-
1
-
-
57649089378
-
The CACTA transposon Bot1 played a major role in Brassica genome divergence and gene proliferation
-
Alix, K., Joets, J., Ryder, C. D., Moore, J., Barker, G. C., Bailey, J. P., et al. (2008). The CACTA transposon Bot1 played a major role in Brassica genome divergence and gene proliferation. Plant J. 56, 1030-1044. doi: 10.1111/j.1365-313X.2008.03660.x
-
(2008)
Plant J.
, vol.56
, pp. 1030-1044
-
-
Alix, K.1
Joets, J.2
Ryder, C.D.3
Moore, J.4
Barker, G.C.5
Bailey, J.P.6
-
2
-
-
18044393885
-
RNA silencing and genome regulation
-
Almeida, R., and Allshire, R. C. (2005). RNA silencing and genome regulation. Trends Cell Biol. 15, 251-258. doi: 10.1016/j.tcb.2005.03.006
-
(2005)
Trends Cell Biol.
, vol.15
, pp. 251-258
-
-
Almeida, R.1
Allshire, R.C.2
-
3
-
-
33847794180
-
Quantification of the tissue-culture induced variation in barley (Hordeum vulgare L.)
-
Bednarek, P. T., Orłowska, R., Koebner, R. M., and Zimny, J. (2007). Quantification of the tissue-culture induced variation in barley (Hordeum vulgare L.). BMC Plant Biol. 7:10. doi: 10.1186/1471-2229-7-10
-
(2007)
BMC Plant Biol
, vol.7
, pp. 10
-
-
Bednarek, P.T.1
Orłowska, R.2
Koebner, R.M.3
Zimny, J.4
-
4
-
-
0033555906
-
Tandem repeats finder: A program to analyze DNA sequences
-
Benson, G. (1999). Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27, 573-580. doi: 10.1093/nar/27.2.573
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 573-580
-
-
Benson, G.1
-
5
-
-
0036144048
-
DNA methylation patterns and epigenetic memory
-
Bird, A. (2002). DNA methylation patterns and epigenetic memory. Genes Dev. 16, 6-21. doi: 10.1101/gad.947102
-
(2002)
Genes Dev.
, vol.16
, pp. 6-21
-
-
Bird, A.1
-
6
-
-
84906689347
-
Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome
-
Chalhoub, B., Denoeud, F., Liu, S., Parkin, I. A. P., Tang, H., Wang, X., et al. (2014). Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science 345, 950-953. doi: 10.1126/science.1253435
-
(2014)
Science
, vol.345
, pp. 950-953
-
-
Chalhoub, B.1
Denoeud, F.2
Liu, S.3
Parkin, I.A.P.4
Tang, H.5
Wang, X.6
-
7
-
-
17744364327
-
Gardening the genome: DNA methylation in Arabidopsis thaliana
-
Chan, S. W., Henderson, I. R., and Jacobsen, S. E. (2005). Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat. Rev. Genet. 6, 351-360. doi: 10.1038/nrg1601
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 351-360
-
-
Chan, S.W.1
Henderson, I.R.2
Jacobsen, S.E.3
-
8
-
-
84878008437
-
Detection and genotyping of restriction fragment associated polymorphisms in polyploid crops with a pseudo-reference sequence: A case study in allotetraploid Brassica napus
-
Chen, X., Li, X., Zhang, B., Xu, J., Wu, Z., Wang, B., et al. (2013). Detection and genotyping of restriction fragment associated polymorphisms in polyploid crops with a pseudo-reference sequence: a case study in allotetraploid Brassica napus. BMC Genomics 14:346. doi: 10.1186/1471-2164-14-346
-
(2013)
BMC Genomics
, vol.14
, pp. 346
-
-
Chen, X.1
Li, X.2
Zhang, B.3
Xu, J.4
Wu, Z.5
Wang, B.6
-
9
-
-
84879482267
-
Deciphering the diploid ancestral genome of the mesohexaploid Brassica rapa
-
Cheng, F., Mandáková, T., Wu, J., Xie, Q., Lysak, M. A., and Wang, X. (2013). Deciphering the diploid ancestral genome of the mesohexaploid Brassica rapa. Plant Cell 25, 1541-1554. doi: 10.1105/tpc.113.110486
-
(2013)
Plant Cell
, vol.25
, pp. 1541-1554
-
-
Cheng, F.1
Mandáková, T.2
Wu, J.3
Xie, Q.4
Lysak, M.A.5
Wang, X.6
-
10
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus, S. J., Feng, S., Zhang, X., Chen, Z., Merriman, B., Haudenschild, C. D., et al. (2008). Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 452, 215-219. doi: 10.1038/nature06745
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
Chen, Z.4
Merriman, B.5
Haudenschild, C.D.6
-
11
-
-
84863868772
-
Cytoplasmic and genomic effects on meiotic pairing in Brassica hybrids and allotetraploids from pair crosses of three cultivated diploids
-
Cui, C., Ge, X., Gautam, M., Kang, L., and Li, Z. (2012). Cytoplasmic and genomic effects on meiotic pairing in Brassica hybrids and allotetraploids from pair crosses of three cultivated diploids. Genetics 191, 725-738. doi: 10.1534/genetics.112.140780
-
(2012)
Genetics
, vol.191
, pp. 725-738
-
-
Cui, C.1
Ge, X.2
Gautam, M.3
Kang, L.4
Li, Z.5
-
12
-
-
84878572090
-
Cytoplasmic and genomic effects on non-meiosis-driven genetic changes in Brassica hybrids and allotetraploids from pairwise crosses of three cultivated diploids
-
Cui, C., Ge, X., Zhou, Y., Li, M., and Li, Z. (2013). Cytoplasmic and genomic effects on non-meiosis-driven genetic changes in Brassica hybrids and allotetraploids from pairwise crosses of three cultivated diploids. PLoS ONE 8:e65078. doi: 10.1371/journal.pone.0065078
-
(2013)
PLoS ONE
, vol.8
-
-
Cui, C.1
Ge, X.2
Zhou, Y.3
Li, M.4
Li, Z.5
-
13
-
-
84893415366
-
Epigenetics and plant genome evolution
-
Diez, C. M., Roessler, K., and Gaut, B. S. (2014). Epigenetics and plant genome evolution. Curr. Opin. Plant Biol. 18, 1-8. doi: 10.1016/j.pbi.2013.11.017
-
(2014)
Curr. Opin. Plant Biol.
, vol.18
, pp. 1-8
-
-
Diez, C.M.1
Roessler, K.2
Gaut, B.S.3
-
14
-
-
77952734605
-
Conservation and divergence of methylation patterning in plants and animals
-
Feng, S., Cokus, S. J., Zhang, X., Chen, P. Y., Bostick, M., Goll, M. G., et al. (2010). Conservation and divergence of methylation patterning in plants and animals. Proc. Natl. Acad. Sci. U.S.A. 107, 8689-8694. doi: 10.1073/pnas.1002720107
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 8689-8694
-
-
Feng, S.1
Cokus, S.J.2
Zhang, X.3
Chen, P.Y.4
Bostick, M.5
Goll, M.G.6
-
15
-
-
37849034684
-
Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype
-
Gaeta, R. T., Pires, J. C., Iniguez-Luy, F., Leon, E., and Osborn, T. C. (2007). Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype. Plant Cell 19, 3403-3417. doi: 10.1105/tpc.107.054346
-
(2007)
Plant Cell
, vol.19
, pp. 3403-3417
-
-
Gaeta, R.T.1
Pires, J.C.2
Iniguez-Luy, F.3
Leon, E.4
Osborn, T.C.5
-
16
-
-
84878925197
-
Analysis of genomic DNA methylation patterns in regenerated and control plants of rye (Secale cereale L.)
-
Gonzalez, A., Saiz, A., Acedo, A., Ruiz, M., and Polanco, C. (2013). Analysis of genomic DNA methylation patterns in regenerated and control plants of rye (Secale cereale L.). Plant Growth Regul. 70, 227-236. doi: 10.1007/s10725-013-9794-7
-
(2013)
Plant Growth Regul.
, vol.70
, pp. 227-236
-
-
Gonzalez, A.1
Saiz, A.2
Acedo, A.3
Ruiz, M.4
Polanco, C.5
-
17
-
-
79952788617
-
Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling
-
Gu, H., Smith, Z. D., Bock, C., Boyle, P., Gnirke, A., and Meissner, A. (2011). Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling. Nat. Protoc. 6, 468-481. doi: 10.1038/nprot.2010.190
-
(2011)
Nat. Protoc.
, vol.6
, pp. 468-481
-
-
Gu, H.1
Smith, Z.D.2
Bock, C.3
Boyle, P.4
Gnirke, A.5
Meissner, A.6
-
18
-
-
59149106776
-
Limited tissue culture−induced mutations and linked epigenetic modifications in F1 hybrids of sorghum pure lines are accompanied by increased transcription of DNA methyltransferases and 5-methylcytosine glycosylases
-
Hang, M., Xu, C., Yan, H., Zhao, N., Von Wettstein, D., and Liu, B. (2009). Limited tissue culture−induced mutations and linked epigenetic modifications in F1 hybrids of sorghum pure lines are accompanied by increased transcription of DNA methyltransferases and 5-methylcytosine glycosylases. Plant J. 57, 666-679. doi: 10.1111/j.1365-313X.2008.03719.x
-
(2009)
Plant J.
, vol.57
, pp. 666-679
-
-
Hang, M.1
Xu, C.2
Yan, H.3
Zhao, N.4
Von Wettstein, D.5
Liu, B.6
-
19
-
-
79952535972
-
Regulation and function of DNA methylation in plants and animals
-
He, X. J., Chen, T., and Zhu, J. K. (2011). Regulation and function of DNA methylation in plants and animals. Cell Res. 21, 442-465. doi: 10.1038/cr.2011.23
-
(2011)
Cell Res.
, vol.21
, pp. 442-465
-
-
He, X.J.1
Chen, T.2
Zhu, J.K.3
-
20
-
-
34249330696
-
Epigenetic inheritance in plants
-
Henderson, I. R., and Jacobsen, S. E. (2007). Epigenetic inheritance in plants. Nature 447, 418-424. doi: 10.1038/nature05917
-
(2007)
Nature
, vol.447
, pp. 418-424
-
-
Henderson, I.R.1
Jacobsen, S.E.2
-
21
-
-
68149144366
-
Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
-
Hollister, J. D., and Gaut, B. S. (2009). Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression. Genome Res. 19, 1419-1428. doi: 10.1101/gr.091678.109
-
(2009)
Genome Res.
, vol.19
, pp. 1419-1428
-
-
Hollister, J.D.1
Gaut, B.S.2
-
22
-
-
79955630390
-
Ancestral polyploidy in seed plants and angiosperms
-
Jiao, Y., Wickett, N. J., Ayyampalayam, S., Chanderbali, A. S., Landherr, L., Ralph, P. E., et al. (2011). Ancestral polyploidy in seed plants and angiosperms. Nature 473, 97-100. doi: 10.1038/nature09916
-
(2011)
Nature
, vol.473
, pp. 97-100
-
-
Jiao, Y.1
Wickett, N.J.2
Ayyampalayam, S.3
Chanderbali, A.S.4
Landherr, L.5
Ralph, P.E.6
-
23
-
-
0027430010
-
Tissue culture-induced DNA methylation variation in maize
-
Kaeppler, S. M., and Phillips, R. L. (1993). Tissue culture-induced DNA methylation variation in maize. Proc. Natl. Acad. Sci. U.S.A. 90, 8773-8776. doi: 10.1073/pnas.90.19.8773
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 8773-8776
-
-
Kaeppler, S.M.1
Phillips, R.L.2
-
24
-
-
79957868920
-
Bismark: A flexible aligner and methylation caller for Bisulfite-Seq applications
-
Krueger, F., and Andrews, S. R. (2011). Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics 27, 1571-1572. doi: 10.1093/bioinformatics/btr167
-
(2011)
Bioinformatics
, vol.27
, pp. 1571-1572
-
-
Krueger, F.1
Andrews, S.R.2
-
25
-
-
1542338594
-
Genomic duplication, fractionation and the origin of regulatory novelty
-
Langham, R. J., Walsh, J., Dunn, M., Ko, C., Goff, S. A., and Freeling, M. (2004). Genomic duplication, fractionation and the origin of regulatory novelty. Genetics 166, 935-945. doi: 10.1534/genetics.166.2.935
-
(2004)
Genetics
, vol.166
, pp. 935-945
-
-
Langham, R.J.1
Walsh, J.2
Dunn, M.3
Ko, C.4
Goff, S.A.5
Freeling, M.6
-
26
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B., and Salzberg, S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nat. Meth. 9, 357-359. doi: 10.1038/nmeth.1923
-
(2012)
Nat. Meth.
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
27
-
-
77649267695
-
Dynamic changes in the human methylome during differentiation
-
Laurent, L., Wong, E., Li, G., Huynh, T., Tsirigos, A., Ong, C. T., et al. (2010). Dynamic changes in the human methylome during differentiation. Genome Res. 20, 320-331. doi: 10.1101/gr.101907.109
-
(2010)
Genome Res.
, vol.20
, pp. 320-331
-
-
Laurent, L.1
Wong, E.2
Li, G.3
Huynh, T.4
Tsirigos, A.5
Ong, C.T.6
-
28
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law, J. A., and Jacobsen, S. E. (2010). Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet. 11, 204-220. doi: 10.1038/nrg2719
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
29
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., et al. (2009). The sequence alignment/map format and SAMtools. Bioinformatics 25, 2078-2079. doi: 10.1093/bioinformatics/btp352
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
-
30
-
-
84863103782
-
Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression
-
Li, X., Zhu, J., Hu, F., Ge, S., Ye, M., Xiang, H., et al. (2012). Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression. BMC Genomics 13:300. doi: 10.1186/1471-2164-13-300
-
(2012)
BMC Genomics
, vol.13
, pp. 300
-
-
Li, X.1
Zhu, J.2
Hu, F.3
Ge, S.4
Ye, M.5
Xiang, H.6
-
31
-
-
81255149229
-
Genetic and epigenetic relationship in rye, Secale cereale L., somaclonal variation within somatic embryo-derived plants
-
Linacero, R., Rueda, J., Esquivel, E., Bellido, A., Domingo, A., and Vázquez, A. M. (2011). Genetic and epigenetic relationship in rye, Secale cereale L., somaclonal variation within somatic embryo-derived plants. In Vitro Cell Dev. Plant 47, 618-628. doi: 10.1007/s11627-011-9407-y
-
(2011)
In Vitro Cell Dev. Plant
, vol.47
, pp. 618-628
-
-
Linacero, R.1
Rueda, J.2
Esquivel, E.3
Bellido, A.4
Domingo, A.5
Vázquez, A.M.6
-
32
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
Lister, R., O’Malley, R. C., Tonti-Filippini, J., Gregory, B. D., Berry, C. C., Millar, A. H., et al. (2008). Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 133, 523-536. doi: 10.1016/j.cell.2008.03.029
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
O’Malley, R.C.2
Tonti-Filippini, J.3
Gregory, B.D.4
Berry, C.C.5
Millar, A.H.6
-
33
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
Lister, R., Pelizzola, M., Dowen, R. H., Hawkins, R. D., Hon, G., Tonti-Filippini, J., et al. (2009). Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462, 315-322. doi: 10.1038/nature08514
-
(2009)
Nature
, vol.462
, pp. 315-322
-
-
Lister, R.1
Pelizzola, M.2
Dowen, R.H.3
Hawkins, R.D.4
Hon, G.5
Tonti-Filippini, J.6
-
34
-
-
84901467202
-
The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes
-
Liu, S., Liu, Y., Yang, X., Tong, C., Edwards, D., Parkin, I. A., et al. (2014). The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes. Nat. Commun. 5, 3930. doi: 10.1038/ncomms4930
-
(2014)
Nat. Commun.
, vol.5
, pp. 3930
-
-
Liu, S.1
Liu, Y.2
Yang, X.3
Tong, C.4
Edwards, D.5
Parkin, I.A.6
-
35
-
-
81255209600
-
Epigenetic QTL mapping in Brassica napus
-
Long, Y., Xia, W., Li, R., Wang, J., Shao, M., Feng, J., et al. (2011). Epigenetic QTL mapping in Brassica napus. Genetics 189, 1093-1102. doi: 10.1534/genetics.111.131615
-
(2011)
Genetics
, vol.189
, pp. 1093-1102
-
-
Long, Y.1
Xia, W.2
Li, R.3
Wang, J.4
Shao, M.5
Feng, J.6
-
36
-
-
33645832572
-
Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids
-
Lukens, L. N., Pires, J. C., Leon, E., Vogelzang, R., Oslach, L., and Osborn, T. (2006). Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids. Plant Physiol. 140, 336-348. doi: 10.1104/pp.105.066308
-
(2006)
Plant Physiol.
, vol.140
, pp. 336-348
-
-
Lukens, L.N.1
Pires, J.C.2
Leon, E.3
Vogelzang, R.4
Oslach, L.5
Osborn, T.6
-
37
-
-
84905978616
-
Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea
-
Parkin, I. A., Koh, C., Tang, H., Robinson, S. J., Kagale, S., Clarke, W. E., et al. (2014). Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea. Genome Biol. 15:R77. doi: 10.1186/gb-2014-15-6-r77
-
(2014)
Genome Biol
, vol.15
-
-
Parkin, I.A.1
Koh, C.2
Tang, H.3
Robinson, S.J.4
Kagale, S.5
Clarke, W.E.6
-
38
-
-
84856468953
-
NGS QC Toolkit: A toolkit for quality control of next generation sequencing data
-
Patel, R. K., and Jain, M. (2012). NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PLoS ONE 7:e30619. doi: 10.1371/journal.pone.0030619
-
(2012)
PLoS ONE
, vol.7
-
-
Patel, R.K.1
Jain, M.2
-
39
-
-
84948738085
-
Brassicaand its close allies: Cytogenetics and evolution
-
Prakash, S., Bhat, S. R., Quiros, C. F., Kirti, P. B., and Chopra, V. L. (2009). Brassicaand its close allies: cytogenetics and evolution. Plant Breed. Rev. 31, 21. doi: 10.1002/9780470593783.ch2
-
(2009)
Plant Breed. Rev.
, vol.31
, pp. 21
-
-
Prakash, S.1
Bhat, S.R.2
Quiros, C.F.3
Kirti, P.B.4
Chopra, V.L.5
-
40
-
-
79953254847
-
Journey through the past: 150 million years of plant genome evolution
-
Proost, S., Pattyn, P., Gerats, T., and Van de Peer, Y. (2011). Journey through the past: 150 million years of plant genome evolution. Plant J. 66, 58-65. doi: 10.1111/j.1365-313X.2011.04521.x
-
(2011)
Plant J.
, vol.66
, pp. 58-65
-
-
Proost, S.1
Pattyn, P.2
Gerats, T.3
Van de Peer, Y.4
-
41
-
-
77952302158
-
The collapse of gene complement following whole genome duplication
-
Sankoff, D., Zheng, C., and Zhu, Q. (2010). The collapse of gene complement following whole genome duplication. BMC Genomics 11:313. doi: 10.1186/1471-2164-11-313
-
(2010)
BMC Genomics
, vol.11
, pp. 313
-
-
Sankoff, D.1
Zheng, C.2
Zhu, Q.3
-
42
-
-
79952495788
-
Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize
-
Schnable, J. C., and Freeling, M. (2011). Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize. PLoS ONE 6:e17855. doi: 10.1371/journal.pone.0017855
-
(2011)
PLoS ONE
, vol.6
-
-
Schnable, J.C.1
Freeling, M.2
-
43
-
-
79952744855
-
Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
-
Schnable, J. C., Springer, N. M., and Freeling, M. (2011). Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proc. Natl. Acad. Sci. U.S.A. 108, 4069-4074. doi: 10.1073/pnas.1101368108
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 4069-4074
-
-
Schnable, J.C.1
Springer, N.M.2
Freeling, M.3
-
44
-
-
0033198094
-
Polyploidy: Recurrent formation and genome evolution
-
Soltis, D. E., and Soltis, P. S. (1999). Polyploidy: recurrent formation and genome evolution. Trends Ecol. Evol. 14, 348-352.
-
(1999)
Trends Ecol. Evol.
, vol.14
, pp. 348-352
-
-
Soltis, D.E.1
Soltis, P.S.2
-
45
-
-
84891928839
-
Genome-wide analysis of DNA methylation in soybean
-
Song, Q. X., Lu, X., Li, Q. T., Chen, H., Hu, X. Y., Ma, B., et al. (2013). Genome-wide analysis of DNA methylation in soybean. Mol. Plant. 6, 1961-1974. doi: 10.1093/mp/sst123
-
(2013)
Mol. Plant.
, vol.6
, pp. 1961-1974
-
-
Song, Q.X.1
Lu, X.2
Li, Q.T.3
Chen, H.4
Hu, X.Y.5
Ma, B.6
-
46
-
-
84908005761
-
Consistent and heritable alterations of DNA methylation are induced by tissue culture in maize
-
Stelpflug, S. C., Eichten, S. R., Hermanson, P. J., Springer, N. M., and Kaeppler, S. M. (2014). Consistent and heritable alterations of DNA methylation are induced by tissue culture in maize. Genetics 198, 209-218. doi: 10.1534/genetics.114.165480
-
(2014)
Genetics
, vol.198
, pp. 209-218
-
-
Stelpflug, S.C.1
Eichten, S.R.2
Hermanson, P.J.3
Springer, N.M.4
Kaeppler, S.M.5
-
47
-
-
84879056945
-
Plants regenerated from tissue culture contain stable epigenome changes in rice
-
Stroud, H., Ding, B., Simon, S. A., Feng, S., Bellizzi, M., Pellegrini, M., et al. (2013). Plants regenerated from tissue culture contain stable epigenome changes in rice. Elife 2:e00354. doi: 10.7554/elife.00354
-
(2013)
Elife
, vol.2
-
-
Stroud, H.1
Ding, B.2
Simon, S.A.3
Feng, S.4
Bellizzi, M.5
Pellegrini, M.6
-
48
-
-
77950950181
-
The first meiosis of resynthesized Brassica napus, a genome blender
-
Szadkowski, E., Eber, F., Huteau, V., Lodé, M., Huneau, C., Belcram, H., et al. (2010). The first meiosis of resynthesized Brassica napus, a genome blender. New Phytol. 186, 102-112. doi: 10.1111/j.1469-8137.2010.03182.x
-
(2010)
New Phytol.
, vol.186
, pp. 102-112
-
-
Szadkowski, E.1
Eber, F.2
Huteau, V.3
Lodé, M.4
Huneau, C.5
Belcram, H.6
-
49
-
-
84859564587
-
Altered patterns of fractionation and exon deletions in Brassica rapasupport a two-step model of paleohexaploidy
-
Tang, H., Woodhouse, M. R., Cheng, F., Schnable, J. C., Pedersen, B. S., Conant, G., et al. (2012). Altered patterns of fractionation and exon deletions in Brassica rapasupport a two-step model of paleohexaploidy. Genetics 190, 1563-1574. doi: 10.1534/genetics.111.137349
-
(2012)
Genetics
, vol.190
, pp. 1563-1574
-
-
Tang, H.1
Woodhouse, M.R.2
Cheng, F.3
Schnable, J.C.4
Pedersen, B.S.5
Conant, G.6
-
50
-
-
84891713248
-
Epigenomic consequences of immortalized plant cell suspension culture
-
Tanurdzic, M., Vaughn, M. W., Jiang, H., Lee, T. J., Slotkin, R. K., Sosinski, B., et al. (2008). Epigenomic consequences of immortalized plant cell suspension culture. PLoS Biol. 6:e302. doi: 10.1371/journal.pbio.0060302
-
(2008)
PLoS Biol
, vol.6
-
-
Tanurdzic, M.1
Vaughn, M.W.2
Jiang, H.3
Lee, T.J.4
Slotkin, R.K.5
Sosinski, B.6
-
51
-
-
33745617700
-
Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes
-
Thomas, B. C., Pedersen, B., and Freeling, M. (2006). Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes. Genome Res. 16, 934-946. doi: 10.1101/gr.4708406
-
(2006)
Genome Res.
, vol.16
, pp. 934-946
-
-
Thomas, B.C.1
Pedersen, B.2
Freeling, M.3
-
52
-
-
84885337067
-
Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa
-
Tong, C., Wang, X., Yu, J., Wu, J., Li, W., Huang, J., et al. (2013). Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa. BMC Genomics 14:689. doi: 10.1186/1471-2164-14-689
-
(2013)
BMC Genomics
, vol.14
, pp. 689
-
-
Tong, C.1
Wang, X.2
Yu, J.3
Wu, J.4
Li, W.5
Huang, J.6
-
53
-
-
80053386792
-
The genome of the mesopolyploid crop species Brassica rapa
-
Wang, X., Wang, H., Wang, J., Sun, R., Wu, J., Liu, S., et al. (2011). The genome of the mesopolyploid crop species Brassica rapa. Nat. Genet. 43:1035-1039. doi: 10.1038/ng.919
-
(2011)
Nat. Genet
, vol.43
, pp. 1035-1039
-
-
Wang, X.1
Wang, H.2
Wang, J.3
Sun, R.4
Wu, J.5
Liu, S.6
-
54
-
-
6344289639
-
Inverted repeat structure of the human genome: The X-chromosome contains a preponderance of large, highly homologous inverted repeats that contain testes genes
-
Warburton, P. E., Giordano, J., Cheung, F., Gelfand, Y., and Benson, G. (2004). Inverted repeat structure of the human genome: the X-chromosome contains a preponderance of large, highly homologous inverted repeats that contain testes genes. Genome Res. 14, 1861-1869 doi: 10.1101/gr.2542904
-
(2004)
Genome Res.
, vol.14
, pp. 1861-1869
-
-
Warburton, P.E.1
Giordano, J.2
Cheung, F.3
Gelfand, Y.4
Benson, G.5
-
55
-
-
0035344021
-
Yesterday’s polyploids and the mystery of diploidization
-
Wolfe, K. H. (2001). Yesterday’s polyploids and the mystery of diploidization. Nat. Rev. Genet. 2, 333-341. doi: 10.1038/35072009
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 333-341
-
-
Wolfe, K.H.1
-
56
-
-
84898052115
-
Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids
-
Woodhouse, M. R., Cheng, F., Pires, J. C., Lisch, D., Freeling, M., and Wang, X. (2014). Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids. Proc. Natl. Acad. Sci. U.S.A. 111, 5283-5288. doi: 10.1073/pnas.1402475111
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 5283-5288
-
-
Woodhouse, M.R.1
Cheng, F.2
Pires, J.C.3
Lisch, D.4
Freeling, M.5
Wang, X.6
-
57
-
-
77954741256
-
Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homeologs
-
Woodhouse, M. R., Schnable, J. C., Pedersen, B. S., Lyons, E., Lisch, D., Subramaniam, S., et al. (2010). Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homeologs. PLoS Biol. 8:e1000409. doi: 10.1371/journal.pbio.1000409
-
(2010)
PLoS Biol
, vol.8
-
-
Woodhouse, M.R.1
Schnable, J.C.2
Pedersen, B.S.3
Lyons, E.4
Lisch, D.5
Subramaniam, S.6
-
58
-
-
33845880624
-
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
-
Zilberman, D., Gehring, M., Tran, R. K., Ballinger, T., and Henikoff, S. (2007). Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat. Genet. 39, 61-69. doi: 10.1038/ng1929
-
(2007)
Nat. Genet.
, vol.39
, pp. 61-69
-
-
Zilberman, D.1
Gehring, M.2
Tran, R.K.3
Ballinger, T.4
Henikoff, S.5
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