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Volumn 5, Issue , 2015, Pages

Optimized tuning of TALEN specificity using non-conventional RVDs

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYRIBONUCLEASE; HEMOGLOBIN;

EID: 84943586413     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep08150     Document Type: Article
Times cited : (35)

References (38)
  • 1
    • 84888107953 scopus 로고    scopus 로고
    • Genome engineering with TALeffector nucleases and alternative modular nuclease technologies
    • Scharenberg, A. M., Duchateau, P., Smith, J. Genome engineering with TALeffector nucleases and alternative modular nuclease technologies. Curr Gene Ther 13, 291-303 (2013).
    • (2013) Curr Gene Ther , vol.13 , pp. 291-303
    • Scharenberg, A.M.1    Duchateau, P.2    Smith, J.3
  • 2
    • 84904419786 scopus 로고    scopus 로고
    • Activating human genes with zinc finger proteins, transcription activator-like effectors and CRISPR/Cas9 for gene therapy and regenerative medicine
    • Gersbach, C. A., Perez-Pinera, P. Activating human genes with zinc finger proteins, transcription activator-like effectors and CRISPR/Cas9 for gene therapy and regenerative medicine. Expert Opin Ther Targets 18, 835-839 (2014).
    • (2014) Expert Opin Ther Targets , vol.18 , pp. 835-839
    • Gersbach, C.A.1    Perez-Pinera, P.2
  • 3
    • 84904857603 scopus 로고    scopus 로고
    • Applications of TALENs and CRISPR/Cas9 in human cells and their potentials for gene therapy
    • Niu, J., Zhang, B., Chen, H. Applications of TALENs and CRISPR/Cas9 in human cells and their potentials for gene therapy. Mol Biotechnol 56, 681-688 (2014).
    • (2014) Mol Biotechnol , vol.56 , pp. 681-688
    • Niu, J.1    Zhang, B.2    Chen, H.3
  • 4
    • 72149110399 scopus 로고    scopus 로고
    • Breaking the code of DNA binding specificity of TAL-type III effectors
    • Boch, J. et al. Breaking the code of DNA binding specificity of TAL-type III effectors. Science 326, 1509-1512 (2009).
    • (2009) Science , vol.326 , pp. 1509-1512
    • Boch, J.1
  • 5
    • 72149090954 scopus 로고    scopus 로고
    • A simple cipher governs DNA recognition by TAL effectors
    • Moscou, M. J., Bogdanove, A. J. A simple cipher governs DNA recognition by TAL effectors. Science 326, 1501 (2009).
    • (2009) Science , vol.326 , pp. 1501
    • Moscou, M.J.1    Bogdanove, A.J.2
  • 6
    • 84857032466 scopus 로고    scopus 로고
    • Structural basis for sequence-specific recognition of DNA by TAL effectors
    • Deng, D. et al. Structural basis for sequence-specific recognition of DNA by TAL effectors. Science 335, 720-723 (2012).
    • (2012) Science , vol.335 , pp. 720-723
    • Deng, D.1
  • 7
    • 84857029597 scopus 로고    scopus 로고
    • The crystal structure of TAL effector PthXo1 bound to its DNA target
    • Mak, A. N., Bradley, P., Cernadas, R. A., Bogdanove, A. J., Stoddard, B. L. The crystal structure of TAL effector PthXo1 bound to its DNA target. Science 335, 716-719 (2012).
    • (2012) Science , vol.335 , pp. 716-719
    • Mak, A.N.1    Bradley, P.2    Cernadas, R.A.3    Bogdanove, A.J.4    Stoddard, B.L.5
  • 8
    • 84883588736 scopus 로고    scopus 로고
    • Structure of the AvrBs3-DNA complex provides new insights into the initial thymine-recognition mechanism
    • Stella, S. et al. Structure of the AvrBs3-DNA complex provides new insights into the initial thymine-recognition mechanism. Acta Crystallogr D Biol Crystallogr 69, 1707-1716 (2013).
    • (2013) Acta Crystallogr D Biol Crystallogr , vol.69 , pp. 1707-1716
    • Stella, S.1
  • 9
    • 84864856835 scopus 로고    scopus 로고
    • Comprehensive interrogation of natural TALE DNA-binding modules and transcriptional repressor domains
    • Cong, L., Zhou, R., Kuo, Y. C., Cunniff, M., Zhang, F. Comprehensive interrogation of natural TALE DNA-binding modules and transcriptional repressor domains. Nat Commun 3, 968 (2012).
    • (2012) Nat Commun , vol.3 , pp. 968
    • Cong, L.1    Zhou, R.2    Kuo, Y.C.3    Cunniff, M.4    Zhang, F.5
  • 11
    • 84862745388 scopus 로고    scopus 로고
    • Chromosomal context and epigenetic mechanisms control the efficacy of genome editing by rare-cutting designer endonucleases
    • Daboussi, F. et al. Chromosomal context and epigenetic mechanisms control the efficacy of genome editing by rare-cutting designer endonucleases. Nucleic Acids Res 40, 6367-6379 (2012).
    • (2012) Nucleic Acids Res , vol.40 , pp. 6367-6379
    • Daboussi, F.1
  • 12
    • 84899882297 scopus 로고    scopus 로고
    • Comprehensive analysis of the specificity of transcription activator-like effector nucleases
    • Juillerat, A. et al. Comprehensive analysis of the specificity of transcription activator-like effector nucleases. Nucleic Acids Res 42, 5390-5402 (2014).
    • (2014) Nucleic Acids Res , vol.42 , pp. 5390-5402
    • Juillerat, A.1
  • 13
    • 28944449341 scopus 로고    scopus 로고
    • Engineering of large numbers of highly specific homing endonucleases that induce recombination on novel DNA targets
    • Arnould, S. et al. Engineering of large numbers of highly specific homing endonucleases that induce recombination on novel DNA targets. J Mol Biol 355, 443-458 (2006).
    • (2006) J Mol Biol , vol.355 , pp. 443-458
    • Arnould, S.1
  • 14
    • 84901813823 scopus 로고    scopus 로고
    • Genome engineering empowers the diatom Phaeodactylum tricornutum for biotechnology
    • Daboussi, F. et al. Genome engineering empowers the diatom Phaeodactylum tricornutum for biotechnology. Nat Commun 5, 3831 (2014).
    • (2014) Nat Commun , vol.5 , pp. 3831
    • Daboussi, F.1
  • 15
    • 84876557961 scopus 로고    scopus 로고
    • Quantitative analysis of TALE-DNA interactions suggests polarity effects
    • Meckler, J. F. et al. Quantitative analysis of TALE-DNA interactions suggests polarity effects. Nucleic Acids Res 41, 4118-4128 (2013).
    • (2013) Nucleic Acids Res , vol.41 , pp. 4118-4128
    • Meckler, J.F.1
  • 16
    • 84899905504 scopus 로고    scopus 로고
    • Complete decoding of TAL effectors for DNA recognition
    • Yang, J. et al. Complete decoding of TAL effectors for DNA recognition. Cell Res 24, 628-631 (2014).
    • (2014) Cell Res , vol.24 , pp. 628-631
    • Yang, J.1
  • 17
    • 84884160273 scopus 로고    scopus 로고
    • CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering
    • Mali, P. et al. CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat Biotechnol 31, 833-838 (2013).
    • (2013) Nat Biotechnol , vol.31 , pp. 833-838
    • Mali, P.1
  • 18
    • 84897954502 scopus 로고    scopus 로고
    • Broad specificity profiling of TALENs results in engineered nucleases with improved DNA-cleavage specificity
    • Guilinger, J. P. et al. Broad specificity profiling of TALENs results in engineered nucleases with improved DNA-cleavage specificity. Nat Methods 11, 429-435 (2014).
    • (2014) Nat Methods , vol.11 , pp. 429-435
    • Guilinger, J.P.1
  • 19
    • 79751487297 scopus 로고    scopus 로고
    • Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription
    • Zhang, F. et al. Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription. Nat Biotechnol 29, 149-153 (2011).
    • (2011) Nat Biotechnol , vol.29 , pp. 149-153
    • Zhang, F.1
  • 20
    • 84870579235 scopus 로고    scopus 로고
    • 3rd Chimeric TALE recombinases with programmable DNA sequence specificity
    • Mercer, A. C., Gaj, T., Fuller, R. P., Barbas, C. F. 3rd Chimeric TALE recombinases with programmable DNA sequence specificity. Nucleic Acids Res 40, 11163-11172 (2012).
    • (2012) Nucleic Acids Res , vol.40 , pp. 11163-11172
    • Mercer, A.C.1    Gaj, T.2    Fuller, R.P.3    Barbas, C.F.4
  • 21
    • 84908075475 scopus 로고    scopus 로고
    • 3rd Regulation of Endogenous Human Gene Expression by Ligand-Inducible TALE Transcription Factors
    • Mercer, A. C., Gaj, T., Sirk, S. J., Lamb, B. M., Barbas, C. F. 3rd Regulation of Endogenous Human Gene Expression by Ligand-Inducible TALE Transcription Factors. ACS Synth Biol 3, 723-730 (2013).
    • (2013) ACS Synth Biol , vol.3 , pp. 723-730
    • Mercer, A.C.1    Gaj, T.2    Sirk, S.J.3    Lamb, B.M.4    Barbas, C.F.5
  • 22
    • 84891942333 scopus 로고    scopus 로고
    • TALE-PvuII Fusion Proteins-Novel Tools for Gene Targeting
    • Yanik, M. et al. TALE-PvuII Fusion Proteins-Novel Tools for Gene Targeting. PLoS One 8, e82539 (2013).
    • (2013) PLoS One , vol.8 , pp. e82539
    • Yanik, M.1
  • 23
    • 84890048526 scopus 로고    scopus 로고
    • Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins
    • Maeder, M. L. et al. Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins. Nat Biotechnol 31, 1137-1142 (2013).
    • (2013) Nat Biotechnol , vol.31 , pp. 1137-1142
    • Maeder, M.L.1
  • 25
    • 84877782609 scopus 로고    scopus 로고
    • Compact designer TALENs for efficient genome engineering
    • Beurdeley, M. et al. Compact designer TALENs for efficient genome engineering. Nat Commun 4, 1762 (2013).
    • (2013) Nat Commun , vol.4 , pp. 1762
    • Beurdeley, M.1
  • 26
    • 84895783187 scopus 로고    scopus 로고
    • MegaTALs: A rare-cleaving nuclease architecture for therapeutic genome engineering
    • Boissel, S. et al. megaTALs: a rare-cleaving nuclease architecture for therapeutic genome engineering. Nucleic Acids Res 42, 2591-2601 (2014).
    • (2014) Nucleic Acids Res , vol.42 , pp. 2591-2601
    • Boissel, S.1
  • 27
    • 84886084801 scopus 로고    scopus 로고
    • Locus-specific editing of histone modifications at endogenous enhancers
    • Mendenhall, E. M. et al. Locus-specific editing of histone modifications at endogenous enhancers. Nat Biotechnol 31, 1133-1136 (2013).
    • (2013) Nat Biotechnol , vol.31 , pp. 1133-1136
    • Mendenhall, E.M.1
  • 28
    • 84886048819 scopus 로고    scopus 로고
    • Transcription activator like effector (TALE)-directed piggyBac transposition in human cells
    • Owens, J. B. et al. Transcription activator like effector (TALE)-directed piggyBac transposition in human cells. Nucleic Acids Res 41, 9197-9207 (2013).
    • (2013) Nucleic Acids Res , vol.41 , pp. 9197-9207
    • Owens, J.B.1
  • 29
    • 84882976110 scopus 로고    scopus 로고
    • Optical control ofmammalian endogenous transcription and epigenetic states
    • Konermann, S. et al.Optical control ofmammalian endogenous transcription and epigenetic states. Nature 500, 472-476 (2013).
    • (2013) Nature , vol.500 , pp. 472-476
    • Konermann, S.1
  • 30
    • 84891385829 scopus 로고    scopus 로고
    • Transcription activator-like effector nucleases (TALENs): A highly efficient and versatile tool for genome editing
    • Sun, N., Zhao, H. Transcription activator-like effector nucleases (TALENs): a highly efficient and versatile tool for genome editing. Biotechnol Bioeng 110, 1811-1821 (2013).
    • (2013) Biotechnol Bioeng , vol.110 , pp. 1811-1821
    • Sun, N.1    Zhao, H.2
  • 31
    • 79961185942 scopus 로고    scopus 로고
    • Heritable gene targeting in zebrafish using customized TALENs
    • Huang, P. et al. Heritable gene targeting in zebrafish using customized TALENs. Nat Biotechnol 29, 699-700 (2011).
    • (2011) Nat Biotechnol , vol.29 , pp. 699-700
    • Huang, P.1
  • 32
    • 84866721599 scopus 로고    scopus 로고
    • Targeting G with TAL effectors: A comparison of activities of TALENs constructed with NN and NK repeat variable di-residues
    • Christian, M. L. et al. Targeting G with TAL effectors: a comparison of activities of TALENs constructed with NN and NK repeat variable di-residues. PLoS One 7, e45383 (2012).
    • (2012) PLoS One , vol.7 , pp. e45383
    • Christian, M.L.1
  • 33
    • 84872203111 scopus 로고    scopus 로고
    • Aligationindependent cloning technique for high-throughput assembly of transcription activator-like effector genes
    • Schmid-Burgk, J. L., Schmidt, T., Kaiser, V., Honing, K., Hornung, V. Aligationindependent cloning technique for high-throughput assembly of transcription activator-like effector genes. Nat Biotechnol 31, 76-81 (2013).
    • (2013) Nat Biotechnol , vol.31 , pp. 76-81
    • Schmid-Burgk, J.L.1    Schmidt, T.2    Kaiser, V.3    Honing, K.4    Hornung, V.5
  • 34
    • 84860747716 scopus 로고    scopus 로고
    • FLASH assembly of TALENs for high-throughput genome editing
    • Reyon, D. et al. FLASH assembly of TALENs for high-throughput genome editing. Nat Biotechnol 30, 460-465 (2012).
    • (2012) Nat Biotechnol , vol.30 , pp. 460-465
    • Reyon, D.1
  • 35
    • 79960064013 scopus 로고    scopus 로고
    • Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting
    • Cermak, T. et al. Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic Acids Res 39, e82 (2011).
    • (2011) Nucleic Acids Res , vol.39 , pp. e82
    • Cermak, T.1
  • 36
    • 84867300642 scopus 로고    scopus 로고
    • Engineering synthetic TAL effectors with orthogonal target sites
    • Garg, A., Lohmueller, J. J., Silver, P. A., Armel, T. Z. Engineering synthetic TAL effectors with orthogonal target sites. Nucleic Acids Res 40, 7584-7595 (2012).
    • (2012) Nucleic Acids Res , vol.40 , pp. 7584-7595
    • Garg, A.1    Lohmueller, J.J.2    Silver, P.A.3    Armel, T.Z.4
  • 37
    • 84924031551 scopus 로고    scopus 로고
    • Exploring the transcription activator-like effectors scaffold versatility to expand the toolbox of designer nucleases
    • Juillerat, A. et al. Exploring the transcription activator-like effectors scaffold versatility to expand the toolbox of designer nucleases. BMC Mol Biol 15, 13 (2014).
    • (2014) BMC Mol Biol , vol.15 , pp. 13
    • Juillerat, A.1
  • 38
    • 84869046680 scopus 로고    scopus 로고
    • Overcoming TALE DNA Binding Domain Sensitivity to Cytosine Methylation
    • Valton, J. et al. Overcoming TALE DNA Binding Domain Sensitivity to Cytosine Methylation. J Biol Chem 287, 38427-38432 (2012).
    • (2012) J Biol Chem , vol.287 , pp. 38427-38432
    • Valton, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.