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Volumn 30, Issue 5, 2013, Pages 1224-1228

Hierarchical and spatially explicit clustering of DNA sequences with BAPS software

Author keywords

Bayesian inference; evolutionary epidemiology; genetic population structure; phylogeographics

Indexed keywords

BACTERIAL DNA;

EID: 84876526192     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mst028     Document Type: Article
Times cited : (450)

References (20)
  • 1
    • 74549201612 scopus 로고    scopus 로고
    • In defence of model-based inference in phylogeography
    • (22 co-authors)
    • Beaumont MA, Nielsen R, Robert C, et al. (22 co-authors). 2010. In defence of model-based inference in phylogeography. Mol Ecol. 19: 436-446.
    • (2010) Mol Ecol , vol.19 , pp. 436-446
    • Beaumont, M.A.1    Nielsen, R.2    Robert, C.3
  • 4
    • 34547883224 scopus 로고    scopus 로고
    • Bayesian clustering algorithms ascertaining spatial population structure: A new computer program and a comparison study
    • DOI 10.1111/j.1471-8286.2007.01769.x
    • Chen C, Durand E, Forbes F, Francois O. 2007. Bayesian clustering algorithms ascertaining spatial population structure: a new computer program and a comparison study. Mol Ecol Notes. 7: 747-756. (Pubitemid 47329398)
    • (2007) Molecular Ecology Notes , vol.7 , Issue.5 , pp. 747-756
    • Chen, C.1    Durand, E.2    Forbes, F.3    Francois, O.4
  • 6
    • 84870356234 scopus 로고    scopus 로고
    • Population subdivision and the detection of recombination in non-typable Haemophilus influenzae
    • Connor TR, Corander J, Hanage WP. 2012. Population subdivision and the detection of recombination in non-typable Haemophilus influenzae. Microbiology 158: 2958-2964.
    • (2012) Microbiology , vol.158 , pp. 2958-2964
    • Connor, T.R.1    Corander, J.2    Hanage, W.P.3
  • 7
    • 84863596741 scopus 로고    scopus 로고
    • Population structure in the Neisseria, and the biological significance of fuzzy species
    • Corander J, Connor TR, O'Dwyer CA, Kroll JS, Hanage WP. 2012. Population structure in the Neisseria, and the biological significance of fuzzy species. J R Soc Interface. 9: 1208-1215.
    • (2012) J R Soc Interface , vol.9 , pp. 1208-1215
    • Corander, J.1    Connor, T.R.2    O'Dwyer, C.A.3    Kroll, J.S.4    Hanage, W.P.5
  • 8
    • 33747078134 scopus 로고    scopus 로고
    • Bayesian identification of admixture events using multilocus molecular markers
    • DOI 10.1111/j.1365-294X.2006.02994.x
    • Corander J, Marttinen P. 2006. Bayesian identification of admixture events using multi-locus molecular markers. Mol Ecol. 15: 2833-2843. (Pubitemid 44215457)
    • (2006) Molecular Ecology , vol.15 , Issue.10 , pp. 2833-2843
    • Corander, J.1    Marttinen, P.2
  • 9
    • 62349132559 scopus 로고    scopus 로고
    • Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations
    • Corander J, Marttinen P, Sirén J, Tang J. 2008a. Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics 9: 539.
    • (2008) BMC Bioinformatics , vol.9 , pp. 539
    • Corander, J.1    Marttinen, P.2    Sirén, J.3    Tang, J.4
  • 10
    • 38149124743 scopus 로고    scopus 로고
    • Bayesian spatial modelling of genetic population structure
    • Corander J, Sirén J, Arjas E. 2008b. Bayesian spatial modelling of genetic population structure. Comp Stat. 23: 111-129.
    • (2008) Comp Stat , vol.23 , pp. 111-129
    • Corander, J.1    Sirén, J.2    Arjas, E.3
  • 11
    • 33845227584 scopus 로고    scopus 로고
    • Bayesian analysis of population structure based on linked molecular information
    • DOI 10.1016/j.mbs.2006.09.015, PII S0025556406001830
    • Corander J, Tang J. 2007. Bayesian analysis of population structure based on linked molecular information. Math Biosci. 205: 19-31. (Pubitemid 44854002)
    • (2007) Mathematical Biosciences , vol.205 , Issue.1 , pp. 19-31
    • Corander, J.1    Tang, J.2
  • 12
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol. 7: 214.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 13
    • 33750472670 scopus 로고    scopus 로고
    • Bayesian clustering using hidden Markov random fields in spatial population genetics
    • DOI 10.1534/genetics.106.059923
    • Francois O, Ancelet S, Guillot G. 2006. Bayesian clustering using hidden Markov random fields in spatial population genetics. Genetics 174: 805-816. (Pubitemid 44656469)
    • (2006) Genetics , vol.174 , Issue.2 , pp. 805-816
    • Francois, O.1    Ancelet, S.2    Guillot, G.3
  • 14
    • 23344443817 scopus 로고    scopus 로고
    • A spatial statistical model for landscape genetics
    • DOI 10.1534/genetics.104.033803
    • Guillot G, Estoup A, Mortier F, Cosson JF. 2005. A spatial statistical model for landscape genetics. Genetics 170: 1261-1280. (Pubitemid 41105481)
    • (2005) Genetics , vol.170 , Issue.3 , pp. 1261-1280
    • Guillot, G.1    Estoup, A.2    Mortier, F.3    Cosson, J.F.4
  • 15
    • 67149119196 scopus 로고    scopus 로고
    • Hyperrecombination, diversity and antibiotic resistance in the pneumococcus
    • Hanage WP, Fraser C, Tang J, Connor T, Corander J. 2009. Hyperrecombination, diversity and antibiotic resistance in the pneumococcus. Science 324: 1454-1457.
    • (2009) Science , vol.324 , pp. 1454-1457
    • Hanage, W.P.1    Fraser, C.2    Tang, J.3    Connor, T.4    Corander, J.5
  • 17
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol. 24: 1596-1599. (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 18
    • 70049114381 scopus 로고    scopus 로고
    • Identifying currents in the gene pool for bacterial populations using an integrative approach
    • Tang J, Hanage WP, Fraser C, Corander J. 2009. Identifying currents in the gene pool for bacterial populations using an integrative approach. PLoS Comput Biol. 5(8): e1000455.
    • (2009) PLoS Comput Biol , vol.5 , Issue.8
    • Tang, J.1    Hanage, W.P.2    Fraser, C.3    Corander, J.4


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