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Volumn 11, Issue 9, 2015, Pages

Analysis of Nearly One Thousand Mammalian Mirtrons Reveals Novel Features of Dicer Substrates

Author keywords

[No Author keywords available]

Indexed keywords

BIOSYNTHESIS; MACHINERY; MAMMALS; RNA;

EID: 84943574319     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1004441     Document Type: Article
Times cited : (60)

References (66)
  • 1
    • 54149095553 scopus 로고    scopus 로고
    • Biological principles of microRNA-mediated regulation: shared themes amid diversity
    • Flynt AS, Lai EC, (2008) Biological principles of microRNA-mediated regulation: shared themes amid diversity. Nature reviews Genetics 9: 831–842. doi: 10.1038/nrg2455 18852696
    • (2008) Nature reviews Genetics , vol.9 , pp. 831-842
    • Flynt, A.S.1    Lai, E.C.2
  • 2
    • 84880921276 scopus 로고    scopus 로고
    • Adult-specific functions of animal microRNAs
    • Sun K, Lai EC, (2013) Adult-specific functions of animal microRNAs. Nature Reviews Genetics 14: 535–548. doi: 10.1038/nrg3471 23817310
    • (2013) Nature Reviews Genetics , vol.14 , pp. 535-548
    • Sun, K.1    Lai, E.C.2
  • 3
    • 79955379930 scopus 로고    scopus 로고
    • Vive la différence: biogenesis and evolution of microRNAs in plants and animals
    • Axtell MJ, Westholm JO, Lai EC, (2011) Vive la différence: biogenesis and evolution of microRNAs in plants and animals. Genome Biology 12: 221–221.213. doi: 10.1186/gb-2011-12-4-221 21554756
    • (2011) Genome Biology , vol.12 , pp. 213-221
    • Axtell, M.J.1    Westholm, J.O.2    Lai, E.C.3
  • 4
    • 58449134534 scopus 로고    scopus 로고
    • Small silencing RNAs: an expanding universe
    • Ghildiyal M, Zamore PD, (2009) Small silencing RNAs: an expanding universe. Nature Reviews Genetics 10: 94–108. doi: 10.1038/nrg2504 19148191
    • (2009) Nature Reviews Genetics , vol.10 , pp. 94-108
    • Ghildiyal, M.1    Zamore, P.D.2
  • 5
    • 78650306521 scopus 로고    scopus 로고
    • Small RNA sorting: matchmaking for Argonautes
    • Czech B, Hannon GJ, (2010) Small RNA sorting: matchmaking for Argonautes. Nature Reviews Genetics 12: 19–31. doi: 10.1038/nrg2916 21116305
    • (2010) Nature Reviews Genetics , vol.12 , pp. 19-31
    • Czech, B.1    Hannon, G.J.2
  • 6
    • 80052996141 scopus 로고    scopus 로고
    • Alternative miRNA biogenesis pathways and the interpretation of core miRNA pathway mutants
    • Yang JS, Lai EC, (2011) Alternative miRNA biogenesis pathways and the interpretation of core miRNA pathway mutants. Molecular Cell 43: 892–903. doi: 10.1016/j.molcel.2011.07.024 21925378
    • (2011) Molecular Cell , vol.43 , pp. 892-903
    • Yang, J.S.1    Lai, E.C.2
  • 7
    • 34447097693 scopus 로고    scopus 로고
    • Intronic microRNA precursors that bypass Drosha processing
    • Ruby JG, Jan CH, Bartel DP, (2007) Intronic microRNA precursors that bypass Drosha processing. Nature 448: 83–86. 17589500
    • (2007) Nature , vol.448 , pp. 83-86
    • Ruby, J.G.1    Jan, C.H.2    Bartel, D.P.3
  • 8
    • 34447107760 scopus 로고    scopus 로고
    • The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila
    • Okamura K, Hagen JW, Duan H, Tyler DM, Lai EC, (2007) The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila. Cell 130: 89–100. 17599402
    • (2007) Cell , vol.130 , pp. 89-100
    • Okamura, K.1    Hagen, J.W.2    Duan, H.3    Tyler, D.M.4    Lai, E.C.5
  • 9
    • 80053574171 scopus 로고    scopus 로고
    • mirtrons: microRNA biogenesis via splicing
    • Westholm JO, Lai EC, (2011) mirtrons: microRNA biogenesis via splicing. Biochimie 93: 1897–1904. doi: 10.1016/j.biochi.2011.06.017 21712066
    • (2011) Biochimie , vol.93 , pp. 1897-1904
    • Westholm, J.O.1    Lai, E.C.2
  • 10
    • 77955500933 scopus 로고    scopus 로고
    • microRNA biogenesis via splicing and exosome-mediated trimming in Drosophila
    • Flynt AS, Chung WJ, Greimann JC, Lima CD, Lai EC, (2010) microRNA biogenesis via splicing and exosome-mediated trimming in Drosophila. Molecular Cell 38: 900–907. doi: 10.1016/j.molcel.2010.06.014 20620959
    • (2010) Molecular Cell , vol.38 , pp. 900-907
    • Flynt, A.S.1    Chung, W.J.2    Greimann, J.C.3    Lima, C.D.4    Lai, E.C.5
  • 11
    • 54349104464 scopus 로고    scopus 로고
    • Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs
    • Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R, (2008) Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs. Genes & Development 22: 2773–2785.
    • (2008) Genes & Development , vol.22 , pp. 2773-2785
    • Babiarz, J.E.1    Ruby, J.G.2    Wang, Y.3    Bartel, D.P.4    Blelloch, R.5
  • 12
    • 44849106063 scopus 로고    scopus 로고
    • A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    • Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, et al. (2008) A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach. Genome Research 18: 957–964. doi: 10.1101/gr.074740.107 18469162
    • (2008) Genome Research , vol.18 , pp. 957-964
    • Glazov, E.A.1    Cottee, P.A.2    Barris, W.C.3    Moore, R.J.4    Dalrymple, B.P.5
  • 13
    • 84865837750 scopus 로고    scopus 로고
    • Discovery of hundreds of mirtrons in mouse and human small RNA data
    • Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC, (2012) Discovery of hundreds of mirtrons in mouse and human small RNA data. Genome Research 22: 1634–1645. doi: 10.1101/gr.133553.111 22955976
    • (2012) Genome Research , vol.22 , pp. 1634-1645
    • Ladewig, E.1    Okamura, K.2    Flynt, A.S.3    Westholm, J.O.4    Lai, E.C.5
  • 14
    • 84876374428 scopus 로고    scopus 로고
    • Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues
    • Castellano L, Stebbing J, (2013) Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues. Nucleic Acids Research 41: 3339–3351. doi: 10.1093/nar/gks1474 23325850
    • (2013) Nucleic Acids Research , vol.41 , pp. 3339-3351
    • Castellano, L.1    Stebbing, J.2
  • 16
    • 77953897182 scopus 로고    scopus 로고
    • A Novel miRNA Processing Pathway Independent of Dicer Requires Argonaute2 Catalytic Activity
    • Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, et al. (2010) A Novel miRNA Processing Pathway Independent of Dicer Requires Argonaute2 Catalytic Activity. Science 328: 1694–1698. doi: 10.1126/science.1190809 20448148
    • (2010) Science , vol.328 , pp. 1694-1698
    • Cifuentes, D.1    Xue, H.2    Taylor, D.W.3    Patnode, H.4    Mishima, Y.5
  • 17
    • 77953183812 scopus 로고    scopus 로고
    • A dicer-independent miRNA biogenesis pathway that requires Ago catalysis
    • Cheloufi S, Dos Santos CO, Chong MM, Hannon GJ, (2010) A dicer-independent miRNA biogenesis pathway that requires Ago catalysis. Nature 465: 584–589. doi: 10.1038/nature09092 20424607
    • (2010) Nature , vol.465 , pp. 584-589
    • Cheloufi, S.1    Dos Santos, C.O.2    Chong, M.M.3    Hannon, G.J.4
  • 18
    • 34748880173 scopus 로고    scopus 로고
    • A novel monoclonal antibody against human Argonaute proteins reveals unexpected characteristics of miRNAs in human blood cells
    • Nelson PT, De Planell-Saguer M, Lamprinaki S, Kiriakidou M, Zhang P, et al. (2007) A novel monoclonal antibody against human Argonaute proteins reveals unexpected characteristics of miRNAs in human blood cells. RNA 13: 1787–1792. 17720879
    • (2007) RNA , vol.13 , pp. 1787-1792
    • Nelson, P.T.1    De Planell-Saguer, M.2    Lamprinaki, S.3    Kiriakidou, M.4    Zhang, P.5
  • 19
    • 75749098853 scopus 로고    scopus 로고
    • MicroRNA Function Is Globally Suppressed in Mouse Oocytes and Early Embryos
    • Suh N, Baehner L, Moltzahn F, Melton C, Shenoy A, et al. (2010) MicroRNA Function Is Globally Suppressed in Mouse Oocytes and Early Embryos. Current Biology 20: 271–277. doi: 10.1016/j.cub.2009.12.044 20116247
    • (2010) Current Biology , vol.20 , pp. 271-277
    • Suh, N.1    Baehner, L.2    Moltzahn, F.3    Melton, C.4    Shenoy, A.5
  • 20
    • 75749103314 scopus 로고    scopus 로고
    • MicroRNA activity is suppressed in mouse oocytes
    • Ma J, Flemr M, Stein P, Berninger P, Malik R, et al. (2010) MicroRNA activity is suppressed in mouse oocytes. Curr Biol 20: 265–270. doi: 10.1016/j.cub.2009.12.042 20116252
    • (2010) Curr Biol , vol.20 , pp. 265-270
    • Ma, J.1    Flemr, M.2    Stein, P.3    Berninger, P.4    Malik, R.5
  • 21
    • 44349159416 scopus 로고    scopus 로고
    • Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes
    • Tam OH, Aravin AA, Stein P, Girard A, Murchison EP, et al. (2008) Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes. Nature 453: 534–538. doi: 10.1038/nature06904 18404147
    • (2008) Nature , vol.453 , pp. 534-538
    • Tam, O.H.1    Aravin, A.A.2    Stein, P.3    Girard, A.4    Murchison, E.P.5
  • 22
    • 44349130233 scopus 로고    scopus 로고
    • Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
    • Watanabe T, Totoki Y, Toyoda A, Kaneda M, Kuramochi-Miyagawa S, et al. (2008) Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes. Nature 453: 539–543. doi: 10.1038/nature06908 18404146
    • (2008) Nature , vol.453 , pp. 539-543
    • Watanabe, T.1    Totoki, Y.2    Toyoda, A.3    Kaneda, M.4    Kuramochi-Miyagawa, S.5
  • 23
    • 84887865235 scopus 로고    scopus 로고
    • A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes
    • Flemr M, Malik R, Franke V, Nejepinska J, Sedlacek R, et al. (2013) A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes. Cell 155: 807–816. doi: 10.1016/j.cell.2013.10.001 24209619
    • (2013) Cell , vol.155 , pp. 807-816
    • Flemr, M.1    Malik, R.2    Franke, V.3    Nejepinska, J.4    Sedlacek, R.5
  • 24
    • 78649894176 scopus 로고    scopus 로고
    • Dicer-independent, Ago2-mediated microRNA biogenesis in vertebrates
    • Yang JS, Lai EC, (2010) Dicer-independent, Ago2-mediated microRNA biogenesis in vertebrates. Cell Cycle 9: 4455–4460. 21088485
    • (2010) Cell Cycle , vol.9 , pp. 4455-4460
    • Yang, J.S.1    Lai, E.C.2
  • 25
    • 77952368550 scopus 로고    scopus 로고
    • Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    • Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, et al. (2010) Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. Genes & Development 24: 992–1009.
    • (2010) Genes & Development , vol.24 , pp. 992-1009
    • Chiang, H.R.1    Schoenfeld, L.W.2    Ruby, J.G.3    Auyeung, V.C.4    Spies, N.5
  • 26
    • 84899794728 scopus 로고    scopus 로고
    • Evidence for the biogenesis of more than 1,000 novel human microRNAs
    • Friedlander MR, Lizano E, Houben AJ, Bezdan D, Banez-Coronel M, et al. (2014) Evidence for the biogenesis of more than 1,000 novel human microRNAs. Genome Biology 15: R57. doi: 10.1186/gb-2014-15-4-r57 24708865
    • (2014) Genome Biology , vol.15 , pp. 57
    • Friedlander, M.R.1    Lizano, E.2    Houben, A.J.3    Bezdan, D.4    Banez-Coronel, M.5
  • 28
    • 84865757142 scopus 로고    scopus 로고
    • Landscape of transcription in human cells
    • Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, et al. (2012) Landscape of transcription in human cells. Nature 489: 101–108. doi: 10.1038/nature11233 22955620
    • (2012) Nature , vol.489 , pp. 101-108
    • Djebali, S.1    Davis, C.A.2    Merkel, A.3    Dobin, A.4    Lassmann, T.5
  • 29
    • 84907401383 scopus 로고    scopus 로고
    • Diversity and dynamics of the Drosophila transcriptome
    • Brown JB, Boley N, Eisman R, May G, Stoiber M, et al. (2014) Diversity and dynamics of the Drosophila transcriptome. Nature 512: 393–399. 24670639
    • (2014) Nature , vol.512 , pp. 393-399
    • Brown, J.B.1    Boley, N.2    Eisman, R.3    May, G.4    Stoiber, M.5
  • 30
    • 73349122299 scopus 로고    scopus 로고
    • Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    • Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, et al. (2010) Evolutionary flux of canonical microRNAs and mirtrons in Drosophila. Nature Genetics 42: 6–9. doi: 10.1038/ng0110-6 20037610
    • (2010) Nature Genetics , vol.42 , pp. 6-9
    • Berezikov, E.1    Liu, N.2    Flynt, A.S.3    Hodges, E.4    Rooks, M.5
  • 31
    • 84856009181 scopus 로고    scopus 로고
    • Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs
    • Westholm JO, Ladewig E, Okamura K, Robine N, Lai EC, (2012) Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs. RNA 18: 177–192. doi: 10.1261/rna.030627.111 22190743
    • (2012) RNA , vol.18 , pp. 177-192
    • Westholm, J.O.1    Ladewig, E.2    Okamura, K.3    Robine, N.4    Lai, E.C.5
  • 32
    • 84863031552 scopus 로고    scopus 로고
    • Cell-type-based analysis of microRNA profiles in the mouse brain
    • He M, Liu Y, Wang X, Zhang MQ, Hannon GJ, et al. (2012) Cell-type-based analysis of microRNA profiles in the mouse brain. Neuron 73: 35–48. doi: 10.1016/j.neuron.2011.11.010 22243745
    • (2012) Neuron , vol.73 , pp. 35-48
    • He, M.1    Liu, Y.2    Wang, X.3    Zhang, M.Q.4    Hannon, G.J.5
  • 33
    • 84875422712 scopus 로고    scopus 로고
    • Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2
    • Polikepahad S, Corry DB, (2013) Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2. Nucleic Acids Research 41: 1164–1177. doi: 10.1093/nar/gks1098 23185045
    • (2013) Nucleic Acids Research , vol.41 , pp. 1164-1177
    • Polikepahad, S.1    Corry, D.B.2
  • 34
    • 84859342130 scopus 로고    scopus 로고
    • Quantitative functions of Argonaute proteins in mammalian development
    • Wang D, Zhang Z, O'Loughlin E, Lee T, Houel S, et al. (2012) Quantitative functions of Argonaute proteins in mammalian development. Genes & Development 26: 693–704.
    • (2012) Genes & Development , vol.26 , pp. 693-704
    • Wang, D.1    Zhang, Z.2    O'Loughlin, E.3    Lee, T.4    Houel, S.5
  • 35
    • 84860894908 scopus 로고    scopus 로고
    • Degradation of cellular mir-27 by a novel, highly abundant viral transcript is important for efficient virus replication in vivo
    • Marcinowski L, Tanguy M, Krmpotic A, Radle B, Lisnic VJ, et al. (2012) Degradation of cellular mir-27 by a novel, highly abundant viral transcript is important for efficient virus replication in vivo. PLoS Pathogens 8: e1002510. doi: 10.1371/journal.ppat.1002510 22346748
    • (2012) PLoS Pathogens , vol.8 , pp. 1002510
    • Marcinowski, L.1    Tanguy, M.2    Krmpotic, A.3    Radle, B.4    Lisnic, V.J.5
  • 36
    • 84876351771 scopus 로고    scopus 로고
    • Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals
    • Okamura K, Ladewig E, Zhou L, Lai EC, (2013) Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals. Genes & Development 27: 778–792.
    • (2013) Genes & Development , vol.27 , pp. 778-792
    • Okamura, K.1    Ladewig, E.2    Zhou, L.3    Lai, E.C.4
  • 37
    • 84876349900 scopus 로고    scopus 로고
    • Loop-miRs: active microRNAs generated from single-stranded loop regions
    • Winter J, Link S, Witzigmann D, Hildenbrand C, Previti C, et al. (2013) Loop-miRs: active microRNAs generated from single-stranded loop regions. Nucleic Acids Research 41: 5503–5512. doi: 10.1093/nar/gkt251 23580554
    • (2013) Nucleic Acids Research , vol.41 , pp. 5503-5512
    • Winter, J.1    Link, S.2    Witzigmann, D.3    Hildenbrand, C.4    Previti, C.5
  • 38
    • 79551586302 scopus 로고    scopus 로고
    • Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    • Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, et al. (2011) Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence. Genome Research 21: 203–215. doi: 10.1101/gr.116657.110 21177969
    • (2011) Genome Research , vol.21 , pp. 203-215
    • Berezikov, E.1    Robine, N.2    Samsonova, A.3    Westholm, J.O.4    Naqvi, A.5
  • 39
    • 0142165224 scopus 로고    scopus 로고
    • Functional siRNAs and miRNAs exhibit strand bias
    • Khvorova A, Reynolds A, Jayasena SD, (2003) Functional siRNAs and miRNAs exhibit strand bias. Cell 115: 209–216. 14567918
    • (2003) Cell , vol.115 , pp. 209-216
    • Khvorova, A.1    Reynolds, A.2    Jayasena, S.D.3
  • 40
    • 10744225153 scopus 로고    scopus 로고
    • Asymmetry in the assembly of the RNAi enzyme complex
    • Schwarz DS, Hutvagner G, Du T, Xu Z, Aronin N, et al. (2003) Asymmetry in the assembly of the RNAi enzyme complex. Cell 115: 199–208. 14567917
    • (2003) Cell , vol.115 , pp. 199-208
    • Schwarz, D.S.1    Hutvagner, G.2    Du, T.3    Xu, Z.4    Aronin, N.5
  • 41
    • 0038825783 scopus 로고    scopus 로고
    • Computational identification of Drosophila microRNA genes
    • Lai EC, Tomancak P, Williams RW, Rubin GM, (2003) Computational identification of Drosophila microRNA genes. Genome Biology 4: R42.41–R42.20.
    • (2003) Genome Biology , vol.4 , pp. 20-41
    • Lai, E.C.1    Tomancak, P.2    Williams, R.W.3    Rubin, G.M.4
  • 43
    • 84868097965 scopus 로고    scopus 로고
    • microRNAs associated with the different human Argonaute proteins
    • Dueck A, Ziegler C, Eichner A, Berezikov E, Meister G, (2012) microRNAs associated with the different human Argonaute proteins. Nucleic Acids Research 40: 9850–9862. doi: 10.1093/nar/gks705 22844086
    • (2012) Nucleic Acids Research , vol.40 , pp. 9850-9862
    • Dueck, A.1    Ziegler, C.2    Eichner, A.3    Berezikov, E.4    Meister, G.5
  • 44
    • 6344281172 scopus 로고    scopus 로고
    • Identification of mammalian microRNA host genes and transcription units
    • Rodriguez A, Griffiths-Jones S, Ashurst JL, Bradley A, (2004) Identification of mammalian microRNA host genes and transcription units. Genome Research 14: 1902–1910. 15364901
    • (2004) Genome Research , vol.14 , pp. 1902-1910
    • Rodriguez, A.1    Griffiths-Jones, S.2    Ashurst, J.L.3    Bradley, A.4
  • 45
    • 13944260434 scopus 로고    scopus 로고
    • Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes
    • Baskerville S, Bartel DP, (2005) Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. RNA 11: 241–247. 15701730
    • (2005) RNA , vol.11 , pp. 241-247
    • Baskerville, S.1    Bartel, D.P.2
  • 47
    • 57149116346 scopus 로고    scopus 로고
    • Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity
    • Martinez NJ, Ow MC, Reece-Hoyes JS, Barrasa MI, Ambros VR, et al. (2008) Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity. Genome Research 18: 2005–2015. doi: 10.1101/gr.083055.108 18981266
    • (2008) Genome Research , vol.18 , pp. 2005-2015
    • Martinez, N.J.1    Ow, M.C.2    Reece-Hoyes, J.S.3    Barrasa, M.I.4    Ambros, V.R.5
  • 48
    • 79956089851 scopus 로고    scopus 로고
    • Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage
    • Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, et al. (2011) Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage. Blood 117: 5340–5349. doi: 10.1182/blood-2010-10-316034 21403133
    • (2011) Blood , vol.117 , pp. 5340-5349
    • Spierings, D.C.1    McGoldrick, D.2    Hamilton-Easton, A.M.3    Neale, G.4    Murchison, E.P.5
  • 49
    • 22144486964 scopus 로고    scopus 로고
    • Subdivision of large introns in Drosophila by recursive splicing at nonexonic elements
    • Burnette JM, Miyamoto-Sato E, Schaub MA, Conklin J, Lopez AJ, (2005) Subdivision of large introns in Drosophila by recursive splicing at nonexonic elements. Genetics 170: 661–674. 15802507
    • (2005) Genetics , vol.170 , pp. 661-674
    • Burnette, J.M.1    Miyamoto-Sato, E.2    Schaub, M.A.3    Conklin, J.4    Lopez, A.J.5
  • 50
    • 70649088961 scopus 로고    scopus 로고
    • The peculiarities of large intron splicing in animals
    • Shepard S, McCreary M, Fedorov A, (2009) The peculiarities of large intron splicing in animals. PloS One 4: e7853. doi: 10.1371/journal.pone.0007853 19924226
    • (2009) PloS One , vol.4 , pp. 7853
    • Shepard, S.1    McCreary, M.2    Fedorov, A.3
  • 51
    • 77953479619 scopus 로고    scopus 로고
    • Structural basis for 5'-nucleotide base-specific recognition of guide RNA by human AGO2
    • Frank F, Sonenberg N, Nagar B, (2010) Structural basis for 5'-nucleotide base-specific recognition of guide RNA by human AGO2. Nature 465: 818–822. doi: 10.1038/nature09039 20505670
    • (2010) Nature , vol.465 , pp. 818-822
    • Frank, F.1    Sonenberg, N.2    Nagar, B.3
  • 52
    • 79551588017 scopus 로고    scopus 로고
    • Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans
    • Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, et al. (2011) Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans. Genome Research 21: 286–300. doi: 10.1101/gr.113050.110 21177960
    • (2011) Genome Research , vol.21 , pp. 286-300
    • Chung, W.J.1    Agius, P.2    Westholm, J.O.3    Chen, M.4    Okamura, K.5
  • 54
    • 84855275505 scopus 로고    scopus 로고
    • The biogenesis and characterization of mammalian microRNAs of mirtron origin
    • Sibley CR, Seow Y, Saayman S, Dijkstra KK, El Andaloussi S, et al. (2012) The biogenesis and characterization of mammalian microRNAs of mirtron origin. Nucleic Acids Research 40: 438–448. doi: 10.1093/nar/gkr722 21914725
    • (2012) Nucleic Acids Research , vol.40 , pp. 438-448
    • Sibley, C.R.1    Seow, Y.2    Saayman, S.3    Dijkstra, K.K.4    El Andaloussi, S.5
  • 55
    • 38149071979 scopus 로고    scopus 로고
    • Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    • Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, et al. (2007) Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs. Genome Research 17: 1850–1864. 17989254
    • (2007) Genome Research , vol.17 , pp. 1850-1864
    • Ruby, J.G.1    Stark, A.2    Johnston, W.K.3    Kellis, M.4    Bartel, D.P.5
  • 56
    • 84920565409 scopus 로고    scopus 로고
    • Adaptive regulation of testis gene expression and control of male fertility by the Drosophila harpin RNA pathway
    • Wen J, Duan H, Bejarano F, Okamura K, Fabian L, et al. (2015) Adaptive regulation of testis gene expression and control of male fertility by the Drosophila harpin RNA pathway. Molecular Cell 57: 165–178. doi: 10.1016/j.molcel.2014.11.025 25544562
    • (2015) Molecular Cell , vol.57 , pp. 165-178
    • Wen, J.1    Duan, H.2    Bejarano, F.3    Okamura, K.4    Fabian, L.5
  • 57
    • 30844438338 scopus 로고    scopus 로고
    • Structural basis for double-stranded RNA processing by Dicer
    • Macrae IJ, Zhou K, Li F, Repic A, Brooks AN, et al. (2006) Structural basis for double-stranded RNA processing by Dicer. Science 311: 195–198. 16410517
    • (2006) Science , vol.311 , pp. 195-198
    • Macrae, I.J.1    Zhou, K.2    Li, F.3    Repic, A.4    Brooks, A.N.5
  • 58
    • 79960185923 scopus 로고    scopus 로고
    • Dicer recognizes the 5' end of RNA for efficient and accurate processing
    • Park JE, Heo I, Tian Y, Simanshu DK, Chang H, et al. (2011) Dicer recognizes the 5' end of RNA for efficient and accurate processing. Nature 475: 201–205. doi: 10.1038/nature10198 21753850
    • (2011) Nature , vol.475 , pp. 201-205
    • Park, J.E.1    Heo, I.2    Tian, Y.3    Simanshu, D.K.4    Chang, H.5
  • 59
    • 84904263912 scopus 로고    scopus 로고
    • Diversity of miRNAs, siRNAs and piRNAs across 25 Drosophila cell lines
    • Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, et al. (2014) Diversity of miRNAs, siRNAs and piRNAs across 25 Drosophila cell lines. Genome Research 24: 1236–1250. doi: 10.1101/gr.161554.113 24985917
    • (2014) Genome Research , vol.24 , pp. 1236-1250
    • Wen, J.1    Mohammed, J.2    Bortolamiol-Becet, D.3    Tsai, H.4    Robine, N.5
  • 60
    • 84864448111 scopus 로고    scopus 로고
    • High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries
    • Mullokandov G, Baccarini A, Ruzo A, Jayaprakash AD, Tung N, et al. (2012) High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries. Nature Methods 9: 840–846. doi: 10.1038/nmeth.2078 22751203
    • (2012) Nature Methods , vol.9 , pp. 840-846
    • Mullokandov, G.1    Baccarini, A.2    Ruzo, A.3    Jayaprakash, A.D.4    Tung, N.5
  • 61
    • 84870038812 scopus 로고    scopus 로고
    • Argonaute divides its RNA guide into domains with distinct functions and RNA-binding properties
    • Wee LM, Flores-Jasso CF, Salomon WE, Zamore PD, (2012) Argonaute divides its RNA guide into domains with distinct functions and RNA-binding properties. Cell 151: 1055–1067. doi: 10.1016/j.cell.2012.10.036 23178124
    • (2012) Cell , vol.151 , pp. 1055-1067
    • Wee, L.M.1    Flores-Jasso, C.F.2    Salomon, W.E.3    Zamore, P.D.4
  • 62
    • 79960455119 scopus 로고    scopus 로고
    • A role for noncanonical microRNAs in the mammalian brain revealed by phenotypic differences in Dgcr8 versus Dicer1 knockouts and small RNA sequencing
    • Babiarz JE, Hsu R, Melton C, Thomas M, Ullian EM, et al. (2011) A role for noncanonical microRNAs in the mammalian brain revealed by phenotypic differences in Dgcr8 versus Dicer1 knockouts and small RNA sequencing. RNA 17: 1489–1501. doi: 10.1261/rna.2442211 21712401
    • (2011) RNA , vol.17 , pp. 1489-1501
    • Babiarz, J.E.1    Hsu, R.2    Melton, C.3    Thomas, M.4    Ullian, E.M.5
  • 63
    • 84904985459 scopus 로고    scopus 로고
    • Regulation of microRNA biogenesis
    • Ha M, Kim VN, (2014) Regulation of microRNA biogenesis. Nature Reviews Molecular Cell Biology 15: 509–524. doi: 10.1038/nrm3838 25027649
    • (2014) Nature Reviews Molecular Cell Biology , vol.15 , pp. 509-524
    • Ha, M.1    Kim, V.N.2
  • 64
    • 84937438216 scopus 로고    scopus 로고
    • Selective Suppression of the Splicing-Mediated MicroRNA Pathway by the Terminal Uridyltransferase Tailor
    • Bortolamiol-Becet D, Hu F, Jee D, Wen J, Okamura K, et al (2015) Selective Suppression of the Splicing-Mediated MicroRNA Pathway by the Terminal Uridyltransferase Tailor. Molecular Cell 59: 217–228. doi: 10.1016/j.molcel.2015.05.034 26145174
    • (2015) Molecular Cell , vol.59 , pp. 217-228
    • Bortolamiol-Becet, D.1    Hu, F.2    Jee, D.3    Wen, J.4    Okamura, K.5
  • 65
    • 84937391821 scopus 로고    scopus 로고
    • Uridylation of RNA Hairpins by Tailor Confines the Emergence of MicroRNAs in Drosophila
    • Reimao-Pinto MM, Ignatova V, Burkard TR, Hung JH, Manzenreither RA, et al (2015) Uridylation of RNA Hairpins by Tailor Confines the Emergence of MicroRNAs in Drosophila. Molecular Cell 59: 203–216. doi: 10.1016/j.molcel.2015.05.033 26145176
    • (2015) Molecular Cell , vol.59 , pp. 203-216
    • Reimao-Pinto, M.M.1    Ignatova, V.2    Burkard, T.R.3    Hung, J.H.4    Manzenreither, R.A.5
  • 66
    • 84943514673 scopus 로고    scopus 로고
    • Meyer D, Dimitriadou E, Hornik K, Weingessel A, Leisch F (2014) e1071: Misc Functions of the Department of Statistics (e1071), TU Wien. R package: http://CRAN.R-project.org/package=e1071.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.