titanium that shines. Molecular Ecology 18:1818-1820.
-
(2009)
Molecular Ecology
, vol.18
, pp. 1818-1820
-
-
Wegner, K.M.1
-
108
-
-
84927589000
-
Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding
-
Xue Y, Prado-Martinez J, Sudmant PH, et al. 2015. Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding. Science 348:242-245.
-
(2015)
Science
, vol.348
, pp. 242-245
-
-
Xue, Y.1
Prado-Martinez, J.2
Sudmant, P.H.3
-
109
-
-
78650653530
-
454 sequencing reveals extreme complexity of the class II major histocompatibility complex in the collared flycatcher
-
Zagalska-Neubauer M, Babik W, Stuglik M, et al. 2010. 454 sequencing reveals extreme complexity of the class II major histocompatibility complex in the collared flycatcher. BMC Evolutionary Biology 10:395.
-
(2010)
BMC Evolutionary Biology
, vol.10
, pp. 395
-
-
Zagalska-Neubauer, M.1
Babik, W.2
Stuglik, M.3
|