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Volumn 22, Issue 4, 2005, Pages 271-284

Yeast populations associated with Ghanaian cocoa fermentations analysed using denaturing gradient gel electrophoresis (DGGE)

Author keywords

26S rRNA gene; Cluster analysis; Cocoa; DGGE; DNA extraction; Fermentation; Yeast

Indexed keywords

FUNGAL DNA; FUNGAL RNA;

EID: 17144368480     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/yea.1207     Document Type: Article
Times cited : (106)

References (47)
  • 2
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, Madden TL, Schäffer AA, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schäffer, A.A.3
  • 3
    • 0034666483 scopus 로고    scopus 로고
    • Cluster analysis, richness and biodeversity indexes derived from dentaturing gradient gel electrophoresis fingerprints of bacterial communities demonstrate that traditional maize fermentations are driven by the transformation process
    • Ampe F, Miambi E. 2000. Cluster analysis, richness and biodeversity indexes derived from dentaturing gradient gel electrophoresis fingerprints of bacterial communities demonstrate that traditional maize fermentations are driven by the transformation process. Int J Food Microbiol 60: 91-97.
    • (2000) Int. J. Food Microbiol. , vol.60 , pp. 91-97
    • Ampe, F.1    Miambi, E.2
  • 4
    • 17144362008 scopus 로고    scopus 로고
    • Anon. International Cocoa Organization; www.icco.org
    • Anon. 2004. Annual report for 2001/02. International Cocoa Organization; www.icco.org
    • (2004) Annual Report for 2001/02
  • 5
    • 0041369682 scopus 로고    scopus 로고
    • The microbial ecology of cocoa fermentations in Indonesia
    • Ardhana M, Fleet GH. 2003. The microbial ecology of cocoa fermentations in Indonesia. Int J Food Microbiol 86: 87-99.
    • (2003) Int. J. Food Microbiol. , vol.86 , pp. 87-99
    • Ardhana, M.1    Fleet, G.H.2
  • 6
    • 0028053821 scopus 로고
    • Survey of Ghanian cocoa farmer fermentation practices and their influence on cocoa flavour
    • Baker DM, Tomlins KI, Gay C. 1994. Survey of Ghanian cocoa farmer fermentation practices and their influence on cocoa flavour. Food Chem 51: 425-431.
    • (1994) Food Chem. , vol.51 , pp. 425-431
    • Baker, D.M.1    Tomlins, K.I.2    Gay, C.3
  • 9
    • 0036095105 scopus 로고    scopus 로고
    • An application of PCR-DGGE analysis to profile the yeast populations in raw milk
    • Cocolin L, Aggio D, Manzano M, Cantoni C, Comi G. 2002a. An application of PCR-DGGE analysis to profile the yeast populations in raw milk. Int Dairy J 12: 407-411.
    • (2002) Int. Dairy J. , vol.12 , pp. 407-411
    • Cocolin, L.1    Aggio, D.2    Manzano, M.3    Cantoni, C.4    Comi, G.5
  • 10
    • 0034256049 scopus 로고    scopus 로고
    • Direct profiling of the yeast dynamics in wine fermentations
    • Cocolin L, Bisson LF, Mills DA. 2000. Direct profiling of the yeast dynamics in wine fermentations. FEMS Microbiol Lett 189 81-87.
    • (2000) FEMS Microbiol. Lett. , vol.189 , pp. 81-87
    • Cocolin, L.1    Bisson, L.F.2    Mills, D.A.3
  • 11
    • 0034922099 scopus 로고    scopus 로고
    • Direct identification of the indigenous yeasts in commercial wine fermentations
    • Cocolin L, Heisey A, Mills DA. 2001. Direct identification of the indigenous yeasts in commercial wine fermentations. Am J Enol Viticult 52: 49-53.
    • (2001) Am. J. Enol. Viticult , vol.52 , pp. 49-53
    • Cocolin, L.1    Heisey, A.2    Mills, D.A.3
  • 12
    • 0036109747 scopus 로고    scopus 로고
    • Monitoring of yeast population changes during a continous wine fermentation by molecular methods
    • Cocolin L, Manzano M, Rebecca S, Comi G. 2002b. Monitoring of yeast population changes during a continous wine fermentation by molecular methods. Am J Enol Viticult 53: 24-27.
    • (2002) Am. J. Enol. Viticult , vol.53 , pp. 24-27
    • Cocolin, L.1    Manzano, M.2    Rebecca, S.3    Comi, G.4
  • 13
    • 0038044721 scopus 로고    scopus 로고
    • Wine yeast inhibition by sulfur dioxide: A comparison of culture-dependent and culture-independent methods
    • Cocolin L, Mills DA. 2003. Wine yeast inhibition by sulfur dioxide: a comparison of culture-dependent and culture-independent methods. Am J Enol Viticult 54: 125-130.
    • (2003) Am. J. Enol. Viticult , vol.54 , pp. 125-130
    • Cocolin, L.1    Mills, D.A.2
  • 14
    • 0032938864 scopus 로고    scopus 로고
    • Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community
    • Eichner CA, Erb RW, Timmis KN, Wagner-Döbler I. 1999. Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community. Appl Environ Microbiol 65: 102-109.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 102-109
    • Eichner, C.A.1    Erb, R.W.2    Timmis, K.N.3    Wagner-Döbler, I.4
  • 15
    • 0013649913 scopus 로고
    • Growth factor requirements of six fungi associated with fruit decay
    • Esposito RG, Greenwood H, Fletcher M. 1962. Growth factor requirements of six fungi associated with fruit decay. J Bacteriol 83: 250-255.
    • (1962) J. Bacteriol. , vol.83 , pp. 250-255
    • Esposito, R.G.1    Greenwood, H.2    Fletcher, M.3
  • 16
    • 1842855208 scopus 로고    scopus 로고
    • Microbial population changes during sourdough fermentation monitored by DGGE analysis of 16S and 26S rRNA gene fragments
    • Gatto V, Torriani S. 2004. Microbial population changes during sourdough fermentation monitored by DGGE analysis of 16S and 26S rRNA gene fragments. Ann Microbiol 54: 31-42.
    • (2004) Ann. Microbiol. , vol.54 , pp. 31-42
    • Gatto, V.1    Torriani, S.2
  • 17
    • 0035919814 scopus 로고    scopus 로고
    • DNA-based, culture-independent strategies for evaluating microbial communities in food-associated ecosystems
    • Giraffa G, Neviani E. 2001. DNA-based, culture-independent strategies for evaluating microbial communities in food-associated ecosystems. Int J Food Microbiol 67: 19-34.
    • (2001) Int. J. Food Microbiol. , vol.67 , pp. 19-34
    • Giraffa, G.1    Neviani, E.2
  • 18
    • 0034559943 scopus 로고    scopus 로고
    • Characterization of wine yeasts by temperature gradient gel electrophoresis
    • Hernán-Gómez S, Espinosa JC, Ubeda IF. 2000. Characterization of wine yeasts by temperature gradient gel electrophoresis. FEMS Microbiol Lett 193: 45-50.
    • (2000) FEMS Microbiol. Lett. , vol.193 , pp. 45-50
    • Hernán-Gómez, S.1    Espinosa, J.C.2    Ubeda, I.F.3
  • 19
    • 0026733568 scopus 로고
    • DNA fingerprinting of freeze-dried tissues
    • Huckenbeck W, Bonte W. 1992. DNA fingerprinting of freeze-dried tissues. Int J Legal Med 105: 39-41.
    • (1992) Int. J. Legal Med. , vol.105 , pp. 39-41
    • Huckenbeck, W.1    Bonte, W.2
  • 20
    • 13244283286 scopus 로고    scopus 로고
    • Occurence and diversity of yeasts involved in fermentation of West African cocoa beans
    • (in press)
    • Jespersen L, Nielsen DS, Hønholt S, Jakobsen M. 2004. Occurence and diversity of yeasts involved in fermentation of West African cocoa beans. FEMS Yeast Res (in press).
    • (2004) FEMS Yeast Res.
    • Jespersen, L.1    Nielsen, D.S.2    Hønholt, S.3    Jakobsen, M.4
  • 21
    • 0344629203 scopus 로고    scopus 로고
    • Bias and artifacts in multitemplate polymerase chain reactions (PCR)
    • Kanagawa T. 2003. Bias and artifacts in multitemplate polymerase chain reactions (PCR). J Biosci Bioeng 96: 317-323.
    • (2003) J. Biosci. Bioeng. , vol.96 , pp. 317-323
    • Kanagawa, T.1
  • 22
    • 0031792246 scopus 로고    scopus 로고
    • Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences
    • Kurtzmann CP, Robnett CJ. 1998. Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie van Leeuwenhoek 73: 331-371.
    • (1998) Antonie Van Leeuwenhoek , vol.73 , pp. 331-371
    • Kurtzmann, C.P.1    Robnett, C.J.2
  • 23
    • 84887319540 scopus 로고
    • Cocoa fermentation
    • 2nd edn, Reed G, Nagodawithana TW (eds). VCH: Weinheim
    • Lopez AS, Dimick PS. 1995. Cocoa fermentation. In Enzymes, Biomass, Food and Feed, 2nd edn, Reed G, Nagodawithana TW (eds). VCH: Weinheim; 561-577.
    • (1995) Enzymes, Biomass, Food and Feed , pp. 561-577
    • Lopez, A.S.1    Dimick, P.S.2
  • 24
    • 2542516938 scopus 로고    scopus 로고
    • Yeast involved in the fermentation of Coffea arabica in East Africa determined by genotyping and by direct denaturing gradient gel electrophoresis
    • Masoud W, Cesar LB, Jespersen L, Jakobsen M. 2004. Yeast involved in the fermentation of Coffea arabica in East Africa determined by genotyping and by direct denaturing gradient gel electrophoresis. Yeast 21: 549-556.
    • (2004) Yeast , vol.21 , pp. 549-556
    • Masoud, W.1    Cesar, L.B.2    Jespersen, L.3    Jakobsen, M.4
  • 25
    • 2142746406 scopus 로고    scopus 로고
    • Identification and population dynamics of yeasts in sourdough fermentation processes by PCR-denaturing gradient gel electrophoresis
    • Meroth CB, Hammes WP, Hertel C. 2003. Identification and population dynamics of yeasts in sourdough fermentation processes by PCR-denaturing gradient gel electrophoresis. Appl Environ Microbiol 69: 7453-7461.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 7453-7461
    • Meroth, C.B.1    Hammes, W.P.2    Hertel, C.3
  • 26
    • 0036795785 scopus 로고    scopus 로고
    • Yeast diversity and persistence in botrytis-affected wine fermentations
    • Mills DA, Johannsen EA, Cocolin L. 2002. Yeast diversity and persistence in botrytis-affected wine fermentations. Appl Environ Microbiol 68: 4884-4983.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 4884-4983
    • Mills, D.A.1    Johannsen, E.A.2    Cocolin, L.3
  • 27
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, de Waal EC, Uitterlinden AG. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 28
    • 0031959006 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    • Muyzer G, Smalla K. 1998. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek 73: 127-141.
    • (1998) Antonie Van Leeuwenhoek , vol.73 , pp. 127-141
    • Muyzer, G.1    Smalla, K.2
  • 29
    • 2142804688 scopus 로고    scopus 로고
    • Case study on the distribution of mucosa-associated Bifidobacterium species, Lactobacillus species and other lactic acid bacteria in the human colon
    • Nielsen DS, Møller PL, Rosenfeldt V, et al. 2003. Case study on the distribution of mucosa-associated Bifidobacterium species, Lactobacillus species and other lactic acid bacteria in the human colon. Appl Environ Microbiol 69: 7545-7548.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 7545-7548
    • Nielsen, D.S.1    Møller, P.L.2    Rosenfeldt, V.3
  • 30
    • 84985337976 scopus 로고
    • Analysis of cocoa pulp and the formulation of a standardised artificial cocoa pulp medium
    • Pettipher GL. 1986. Analysis of cocoa pulp and the formulation of a standardised artificial cocoa pulp medium. J Sci Food Agric 37: 297-309.
    • (1986) J. Sci. Food Agric. , vol.37 , pp. 297-309
    • Pettipher, G.L.1
  • 31
    • 4344691709 scopus 로고    scopus 로고
    • Application and evaluation of denaturing gradient gel electrophoresis to analyse the yeast ecology of wine grapes
    • Prakitchaiwattana CJ, Fleet GH, Heard GM. 2004. Application and evaluation of denaturing gradient gel electrophoresis to analyse the yeast ecology of wine grapes. FEMS Yeast Res 4: 865-877.
    • (2004) FEMS Yeast Res. , vol.4 , pp. 865-877
    • Prakitchaiwattana, C.J.1    Fleet, G.H.2    Heard, G.M.3
  • 32
    • 17144396918 scopus 로고
    • Über Kakaofermentation
    • [in German]
    • Preyer-Buitenzorg A. 1901. Über Kakaofermentation [in German]. Tropenpflanzer 5: 157-173.
    • (1901) Tropenpflanzer , vol.5 , pp. 157-173
    • Preyer-Buitenzorg, A.1
  • 33
    • 0001095326 scopus 로고
    • Fermentation, drying, and storage of cacao beans
    • Roelofsen PA. 1958. Fermentation, drying, and storage of cacao beans. Adv Food Res 8: 225-296.
    • (1958) Adv. Food Res. , vol.8 , pp. 225-296
    • Roelofsen, P.A.1
  • 35
    • 17144390940 scopus 로고
    • A critical review of the yeast species previously described from cacao
    • Rombouts JE. 1953. A critical review of the yeast species previously described from cacao. Trop Agric 30: 34-41.
    • (1953) Trop. Agric. , vol.30 , pp. 34-41
    • Rombouts, J.E.1
  • 36
    • 0026678203 scopus 로고
    • Inhibition of PCR by components of food samples, microbial diagnostic assays and DNA-extraction solutions
    • Rossen L, Nørskov P, Holmstrøm K, Rasmussen OF. 1992. Inhibition of PCR by components of food samples, microbial diagnostic assays and DNA-extraction solutions. Int J Food Microbiol 17: 37-45.
    • (1992) Int. J. Food Microbiol. , vol.17 , pp. 37-45
    • Rossen, L.1    Nørskov, P.2    Holmstrøm, K.3    Rasmussen, O.F.4
  • 38
    • 0035160065 scopus 로고    scopus 로고
    • Analysis of fungal communities on historical church window glass by denaturing gradient gel electrophoresis and phylogenetic 18S rDNA sequence analysis
    • Schabereiter-Gurtner C, Piñar G, Lubitz W, Rölleke S. 2001. Analysis of fungal communities on historical church window glass by denaturing gradient gel electrophoresis and phylogenetic 18S rDNA sequence analysis. J Microbiol Methods 47: 345-354.
    • (2001) J. Microbiol. Methods , vol.47 , pp. 345-354
    • Schabereiter-Gurtner, C.1    Piñar, G.2    Lubitz, W.3    Rölleke, S.4
  • 39
    • 0031968508 scopus 로고    scopus 로고
    • Cocoa fermentations conducted with a defined microbial cocktail inoculum
    • Schwan RF. 1998. Cocoa fermentations conducted with a defined microbial cocktail inoculum. Appl Environ Microbiol 64: 1477-1483.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 1477-1483
    • Schwan, R.F.1
  • 40
    • 0029128254 scopus 로고
    • Microbial fermentation of cocoa beans, with emphasis on enzymatic degradation of the pulp
    • Schwan RF, Rose AH, Board RG. 1995. Microbial fermentation of cocoa beans, with emphasis on enzymatic degradation of the pulp. J Appl Bacteriol 79: (suppl): 96S-107S.
    • (1995) J. Appl. Bacteriol. , vol.79 , Issue.SUPPL.
    • Schwan, R.F.1    Rose, A.H.2    Board, R.G.3
  • 41
    • 4644271406 scopus 로고    scopus 로고
    • The microbiology of cocoa fermentation and its role in chocolate quality
    • Schwan RF, Wheals AE. 2004. The microbiology of cocoa fermentation and its role in chocolate quality. Crit Rev Food Sci Nutrit 44: 205-222.
    • (2004) Crit. Rev. Food Sci. Nutrit. , vol.44 , pp. 205-222
    • Schwan, R.F.1    Wheals, A.E.2
  • 42
    • 0344896849 scopus 로고    scopus 로고
    • Candida zemplina sp. nov., an osmotolerant and psychrotolerant yeast that ferments sweet botrytized wines
    • Sipiczki M. 2003. Candida zemplina sp. nov., an osmotolerant and psychrotolerant yeast that ferments sweet botrytized wines. Int J Syst Evol Microbiol 53: 2079-2083.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 2079-2083
    • Sipiczki, M.1
  • 43
    • 0032848195 scopus 로고    scopus 로고
    • Analysis of the intestinal microflora: A renaissance
    • Tannock GW. 1999. Analysis of the intestinal microflora: a renaissance. Antonie van Leeuwenhoek 76: 265-278.
    • (1999) Antonie Van Leeuwenhoek , vol.76 , pp. 265-278
    • Tannock, G.W.1
  • 45
    • 0038168331 scopus 로고    scopus 로고
    • Reliability of nucleic acid amplification methods for detection of Chlamydia trachomatis in urine: Results of the first international collaborative quality control study among 96 laboratories
    • Verkooyen RP, Noordhoek GT, Klapper PE, et al. 2003. Reliability of nucleic acid amplification methods for detection of Chlamydia trachomatis in urine: results of the first international collaborative quality control study among 96 laboratories. J Clin Microbiol 41: 3013-3016.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 3013-3016
    • Verkooyen, R.P.1    Noordhoek, G.T.2    Klapper, P.E.3
  • 46
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • Wilson IG. 1997. Inhibition and facilitation of nucleic acid amplification. Appl Environ Microbiol 63: 3741-3751.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3741-3751
    • Wilson, I.G.1


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