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Volumn 216, Issue , 2016, Pages 69-78

Molecular identification and physiological characterization of yeasts, lactic acid bacteria and acetic acid bacteria isolated from heap and box cocoa bean fermentations in West Africa

Author keywords

Box fermentation; Cocoa beans; Heap fermentation; Microbial dynamics; Physiological characterization; Rep PCR

Indexed keywords

ACETIC ACID; ALCOHOL; BACTERIAL ENZYME; FUNGAL ENZYME; LACTIC ACID; RIBOSOME RNA; RNA 16S; RNA, RIBOSOMAL, 25S;

EID: 84942543671     PISSN: 01681605     EISSN: 18793460     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2015.09.004     Document Type: Article
Times cited : (81)

References (47)
  • 2
    • 0041369682 scopus 로고    scopus 로고
    • The microbial ecology of cocoa bean fermentations in Indonesia
    • Ardhana M., Fleet G.H. The microbial ecology of cocoa bean fermentations in Indonesia. Int. J. Food Microbiol. 2003, 86:87-99.
    • (2003) Int. J. Food Microbiol. , vol.86 , pp. 87-99
    • Ardhana, M.1    Fleet, G.H.2
  • 3
    • 39649106094 scopus 로고    scopus 로고
    • Impact of mixed Torulaspora delbrueckii-Saccharomyces cerevisiae culture on high-sugar fermentation
    • Bely M., Stoeckle P., Masneuf-Pomarède I., Dubourdieu D. Impact of mixed Torulaspora delbrueckii-Saccharomyces cerevisiae culture on high-sugar fermentation. Int. J. Food Microbiol. 2008, 122:312-320.
    • (2008) Int. J. Food Microbiol. , vol.122 , pp. 312-320
    • Bely, M.1    Stoeckle, P.2    Masneuf-Pomarède, I.3    Dubourdieu, D.4
  • 5
    • 33947371288 scopus 로고    scopus 로고
    • Dynamics and biodiversity of populations of lactic acid bacteria and acetic acid bacteria involved in spontaneous heap fermentation of cocoa beans in Ghana
    • Camu N., De Winter T., Verbrugghe K., Cleenwerck I., Vandamme P., Takrama J.S., Vancanneyt M., De Vuyst L. Dynamics and biodiversity of populations of lactic acid bacteria and acetic acid bacteria involved in spontaneous heap fermentation of cocoa beans in Ghana. Appl. Environ. Microbiol. 2007, 73:1809-1824.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 1809-1824
    • Camu, N.1    De Winter, T.2    Verbrugghe, K.3    Cleenwerck, I.4    Vandamme, P.5    Takrama, J.S.6    Vancanneyt, M.7    De Vuyst, L.8
  • 6
    • 37849035985 scopus 로고    scopus 로고
    • Influence of turning and environmental contamination on the dynamics of populations of lactic acid and acetic acid bacteria involved in spontaneous cocoa bean heap fermentation in Ghana
    • Camu N., González Á., De Winter T., Van Schoor A., De Bruyne K., Vandamme P., Takrama J.S., Addo S.K., De Vuyst L. Influence of turning and environmental contamination on the dynamics of populations of lactic acid and acetic acid bacteria involved in spontaneous cocoa bean heap fermentation in Ghana. Appl. Environ. Microbiol. 2008, 74:86-98.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 86-98
    • Camu, N.1    González, Á.2    De Winter, T.3    Van Schoor, A.4    De Bruyne, K.5    Vandamme, P.6    Takrama, J.S.7    Addo, S.K.8    De Vuyst, L.9
  • 7
    • 0031487747 scopus 로고    scopus 로고
    • Screening of non-Saccharomyces wine yeasts for the presence of extracellular hydrolytic enzymes
    • Charoenchai C., Fleet G.H., Henschke P.A., Todd B.E.N. Screening of non-Saccharomyces wine yeasts for the presence of extracellular hydrolytic enzymes. Aust. J. Grape Wine Res. 1997, 3:2-8.
    • (1997) Aust. J. Grape Wine Res. , vol.3 , pp. 2-8
    • Charoenchai, C.1    Fleet, G.H.2    Henschke, P.A.3    Todd, B.E.N.4
  • 8
    • 33645891635 scopus 로고    scopus 로고
    • Fermentation behaviour and metabolic interactions of multistarter wine yeast fermentations
    • Ciani M., Beco L., Comitini F. Fermentation behaviour and metabolic interactions of multistarter wine yeast fermentations. Int. J. Food Microbiol. 2006, 108:239-245.
    • (2006) Int. J. Food Microbiol. , vol.108 , pp. 239-245
    • Ciani, M.1    Beco, L.2    Comitini, F.3
  • 10
    • 0034256049 scopus 로고    scopus 로고
    • Direct profiling of the yeast dynamics in wine fermentations
    • Cocolin L., Bisson L.F., Mills D.A. Direct profiling of the yeast dynamics in wine fermentations. FEMS Microbiol. Lett. 2000, 189:81-87.
    • (2000) FEMS Microbiol. Lett. , vol.189 , pp. 81-87
    • Cocolin, L.1    Bisson, L.F.2    Mills, D.A.3
  • 11
    • 9744228256 scopus 로고    scopus 로고
    • Study of the ecology of fresh sausages and characterization of populations of lactic acid bacteria by molecular methods fermented sausage
    • Cocolin L., Rantsiou K., Iacumin L., Urso R., Cantoni C., Comi G. Study of the ecology of fresh sausages and characterization of populations of lactic acid bacteria by molecular methods fermented sausage. Appl. Environ. Microbiol. 2004, 70:1883-1894.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 1883-1894
    • Cocolin, L.1    Rantsiou, K.2    Iacumin, L.3    Urso, R.4    Cantoni, C.5    Comi, G.6
  • 12
    • 77956185773 scopus 로고    scopus 로고
    • Microbial ecology of artisanal products from North West of Italy and antimicrobial activity of the autochthonous populations
    • Dal Bello B., Rantsiou K., Bellio A., Zeppa G., Ambrosoli R., Civera T., Cocolin L. Microbial ecology of artisanal products from North West of Italy and antimicrobial activity of the autochthonous populations. LWT Food Sci. Technol. 2010, 43:1151-1159.
    • (2010) LWT Food Sci. Technol. , vol.43 , pp. 1151-1159
    • Dal Bello, B.1    Rantsiou, K.2    Bellio, A.3    Zeppa, G.4    Ambrosoli, R.5    Civera, T.6    Cocolin, L.7
  • 13
    • 80052217785 scopus 로고    scopus 로고
    • The fast milk acidifying phenotype of Streptococcus thermophilus can be acquired by natural transformation of the genomic island encoding the cell-envelope proteinase PrtS
    • Dandoy D., Fremaux C., Henry de Frahan M., Horvath P., Boyaval P., Hols P., Fontaine L. The fast milk acidifying phenotype of Streptococcus thermophilus can be acquired by natural transformation of the genomic island encoding the cell-envelope proteinase PrtS. Microb. Cell Factories 2011, 10(S21):1.
    • (2011) Microb. Cell Factories , vol.10 , Issue.S21 , pp. 1
    • Dandoy, D.1    Fremaux, C.2    Henry de Frahan, M.3    Horvath, P.4    Boyaval, P.5    Hols, P.6    Fontaine, L.7
  • 15
    • 84871773816 scopus 로고    scopus 로고
    • Spontaneous cocoa bean fermentation carried out in a novel-design stainless steel tank: influence on the dynamics of microbial populations and physical-chemical properties
    • De Melo Pereira G.V., Magalhães K.T., de Almeida E.G., da Silva Coelho I., Schwan R.F. Spontaneous cocoa bean fermentation carried out in a novel-design stainless steel tank: influence on the dynamics of microbial populations and physical-chemical properties. Int. J. Food Microbiol. 2013, 161:121-133.
    • (2013) Int. J. Food Microbiol. , vol.161 , pp. 121-133
    • De Melo Pereira, G.V.1    Magalhães, K.T.2    de Almeida, E.G.3    da Silva Coelho, I.4    Schwan, R.F.5
  • 16
    • 84921517116 scopus 로고    scopus 로고
    • Exploitation of the non-Saccharomyces yeast Starmerella bacillaris (synonym Candida zemplinina) in wine fermentation: physiological and molecular characterizations
    • Englezos V., Rantsiou K., Torchio F., Rolle L., Gerbi V., Cocolin L. Exploitation of the non-Saccharomyces yeast Starmerella bacillaris (synonym Candida zemplinina) in wine fermentation: physiological and molecular characterizations. Int. J. Food Microbiol. 2015, 199:33-40.
    • (2015) Int. J. Food Microbiol. , vol.199 , pp. 33-40
    • Englezos, V.1    Rantsiou, K.2    Torchio, F.3    Rolle, L.4    Gerbi, V.5    Cocolin, L.6
  • 17
    • 24044450541 scopus 로고    scopus 로고
    • Study of beta-glucosidase production by wine-related yeasts during alcoholic fermentation. A new rapid fluorimetric method to determine enzymatic activity
    • Fia G., Giovani G., Rosi I. Study of beta-glucosidase production by wine-related yeasts during alcoholic fermentation. A new rapid fluorimetric method to determine enzymatic activity. J. Appl. Microbiol. 2005, 99:509-517.
    • (2005) J. Appl. Microbiol. , vol.99 , pp. 509-517
    • Fia, G.1    Giovani, G.2    Rosi, I.3
  • 18
    • 0036367011 scopus 로고    scopus 로고
    • Physiological diversity and trehalose accumulation in Schizosaccharomyces pombe strains isolated from spontaneous fermentations during the production of the artisanal Brazilian cachaça
    • Gomes F.C.O., Pataro C., Guerra J.B., Neves M.J., Corrêa S.R., Moreira E.S.A., Rosa C.A. Physiological diversity and trehalose accumulation in Schizosaccharomyces pombe strains isolated from spontaneous fermentations during the production of the artisanal Brazilian cachaça. Can. J. Microbiol. 2002, 48:399-406.
    • (2002) Can. J. Microbiol. , vol.48 , pp. 399-406
    • Gomes, F.C.O.1    Pataro, C.2    Guerra, J.B.3    Neves, M.J.4    Corrêa, S.R.5    Moreira, E.S.A.6    Rosa, C.A.7
  • 19
    • 44749086438 scopus 로고    scopus 로고
    • Acetic acid bacteria in traditional balsamic vinegar: phenotypic traits relevant for starter cultures selection
    • Gullo M., Giudici P. Acetic acid bacteria in traditional balsamic vinegar: phenotypic traits relevant for starter cultures selection. Int. J. Food Microbiol. 2008, 125:46-53.
    • (2008) Int. J. Food Microbiol. , vol.125 , pp. 46-53
    • Gullo, M.1    Giudici, P.2
  • 20
    • 84908455103 scopus 로고    scopus 로고
    • Dynamics of microbial ecology during cocoa fermentation and drying: towards the identification of molecular markers
    • Hamdouche Y., Guehi T., Durand N., Kedjebo K.B.D., Montet D., Meile J.C. Dynamics of microbial ecology during cocoa fermentation and drying: towards the identification of molecular markers. Food Control 2015, 48:117-122.
    • (2015) Food Control , vol.48 , pp. 117-122
    • Hamdouche, Y.1    Guehi, T.2    Durand, N.3    Kedjebo, K.B.D.4    Montet, D.5    Meile, J.C.6
  • 22
    • 84892865799 scopus 로고    scopus 로고
    • Yeasts are essential for cocoa bean fermentation
    • Ho V.T.T., Zhao J., Fleet G. Yeasts are essential for cocoa bean fermentation. Int. J. Food Microbiol. 2014, 174:72-87.
    • (2014) Int. J. Food Microbiol. , vol.174 , pp. 72-87
    • Ho, V.T.T.1    Zhao, J.2    Fleet, G.3
  • 23
    • 0037375423 scopus 로고    scopus 로고
    • Occurrence and taxonomic characteristics of strains of Saccharomyces cerevisiae predominant in African indigenous fermented foods and beverages
    • Jespersen L. Occurrence and taxonomic characteristics of strains of Saccharomyces cerevisiae predominant in African indigenous fermented foods and beverages. FEMS Yeast Res. 2003, 3:191-200.
    • (2003) FEMS Yeast Res. , vol.3 , pp. 191-200
    • Jespersen, L.1
  • 24
    • 13244283286 scopus 로고    scopus 로고
    • Occurrence and diversity of yeasts involved in fermentation of West African cocoa beans
    • Jespersen L., Nielsen D.S., Hønholt S., Jakobsen M. Occurrence and diversity of yeasts involved in fermentation of West African cocoa beans. FEMS Yeast Res. 2005, 5:441-453.
    • (2005) FEMS Yeast Res. , vol.5 , pp. 441-453
    • Jespersen, L.1    Nielsen, D.S.2    Hønholt, S.3    Jakobsen, M.4
  • 25
    • 0025990859 scopus 로고
    • Identification of mesophilic lactic acid bacteria by using polymerase chain reaction-amplified variable regions of 16S rRNA and specific DNA probes
    • Klijn N., Weerkamp A.H., Vos W.M.D.E. Identification of mesophilic lactic acid bacteria by using polymerase chain reaction-amplified variable regions of 16S rRNA and specific DNA probes. Appl. Environ. Microbiol. 1991.
    • (1991) Appl. Environ. Microbiol.
    • Klijn, N.1    Weerkamp, A.H.2    Vos, W.M.D.E.3
  • 27
    • 0030907763 scopus 로고    scopus 로고
    • Identification of clinically important ascomycetous yeasts based on nucleotide divergence in the 5 J end of the large-subunit (26S) ribosomal DNA gene
    • Kurtzman C.P., Robnett C.J. Identification of clinically important ascomycetous yeasts based on nucleotide divergence in the 5 J end of the large-subunit (26S) ribosomal DNA gene. J. Clin. Microbiol. 1997, 35:1216-1223.
    • (1997) J. Clin. Microbiol. , vol.35 , pp. 1216-1223
    • Kurtzman, C.P.1    Robnett, C.J.2
  • 29
    • 79952003749 scopus 로고    scopus 로고
    • Dynamics and species diversity of communities of lactic acid bacteria and acetic acid bacteria during spontaneous cocoa bean fermentation in vessels
    • Lefeber T., Gobert W., Vrancken G., Camu N., De Vuyst L. Dynamics and species diversity of communities of lactic acid bacteria and acetic acid bacteria during spontaneous cocoa bean fermentation in vessels. Food Microbiol. 2011, 28:457-464.
    • (2011) Food Microbiol. , vol.28 , pp. 457-464
    • Lefeber, T.1    Gobert, W.2    Vrancken, G.3    Camu, N.4    De Vuyst, L.5
  • 30
    • 78650362870 scopus 로고    scopus 로고
    • Kinetic analysis of strains of lactic acid bacteria and acetic acid bacteria in cocoa pulp simulation media toward development of a starter culture for cocoa bean fermentation
    • Lefeber T., Janssens M., Camu N., De Vuyst L. Kinetic analysis of strains of lactic acid bacteria and acetic acid bacteria in cocoa pulp simulation media toward development of a starter culture for cocoa bean fermentation. Appl. Environ. Microbiol. 2010, 76:7708-7716.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 7708-7716
    • Lefeber, T.1    Janssens, M.2    Camu, N.3    De Vuyst, L.4
  • 31
    • 84857441039 scopus 로고    scopus 로고
    • On-farm implementation of a starter culture for improved cocoa bean fermentation and its influence on the flavour of chocolates produced thereof
    • Lefeber T., Papalexandratou Z., Gobert W., Camu N., De Vuyst L. On-farm implementation of a starter culture for improved cocoa bean fermentation and its influence on the flavour of chocolates produced thereof. Food Microbiol. 2012, 30:379-392.
    • (2012) Food Microbiol. , vol.30 , pp. 379-392
    • Lefeber, T.1    Papalexandratou, Z.2    Gobert, W.3    Camu, N.4    De Vuyst, L.5
  • 32
    • 80051612780 scopus 로고    scopus 로고
    • Theobroma cacao L., "the food of the gods": quality determinants of commercial cocoa beans, with particular reference to the impact of fermentation
    • Lima L.J.R., Almeida M.H., Nout M.J.R., Zwietering M.H. Theobroma cacao L., "the food of the gods": quality determinants of commercial cocoa beans, with particular reference to the impact of fermentation. Crit. Rev. Food Sci. Nutr. 2011, 51:731-761.
    • (2011) Crit. Rev. Food Sci. Nutr. , vol.51 , pp. 731-761
    • Lima, L.J.R.1    Almeida, M.H.2    Nout, M.J.R.3    Zwietering, M.H.4
  • 34
    • 17144368480 scopus 로고    scopus 로고
    • Yeast populations associated with Ghanaian cocoa fermentations analysed using denaturing gradient gel electrophoresis (DGGE)
    • Nielsen D.S., Hønholt S., Tano-Debrah K., Jespersen L. Yeast populations associated with Ghanaian cocoa fermentations analysed using denaturing gradient gel electrophoresis (DGGE). Yeast 2005, 22:271-284.
    • (2005) Yeast , vol.22 , pp. 271-284
    • Nielsen, D.S.1    Hønholt, S.2    Tano-Debrah, K.3    Jespersen, L.4
  • 35
  • 36
    • 79955871885 scopus 로고    scopus 로고
    • Comparison of the bacterial species diversity of spontaneous cocoa bean fermentations carried out at selected farms in Ivory Coast and Brazil
    • Papalexandratou Z., Camu N., Falony G., De Vuyst L. Comparison of the bacterial species diversity of spontaneous cocoa bean fermentations carried out at selected farms in Ivory Coast and Brazil. Food Microbiol. 2011, 28:964-973.
    • (2011) Food Microbiol. , vol.28 , pp. 964-973
    • Papalexandratou, Z.1    Camu, N.2    Falony, G.3    De Vuyst, L.4
  • 37
    • 83155185389 scopus 로고    scopus 로고
    • Species diversity, community dynamics, and metabolite kinetics of the microbiota associated with traditional ecuadorian spontaneous cocoa bean fermentations
    • Papalexandratou Z., Falony G., Romanens E., Jimenez J.C., Amores F., Daniel H.M., De Vuyst L. Species diversity, community dynamics, and metabolite kinetics of the microbiota associated with traditional ecuadorian spontaneous cocoa bean fermentations. Appl. Environ. Microbiol. 2011, 77:7698-7714.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 7698-7714
    • Papalexandratou, Z.1    Falony, G.2    Romanens, E.3    Jimenez, J.C.4    Amores, F.5    Daniel, H.M.6    De Vuyst, L.7
  • 38
    • 84876729048 scopus 로고    scopus 로고
    • Hanseniaspora opuntiae, Saccharomyces cerevisiae, Lactobacillus fermentum, and Acetobacter pasteurianus predominate during well-performed Malaysian cocoa bean box fermentations, underlining the importance of these microbial species for a successful cocoa
    • Papalexandratou Z., Lefeber T., Bahrim B., Lee O.S., Daniel H.M., De Vuyst L. Hanseniaspora opuntiae, Saccharomyces cerevisiae, Lactobacillus fermentum, and Acetobacter pasteurianus predominate during well-performed Malaysian cocoa bean box fermentations, underlining the importance of these microbial species for a successful cocoa. Food Microbiol. 2013, 35:73-85.
    • (2013) Food Microbiol. , vol.35 , pp. 73-85
    • Papalexandratou, Z.1    Lefeber, T.2    Bahrim, B.3    Lee, O.S.4    Daniel, H.M.5    De Vuyst, L.6
  • 39
    • 80051474525 scopus 로고    scopus 로고
    • Spontaneous organic cocoa bean box fermentations in Brazil are characterized by a restricted species diversity of lactic acid bacteria and acetic acid bacteria
    • Papalexandratou Z., Vrancken G., de Bruyne K., Vandamme P., de Vuyst L. Spontaneous organic cocoa bean box fermentations in Brazil are characterized by a restricted species diversity of lactic acid bacteria and acetic acid bacteria. Food Microbiol. 2011, 28:1326-1338.
    • (2011) Food Microbiol. , vol.28 , pp. 1326-1338
    • Papalexandratou, Z.1    Vrancken, G.2    de Bruyne, K.3    Vandamme, P.4    de Vuyst, L.5
  • 40
    • 84866165015 scopus 로고    scopus 로고
    • Microbiological and physicochemical characterization of small-scale cocoa fermentations and screening of yeast and bacterial strains to develop a defined starter culture
    • Pereira G.V.D.M., Miguel M.G.D.C.P., Ramos C.L., Schwan R.F. Microbiological and physicochemical characterization of small-scale cocoa fermentations and screening of yeast and bacterial strains to develop a defined starter culture. Appl. Environ. Microbiol. 2012, 78:5395-5405.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 5395-5405
    • Pereira, G.V.D.M.1    Miguel, M.G.D.C.P.2    Ramos, C.L.3    Schwan, R.F.4
  • 41
    • 84878954582 scopus 로고    scopus 로고
    • Strain-specific probiotics properties of Lactobacillus fermentum, Lactobacillus plantarum and Lactobacillus brevis isolates from Brazilian food products
    • Ramos C.L., Thorsen L., Schwan R.F., Jespersen L. Strain-specific probiotics properties of Lactobacillus fermentum, Lactobacillus plantarum and Lactobacillus brevis isolates from Brazilian food products. Food Microbiol. 2013, 36:22-29.
    • (2013) Food Microbiol. , vol.36 , pp. 22-29
    • Ramos, C.L.1    Thorsen, L.2    Schwan, R.F.3    Jespersen, L.4
  • 43
    • 4644271406 scopus 로고    scopus 로고
    • The microbiology of cocoa fermentation and its role in chocolate quality
    • Schwan R.F., Wheals A.E. The microbiology of cocoa fermentation and its role in chocolate quality. Crit. Rev. Food Sci. Nutr. 2004, 44:205-221.
    • (2004) Crit. Rev. Food Sci. Nutr. , vol.44 , pp. 205-221
    • Schwan, R.F.1    Wheals, A.E.2
  • 44
    • 0034930779 scopus 로고    scopus 로고
    • Screening for the production of extracellular hydrolytic enzymes by non-Saccharomyces wine yeasts
    • Strauss M.L.a., Jolly N.P., Lambrechts M.G., van Rensburg P. Screening for the production of extracellular hydrolytic enzymes by non-Saccharomyces wine yeasts. J. Appl. Microbiol. 2001, 91:182-190.
    • (2001) J. Appl. Microbiol. , vol.91 , pp. 182-190
    • Strauss, M.1    Jolly, N.P.2    Lambrechts, M.G.3    van Rensburg, P.4
  • 46
    • 0027992990 scopus 로고
    • Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction
    • Versalovic J., Schneider M., De Bruijn F., Lupski J. Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol. Cell. Biol. 1994, 5:25-40.
    • (1994) Methods Mol. Cell. Biol. , vol.5 , pp. 25-40
    • Versalovic, J.1    Schneider, M.2    De Bruijn, F.3    Lupski, J.4
  • 47
    • 84907961857 scopus 로고    scopus 로고
    • Identification and partial characterization of lactic acid bacteria isolated from traditional dairy products produced by herders in the western Tianshan Mountains of China
    • Zuo F.L., Feng X.J., Chen L.L., Chen S.W. Identification and partial characterization of lactic acid bacteria isolated from traditional dairy products produced by herders in the western Tianshan Mountains of China. Lett. Appl. Microbiol. 2014, 59:549-556.
    • (2014) Lett. Appl. Microbiol. , vol.59 , pp. 549-556
    • Zuo, F.L.1    Feng, X.J.2    Chen, L.L.3    Chen, S.W.4


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