메뉴 건너뛰기




Volumn 42, Issue 18, 2014, Pages e141-

LeeHom: Adaptor trimming and merging for Illumina sequencing reads

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; BAYES THEOREM; COMPUTER PROGRAM; DNA SEQUENCE; PROCEDURES; STATISTICAL MODEL;

EID: 84922394220     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku699     Document Type: Article
Times cited : (164)

References (13)
  • 1
    • 84875500588 scopus 로고    scopus 로고
    • Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA
    • Gansauge, M.-T., Meyer, M. (2013) Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA. Nat. Protoc., 8, 737-748.
    • (2013) Nat. Protoc , vol.8 , pp. 737-748
    • Gansauge, M.-T.1    Meyer, M.2
  • 2
    • 84859112401 scopus 로고    scopus 로고
    • Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA
    • Sawyer, S., Krause, J., Guschanski, K., Savolainen, V., Paäbo, S. (2012) Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA. PLoS One, 7, e34131.
    • (2012) PLoS One , vol.7 , pp. e34131
    • Sawyer, S.1    Krause, J.2    Guschanski, K.3    Savolainen, V.4    Paäbo, S.5
  • 3
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Martin, M. (2011) Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet. J., 17, 10.
    • (2011) EMBnet. J , vol.17 , pp. 10
    • Martin, M.1
  • 4
    • 79960698975 scopus 로고    scopus 로고
    • Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies
    • Kong, Y. (2011) Btrim: a fast, lightweight adapter and quality trimming program for next-generation sequencing technologies. Genomics, 98, 152-153.
    • (2011) Genomics , vol.98 , pp. 152-153
    • Kong, Y.1
  • 5
    • 84856300587 scopus 로고    scopus 로고
    • Analysis of high-throughput ancient DNA sequencing data
    • Shapiro, B., Hofreiter, M. (eds Springer, Humana Press
    • Kircher, M. (2012) Analysis of high-throughput ancient DNA sequencing data. In: Shapiro, B., Hofreiter, M. (eds). Ancient DNA: methods and protocols. Springer, Humana Press . pp. 197-228.
    • (2012) Ancient DNA: Methods and Protocols , pp. 197-228
    • Kircher, M.1
  • 6
    • 84863101693 scopus 로고    scopus 로고
    • AdapterRemoval: Easy cleaning of next-generation sequencing reads
    • Lindgreen, S. (2012) AdapterRemoval: easy cleaning of next-generation sequencing reads. BMC Res. Notes, 5, 337-343.
    • (2012) BMC Res. Notes , vol.5 , pp. 337-343
    • Lindgreen, S.1
  • 8
    • 84897676120 scopus 로고    scopus 로고
    • PEAR: A fast and accurate Illumina Paired-End reAd mergeR
    • Zhang, J., Kobert, K., Flouri, T., Stamatakis, A. (2013) PEAR: a fast and accurate Illumina Paired-End reAd mergeR. Bioinformatics, 30, 614-620.
    • (2013) Bioinformatics , vol.30 , pp. 614-620
    • Zhang, J.1    Kobert, K.2    Flouri, T.3    Stamatakis, A.4
  • 9
    • 84869401941 scopus 로고    scopus 로고
    • COPE: An accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
    • Liu, B., Yuan, J., Yiu, S.-M., Li, Z., Xie, Y., Chen, Y., Shi, Y., Zhang, H., Li, Y., Lam, T.-W. et al. (2012) COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly. Bioinformatics, 28, 2870-2874.
    • (2012) Bioinformatics , vol.28 , pp. 2870-2874
    • Liu, B.1    Yuan, J.2    Yiu, S.-M.3    Li, Z.4    Xie, Y.5    Chen, Y.6    Shi, Y.7    Zhang, H.8    Li, Y.9    Lam, T.-W.10
  • 10
    • 84892365780 scopus 로고    scopus 로고
    • The complete genome sequence of a Neanderthal from the Altai Mountains
    • Pr ufer, K., Racimo, F., Patterson, N., Jay, F., Sankararaman, S., Sawyer, S., Heinze, A., Renaud, G., Sudmant, P.H., de Filippo, C. et al. (2014) The complete genome sequence of a Neanderthal from the Altai Mountains. Nature, 505, 43-49.
    • (2014) Nature , vol.505 , pp. 43-49
    • Prüfer, K.1
  • 11
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H., Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.