-
1
-
-
84875500588
-
Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA
-
Gansauge, M.-T., Meyer, M. (2013) Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA. Nat. Protoc., 8, 737-748.
-
(2013)
Nat. Protoc
, vol.8
, pp. 737-748
-
-
Gansauge, M.-T.1
Meyer, M.2
-
2
-
-
84859112401
-
Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA
-
Sawyer, S., Krause, J., Guschanski, K., Savolainen, V., Paäbo, S. (2012) Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA. PLoS One, 7, e34131.
-
(2012)
PLoS One
, vol.7
, pp. e34131
-
-
Sawyer, S.1
Krause, J.2
Guschanski, K.3
Savolainen, V.4
Paäbo, S.5
-
3
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin, M. (2011) Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet. J., 17, 10.
-
(2011)
EMBnet. J
, vol.17
, pp. 10
-
-
Martin, M.1
-
4
-
-
79960698975
-
Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies
-
Kong, Y. (2011) Btrim: a fast, lightweight adapter and quality trimming program for next-generation sequencing technologies. Genomics, 98, 152-153.
-
(2011)
Genomics
, vol.98
, pp. 152-153
-
-
Kong, Y.1
-
5
-
-
84856300587
-
Analysis of high-throughput ancient DNA sequencing data
-
Shapiro, B., Hofreiter, M. (eds Springer, Humana Press
-
Kircher, M. (2012) Analysis of high-throughput ancient DNA sequencing data. In: Shapiro, B., Hofreiter, M. (eds). Ancient DNA: methods and protocols. Springer, Humana Press . pp. 197-228.
-
(2012)
Ancient DNA: Methods and Protocols
, pp. 197-228
-
-
Kircher, M.1
-
6
-
-
84863101693
-
AdapterRemoval: Easy cleaning of next-generation sequencing reads
-
Lindgreen, S. (2012) AdapterRemoval: easy cleaning of next-generation sequencing reads. BMC Res. Notes, 5, 337-343.
-
(2012)
BMC Res. Notes
, vol.5
, pp. 337-343
-
-
Lindgreen, S.1
-
7
-
-
84857011001
-
PANDAseq: Paired-end assembler for Illumina sequences
-
Masella, A.P., Bartram, A.K., Truszkowski, J.M., Brown, D.G., Neufeld, J.D. (2012) PANDAseq: paired-end assembler for Illumina sequences. BMC Bioinformat., 13, 31-37.
-
(2012)
BMC Bioinformat
, vol.13
, pp. 31-37
-
-
Masella, A.P.1
Bartram, A.K.2
Truszkowski, J.M.3
Brown, D.G.4
Neufeld, J.D.5
-
8
-
-
84897676120
-
PEAR: A fast and accurate Illumina Paired-End reAd mergeR
-
Zhang, J., Kobert, K., Flouri, T., Stamatakis, A. (2013) PEAR: a fast and accurate Illumina Paired-End reAd mergeR. Bioinformatics, 30, 614-620.
-
(2013)
Bioinformatics
, vol.30
, pp. 614-620
-
-
Zhang, J.1
Kobert, K.2
Flouri, T.3
Stamatakis, A.4
-
9
-
-
84869401941
-
COPE: An accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
-
Liu, B., Yuan, J., Yiu, S.-M., Li, Z., Xie, Y., Chen, Y., Shi, Y., Zhang, H., Li, Y., Lam, T.-W. et al. (2012) COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly. Bioinformatics, 28, 2870-2874.
-
(2012)
Bioinformatics
, vol.28
, pp. 2870-2874
-
-
Liu, B.1
Yuan, J.2
Yiu, S.-M.3
Li, Z.4
Xie, Y.5
Chen, Y.6
Shi, Y.7
Zhang, H.8
Li, Y.9
Lam, T.-W.10
-
10
-
-
84892365780
-
The complete genome sequence of a Neanderthal from the Altai Mountains
-
Pr ufer, K., Racimo, F., Patterson, N., Jay, F., Sankararaman, S., Sawyer, S., Heinze, A., Renaud, G., Sudmant, P.H., de Filippo, C. et al. (2014) The complete genome sequence of a Neanderthal from the Altai Mountains. Nature, 505, 43-49.
-
(2014)
Nature
, vol.505
, pp. 43-49
-
-
Prüfer, K.1
-
11
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H., Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
12
-
-
84867331947
-
A high-coverage genome sequence from an archaic Denisovan individual
-
Meyer, M., Kircher, M., Gansauge, M.-T., Li, H., Racimo, F., Mallick, S., Schraiber, J.G., Jay, F., Pr ufer, K., de Filippo, C. et al. (2012) A high-coverage genome sequence from an archaic Denisovan individual. Science, 338, 222-226.
-
(2012)
Science
, vol.338
, pp. 222-226
-
-
Meyer, M.1
Kircher, M.2
Gansauge, M.-T.3
Li, H.4
Racimo, F.5
Mallick, S.6
Schraiber, J.G.7
Jay, F.8
Prüfer, K.9
De Filippo, C.10
-
13
-
-
80052226692
-
Sequence-specific error profile of Illumina sequencers
-
Nakamura, K., Oshima, T., Morimoto, T., Ikeda, S., Yoshikawa, H., Shiwa, Y., Ishikawa, S., Linak, M.C., Hirai, A., Takahashi, H. et al. (2011) Sequence-specific error profile of Illumina sequencers. Nucleic Acids Res., 39, e90.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. e90
-
-
Nakamura, K.1
Oshima, T.2
Morimoto, T.3
Ikeda, S.4
Yoshikawa, H.5
Shiwa, Y.6
Ishikawa, S.7
Linak, M.C.8
Hirai, A.9
Takahashi, H.10
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