-
1
-
-
0030667434
-
Integrating genetic approaches into the discovery of anticancer drugs
-
Hartwell LH, Szankasi P, Roberts CJ, Murray AW, Friend SH (1997) Integrating genetic approaches into the discovery of anticancer drugs. Science 278(5340):1064-1068.
-
(1997)
Science
, vol.278
, Issue.5340
, pp. 1064-1068
-
-
Hartwell, L.H.1
Szankasi, P.2
Roberts, C.J.3
Murray, A.W.4
Friend, S.H.5
-
2
-
-
75649111192
-
The genetic landscape of a cell
-
Costanzo M, et al. (2010) The genetic landscape of a cell. Science 327(5964):425-431.
-
(2010)
Science
, vol.327
, Issue.5964
, pp. 425-431
-
-
Costanzo, M.1
-
3
-
-
79959687662
-
An integrated approach to characterize genetic interaction networks in yeast metabolism
-
Szappanos B, et al. (2011) An integrated approach to characterize genetic interaction networks in yeast metabolism. Nat Genet 43(7):656-662.
-
(2011)
Nat Genet
, vol.43
, Issue.7
, pp. 656-662
-
-
Szappanos, B.1
-
4
-
-
69249102097
-
Genome-scale gene/reaction essentiality and synthetic lethality analysis
-
Suthers PF, Zomorrodi A, Maranas CD (2009) Genome-scale gene/reaction essentiality and synthetic lethality analysis. Mol Syst Biol 5:301.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 301
-
-
Suthers, P.F.1
Zomorrodi, A.2
Maranas, C.D.3
-
5
-
-
33748352373
-
Multiple knockout analysis of genetic robustness in the yeast metabolic network
-
Deutscher D, Meilijson I, Kupiec M, Ruppin E (2006) Multiple knockout analysis of genetic robustness in the yeast metabolic network. Nat Genet 38(9):993-998.
-
(2006)
Nat Genet
, vol.38
, Issue.9
, pp. 993-998
-
-
Deutscher, D.1
Meilijson, I.2
Kupiec, M.3
Ruppin, E.4
-
6
-
-
11244297914
-
Modular epistasis in yeast metabolism
-
Segrè D, Deluna A, Church GM, Kishony R (2005) Modular epistasis in yeast metabolism. Nat Genet 37(1):77-83.
-
(2005)
Nat Genet
, vol.37
, Issue.1
, pp. 77-83
-
-
Segrè, D.1
Deluna, A.2
Church, G.M.3
Kishony, R.4
-
7
-
-
79959621970
-
Predicting selective drug targets in cancer through metabolic networks
-
Folger O, et al. (2011) Predicting selective drug targets in cancer through metabolic networks. Mol Syst Biol 7:501.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 501
-
-
Folger, O.1
-
8
-
-
80052580351
-
Haem oxygenase is synthetically lethal with the tumour suppressor fumaratehydratase
-
Frezza C, et al. (2011) Haem oxygenase is synthetically lethal with the tumour suppressor fumaratehydratase. Nature 477(7363):225-228.
-
(2011)
Nature
, vol.477
, Issue.7363
, pp. 225-228
-
-
Frezza, C.1
-
9
-
-
84877303028
-
Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping
-
Laufer C, Fischer B, Billmann M, Huber W, Boutros M (2013) Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping. Nat Methods 10(5):427-431.
-
(2013)
Nat Methods
, vol.10
, Issue.5
, pp. 427-431
-
-
Laufer, C.1
Fischer, B.2
Billmann, M.3
Huber, W.4
Boutros, M.5
-
10
-
-
66149091940
-
A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene
-
Luo J, et al. (2009) A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene. Cell 137(5):835-848.
-
(2009)
Cell
, vol.137
, Issue.5
, pp. 835-848
-
-
Luo, J.1
-
11
-
-
84880302198
-
Genome evolution predicts genetic interactions in protein complexes and reveals cancer drug targets
-
Lu X, Kensche PR, Huynen MA, Notebaart RA (2013) Genome evolution predicts genetic interactions in protein complexes and reveals cancer drug targets. Nat Commun 4:2124.
-
(2013)
Nat Commun
, vol.4
, pp. 2124
-
-
Lu, X.1
Kensche, P.R.2
Huynen, M.A.3
Notebaart, R.A.4
-
12
-
-
25444497278
-
The concept of synthetic lethality in the context of anticancer therapy
-
Kaelin WG Jr (2005) The concept of synthetic lethality in the context of anticancer therapy. Nat Rev Cancer 5(9):689-698.
-
(2005)
Nat Rev Cancer
, vol.5
, Issue.9
, pp. 689-698
-
-
Kaelin, W.G.1
-
13
-
-
78649645676
-
Synthetic lethal approaches to breast cancer therapy
-
Rehman FL, Lord CJ, Ashworth A (2010) Synthetic lethal approaches to breast cancer therapy. Nat Rev Clin Oncol 7(12):718-724.
-
(2010)
Nat Rev Clin Oncol
, vol.7
, Issue.12
, pp. 718-724
-
-
Rehman, F.L.1
Lord, C.J.2
Ashworth, A.3
-
14
-
-
79955592811
-
Harnessing synthetic lethal interactions in anticancer drug discovery
-
Chan DA, Giaccia AJ (2011) Harnessing synthetic lethal interactions in anticancer drug discovery. Nat Rev Drug Discov 10(5):351-364.
-
(2011)
Nat Rev Drug Discov
, vol.10
, Issue.5
, pp. 351-364
-
-
Chan, D.A.1
Giaccia, A.J.2
-
15
-
-
0029870293
-
Establishing genetic interactions by a synthetic dosage lethality phenotype
-
Kroll ES, Hyland KM, Hieter P, Li JJ (1996) Establishing genetic interactions by a synthetic dosage lethality phenotype. Genetics 143(1):95-102.
-
(1996)
Genetics
, vol.143
, Issue.1
, pp. 95-102
-
-
Kroll, E.S.1
Hyland, K.M.2
Hieter, P.3
Li, J.J.4
-
16
-
-
84893369171
-
Synthetic genetic array screen identifies PP2A as a therapeutic target in Mad2-overexpressing tumors
-
Bian Y, et al. (2014) Synthetic genetic array screen identifies PP2A as a therapeutic target in Mad2-overexpressing tumors. Proc Natl Acad Sci USA 111(4):1628-1633.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, Issue.4
, pp. 1628-1633
-
-
Bian, Y.1
-
17
-
-
84879592166
-
Synthetic genetic targeting of genome instability in cancer
-
Basel
-
Sajesh BV, Guppy BJ, McManus KJ (2013) Synthetic genetic targeting of genome instability in cancer. Cancers (Basel) 5(3):739-761.
-
(2013)
Cancers
, vol.5
, Issue.3
, pp. 739-761
-
-
Sajesh, B.V.1
Guppy, B.J.2
McManus, K.J.3
-
18
-
-
31544482407
-
Mapping pathways and phenotypes by systematic gene overexpression
-
Sopko R, et al. (2006) Mapping pathways and phenotypes by systematic gene overexpression. Mol Cell 21(3):319-330.
-
(2006)
Mol Cell
, vol.21
, Issue.3
, pp. 319-330
-
-
Sopko, R.1
-
19
-
-
84888122057
-
Computational evaluation of cellular metabolic costs successfully predicts genes whose expression is deleterious
-
Wagner A, et al. (2013) Computational evaluation of cellular metabolic costs successfully predicts genes whose expression is deleterious. Proc Natl Acad Sci USA 110(47): 19166-19171.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.47
, pp. 19166-19171
-
-
Wagner, A.1
-
20
-
-
84907333139
-
Predicting cancer-specific vulnerability via data-driven detection of synthetic lethality
-
Jerby-Arnon L, et al. (2014) Predicting cancer-specific vulnerability via data-driven detection of synthetic lethality. Cell 158(5):1199-1209.
-
(2014)
Cell
, vol.158
, Issue.5
, pp. 1199-1209
-
-
Jerby-Arnon, L.1
-
21
-
-
34547888003
-
A genome-scale, constraint-based approach to systems biology of human metabolism
-
Mo ML, Jamshidi N, Palsson BØ (2007) A genome-scale, constraint-based approach to systems biology of human metabolism. Mol Biosyst 3(9):598-603.
-
(2007)
Mol Biosyst
, vol.3
, Issue.9
, pp. 598-603
-
-
Mo, M.L.1
Jamshidi, N.2
Palsson B.Ø.3
-
22
-
-
79551662521
-
Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox v2.0
-
Schellenberger J, et al. (2011) Quantitative prediction of cellular metabolism with constraint-based models: The COBRA Toolbox v2.0. Nat Protoc 6(9):1290-1307.
-
(2011)
Nat Protoc
, vol.6
, Issue.9
, pp. 1290-1307
-
-
Schellenberger, J.1
-
23
-
-
0037385718
-
Genome-scale microbial in silico models: The constraints-based approach
-
Price ND, Papin JA, Schilling CH, Palsson BO (2003) Genome-scale microbial in silico models: The constraints-based approach. Trends Biotechnol 21(4):162-169.
-
(2003)
Trends Biotechnol
, vol.21
, Issue.4
, pp. 162-169
-
-
Price, N.D.1
Papin, J.A.2
Schilling, C.H.3
Palsson, B.O.4
-
24
-
-
84877315835
-
A community-driven global reconstruction of human metabolism
-
Thiele I, et al. (2013) A community-driven global reconstruction of human metabolism. Nat Biotechnol 31(5):419-425.
-
(2013)
Nat Biotechnol
, vol.31
, Issue.5
, pp. 419-425
-
-
Thiele, I.1
-
25
-
-
77956048572
-
Genome-scale metabolic networks
-
Terzer M, Maynard ND, Covert MW, Stelling J (2009) Genome-scale metabolic networks. Wiley Interdiscip Rev Syst Biol Med 1(3):285-297.
-
(2009)
Wiley Interdiscip Rev Syst Biol Med
, vol.1
, Issue.3
, pp. 285-297
-
-
Terzer, M.1
Maynard, N.D.2
Covert, M.W.3
Stelling, J.4
-
26
-
-
45149111660
-
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
-
Feist AM, Palsson BØ (2008) The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli. Nat Biotechnol 26(6):659-667.
-
(2008)
Nat Biotechnol
, vol.26
, Issue.6
, pp. 659-667
-
-
Feist, A.M.1
Palsson B.Ø.2
-
28
-
-
9544253891
-
Genome-scale models of microbial cells: Evaluating the consequences of constraints
-
Price ND, Reed JL, Palsson BØ (2004) Genome-scale models of microbial cells: Evaluating the consequences of constraints. Nat Rev Microbiol 2(11):886-897.
-
(2004)
Nat Rev Microbiol
, vol.2
, Issue.11
, pp. 886-897
-
-
Price, N.D.1
Reed, J.L.2
Palsson B.Ø.3
-
29
-
-
84865571240
-
Network context and selection in the evolution to enzyme specificity
-
Nam H, et al. (2012) Network context and selection in the evolution to enzyme specificity. Science 337(6098):1101-1104.
-
(2012)
Science
, vol.337
, Issue.6098
, pp. 1101-1104
-
-
Nam, H.1
-
30
-
-
84905969902
-
Network-level architecture and the evolutionary potential of underground metabolism
-
Notebaart RA, et al. (2014) Network-level architecture and the evolutionary potential of underground metabolism. Proc Natl Acad Sci USA 111(32):11762-11767.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, Issue.32
, pp. 11762-11767
-
-
Notebaart, R.A.1
-
31
-
-
84867527044
-
Metabolic associations of reduced proliferation and oxidative stress in advanced breast cancer
-
Jerby L, et al. (2012) Metabolic associations of reduced proliferation and oxidative stress in advanced breast cancer. Cancer Res 72(22):5712-5720.
-
(2012)
Cancer Res
, vol.72
, Issue.22
, pp. 5712-5720
-
-
Jerby, L.1
-
32
-
-
84863662483
-
Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT
-
Agren R, et al. (2012) Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT. PLOS Comput Biol 8(5):e1002518.
-
(2012)
PLOS Comput Biol
, vol.8
, Issue.5
, pp. e1002518
-
-
Agren, R.1
-
33
-
-
84867554554
-
Predicting drug targets and biomarkers of cancer via genomescale metabolic modeling
-
Jerby L, Ruppin E (2012) Predicting drug targets and biomarkers of cancer via genomescale metabolic modeling. Clin Cancer Res 18(20):5572-5584.
-
(2012)
Clin Cancer Res
, vol.18
, Issue.20
, pp. 5572-5584
-
-
Jerby, L.1
Ruppin, E.2
-
34
-
-
84895833353
-
Chromosome 3p loss of heterozygosity is associated with a unique metabolic network in clear cell renal carcinoma
-
Gatto F, Nookaew I, Nielsen J (2014) Chromosome 3p loss of heterozygosity is associated with a unique metabolic network in clear cell renal carcinoma. Proc Natl Acad Sci USA 111(9):E866-E875.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, Issue.9
, pp. E866-E875
-
-
Gatto, F.1
Nookaew, I.2
Nielsen, J.3
-
35
-
-
0028146781
-
Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110
-
Varma A, Palsson BO (1994) Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. Appl Environ Microbiol 60(10):3724-3731.
-
(1994)
Appl Environ Microbiol
, vol.60
, Issue.10
, pp. 3724-3731
-
-
Varma, A.1
Palsson, B.O.2
-
36
-
-
84870507227
-
Glucose utilization via glycogen phosphorylase sustains proliferation and prevents premature senescence in cancer cells
-
Favaro E, et al. (2012) Glucose utilization via glycogen phosphorylase sustains proliferation and prevents premature senescence in cancer cells. Cell Metab 16(6): 751-764.
-
(2012)
Cell Metab
, vol.16
, Issue.6
, pp. 751-764
-
-
Favaro, E.1
-
37
-
-
84865202966
-
Essential gene profiles in breast, pancreatic, and ovarian cancer cells
-
Marcotte R, et al. (2012) Essential gene profiles in breast, pancreatic, and ovarian cancer cells. Cancer Discov 2(2):172-189.
-
(2012)
Cancer Discov
, vol.2
, Issue.2
, pp. 172-189
-
-
Marcotte, R.1
-
38
-
-
84859169877
-
The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
-
Barretina J, et al. (2012) The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity. Nature 483(7391):603-607.
-
(2012)
Nature
, vol.483
, Issue.7391
, pp. 603-607
-
-
Barretina, J.1
-
39
-
-
79952610870
-
Making sense of cancer genomic data
-
Chin L, Hahn WC, Getz G, Meyerson M (2011) Making sense of cancer genomic data. Genes Dev 25(6):534-555.
-
(2011)
Genes Dev
, vol.25
, Issue.6
, pp. 534-555
-
-
Chin, L.1
Hahn, W.C.2
Getz, G.3
Meyerson, M.4
-
40
-
-
84928678841
-
Predicting human genetic interactions from cancer genome evolution
-
Lu X, Megchelenbrink W, Notebaart RA, Huynen MA (2015) Predicting human genetic interactions from cancer genome evolution. PLoS One 10(5):e0125795.
-
(2015)
PLoS One
, vol.10
, Issue.5
, pp. e0125795
-
-
Lu, X.1
Megchelenbrink, W.2
Notebaart, R.A.3
Huynen, M.A.4
-
41
-
-
84861527388
-
The genomic and transcriptomic architecture of 2, 000 breast tumours reveals novel subgroups
-
METABRIC Group
-
Curtis C, et al.; METABRIC Group (2012) The genomic and transcriptomic architecture of 2, 000 breast tumours reveals novel subgroups. Nature 486(7403):346-352, 10.1038/nature10983.
-
(2012)
Nature
, vol.486
, Issue.7403
, pp. 346-352
-
-
Curtis, C.1
-
42
-
-
84860903681
-
Implementing an online tool for genome-wide validation of survival-associated biomarkers in ovarian-cancer using microarray data from 1287 patients
-
Gyorffy B, Lánczky A, Szállási Z (2012) Implementing an online tool for genome-wide validation of survival-associated biomarkers in ovarian-cancer using microarray data from 1287 patients. Endocr Relat Cancer 19(2):197-208.
-
(2012)
Endocr Relat Cancer
, vol.19
, Issue.2
, pp. 197-208
-
-
Gyorffy, B.1
Lánczky, A.2
Szállási, Z.3
-
43
-
-
2342659010
-
The logrank test
-
Bland JM, Altman DG (2004) The logrank test. BMJ 328(7447):1073.
-
(2004)
BMJ
, vol.328
, Issue.7447
, pp. 1073
-
-
Bland, J.M.1
Altman, D.G.2
-
44
-
-
84901624185
-
Metabolic shifts toward glutamine regulate tumor growth, invasion and bioenergetics in ovarian cancer
-
Yang L, et al. (2014) Metabolic shifts toward glutamine regulate tumor growth, invasion and bioenergetics in ovarian cancer. Mol Syst Biol 10(5):728, 10.1002/msb.20134892.
-
(2014)
Mol Syst Biol
, vol.10
, Issue.5
, pp. 728
-
-
Yang, L.1
-
45
-
-
33846910173
-
Global reconstruction of the human metabolic network based on genomic and bibliomic data
-
Duarte NC, et al. (2007) Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc Natl Acad Sci USA 104(6):1777-1782.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.6
, pp. 1777-1782
-
-
Duarte, N.C.1
|